RchiOBHm_Chr7g0241581

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
67664208 .. 67666583
2376 bp
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UTR
Exon/CDS
Intron
PRQ21648

Sequence Viewer

Length: 351 bp
ATGATATATTTTGAATATGTGAAGGTGTTAGTGAAATTGATCAAATATCTATCCATGATATATTTTGAATATGTGAAGGTGTTGGTAAAAAGAAAATCAAGCATGCATTGCTTTAATGTTATTTCACATATTAATGTTGCAATATTTGTTGGTTGTGATCAAGCATGTGTTGCTCAAATGTTATTTCACATATTAATGCTGCAATATTTGTTGATTGTTTACTTGAGTTATAAAAATTGTAATTTAATCAATCAACAGTTCTTTCTTGTTTACTCACGAGCTTTGCAAAAAGCTTACCGGGTTTTGTGTTGTTGCAATCCCGGTACACTATTCAAATTGTGTAGCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.62

Weight (kDa)

9.25

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AciI CCGC 1 cut(s) 345
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 3 cut(s) 14, 68, 334
AluBI AGCT 2 cut(s) 281, 293
AluI AGCT 2 cut(s) 281, 293
ApeKI GCWGC 1 cut(s) 199
AseI ATTAAT 2 cut(s) 132, 194
AsuC2I CCSGG 2 cut(s) 299, 321
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 1 cut(s) 186
BclI TGATCA 2 cut(s) 39, 157
BcnI CCSGG 2 cut(s) 299, 321
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 299, 321
BmrFI CCNGG 2 cut(s) 299, 321
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 299, 321
Bse3DI GCAATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 298, 321
Bsp143I GATC 2 cut(s) 39, 157
BspACI CCGC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 106
BssMI GATC 2 cut(s) 39, 157
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 258
BstAPI GCANNNNNTGC 2 cut(s) 108, 170
BstC8I GCNNGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 42, 160
BstMBI GATC 2 cut(s) 39, 157
BstMWI GCNNNNNNNGC 2 cut(s) 108, 170
BstNSI RCATGY 2 cut(s) 106, 168
BstSCI CCNGG 2 cut(s) 297, 319
BstV1I GCAGC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 324
CviAII CATG 3 cut(s) 55, 103, 165
CviJI RGCY 2 cut(s) 281, 293
CviKI_1 RGCY 2 cut(s) 281, 293
CviQI GTAC 1 cut(s) 324
DpnI GATC 2 cut(s) 41, 159
DpnII GATC 2 cut(s) 39, 157
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 3 cut(s) 58, 106, 168
FatI CATG 3 cut(s) 54, 102, 164
FauI CCCGC 1 cut(s) 338
FbaI TGATCA 2 cut(s) 39, 157
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HapII CCGG 2 cut(s) 298, 321
Hin1II CATG 3 cut(s) 58, 106, 168
HindIII AAGCTT 1 cut(s) 291
HpaII CCGG 2 cut(s) 298, 321
Hpy166II GTNNAC 3 cut(s) 220, 271, 326
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 3 cut(s) 220, 271, 326
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 5 cut(s) 106, 140, 202, 286, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 170
Hsp92II CATG 3 cut(s) 58, 106, 168
Ksp22I TGATCA 2 cut(s) 39, 157
Kzo9I GATC 2 cut(s) 39, 157
LpnPI CCDG 2 cut(s) 311, 334
Lsp1109I GCAGC 1 cut(s) 186
MalI GATC 2 cut(s) 41, 159
MboI GATC 2 cut(s) 39, 157
MluCI AATT 4 cut(s) 35, 235, 241, 335
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 4 cut(s) 114, 132, 194, 245
MslI CAYNNNNRTG 2 cut(s) 132, 194
MspI CCGG 2 cut(s) 298, 321
MspR9I CCNGG 2 cut(s) 299, 321
MwoI GCNNNNNNNGC 2 cut(s) 108, 170
NciI CCSGG 2 cut(s) 299, 321
NdeII GATC 2 cut(s) 39, 157
NlaIII CATG 3 cut(s) 58, 106, 168
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 2 cut(s) 106, 168
PaeI GCATGC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 132, 194
PsiI TTATAA 1 cut(s) 231
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 2 cut(s) 132, 194
SaqAI TTAA 4 cut(s) 114, 132, 194, 245
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 39, 157
ScrFI CCNGG 2 cut(s) 299, 321
SetI ASST 4 cut(s) 27, 81, 283, 295
SmiMI CAYNNNNRTG 2 cut(s) 132, 194
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SphI GCATGC 1 cut(s) 106
Sse9I AATT 4 cut(s) 35, 235, 241, 335
SsiI CCGC 1 cut(s) 345
SspI AATATT 2 cut(s) 144, 206
StyD4I CCNGG 2 cut(s) 297, 319
TaaI ACNGT 1 cut(s) 258
TasI AATT 4 cut(s) 35, 235, 241, 335
Tru1I TTAA 4 cut(s) 114, 132, 194, 245
Tru9I TTAA 4 cut(s) 114, 132, 194, 245
TseI GCWGC 1 cut(s) 199
VspI ATTAAT 2 cut(s) 132, 194
XceI RCATGY 2 cut(s) 106, 168
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.