Rh4AG016700

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006422
Physical Location & Seq
Reverse (-)
3364552 .. 3379720
15169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG016700.1

Sequence Viewer

Length: 849 bp
ATGGCTTCCACGATTGTCTCTCCAAGCAGTTCGTCCTCGTCGAGGCCGCCATCGTCATCGTCACCAGTGGATGCTGCTATTGGCGGCATCATGGATGATTCCACTGCTGAGATAGAAACTTCCAGGGATCTATCTTACAACAAGGGCCTGACAGGACCACTCCCAGCAGAAATTGGGAGTTTAAAGAAGCTATCTAACATAATTCTGGTTGGTTGCAGCTTCTCTGGTCTCATCCCTCCTACTGTAGGGTCCCTACAGGAGCTAGTATATATGTCTCTGAACTCTGGGAGGATACCATCTTCTATTGGTAGTCTGTCTAGACTATATTGGCTGGATCTAGCTGACAACCTTGAAGGACCCATCTCAGTCTCTGATAGTGGTGAACCTGGTCTTGACATTCTCAGTCATTGCAAGCACTTTCATCTCGGAATGAATAAGCTCTCAGATGATTCCACTGCTGAGATAGAAACTTCCAGGGATCTATCTTACAACAAGGGCCTGACAGGACCACTCCCAGCAGAAATTGGGAGTTTAAAGAAGCTATCTAACATAATTCTGGTTGGTTGCAGCTTCTCTGGTCTCATCCCTCCTACTGTAGGGTCCCTACAGGAGCTAGTATATATGTCTCTGAACTCTGGGAGGATACCATCTTCTATTGGTAGTCTGTCTAGACTATATTGGCTGGATCTAGCTGACAACCTTGAAGGACCCATCTCAGTCTCTGATAGTGGTGAACCTGGTCTTGACATTCTCAGTCATTGCAAGCACTTTCATCTCGGAATGAATAAGCTCTCAGGTACAATGCCATCAAAGCTTTTTAGCTCAAACATGAGCCTGATACATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

282

Amino Acids

29.66

Weight (kDa)

5.18

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 168 - 231 8.5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 84
AclWI GGATC 4 cut(s) 135, 342, 486, 693
AfaI GTAC 1 cut(s) 799
AfiI CCNNNNNNNGG 3 cut(s) 42, 245, 596
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 2 cut(s) 353, 704
AjnI CCWGG 4 cut(s) 122, 385, 473, 736
Alw26I GTCTC 7 cut(s) 22, 233, 279, 373, 584, 630, 724
AlwI GGATC 4 cut(s) 135, 342, 486, 693
AlwNI CAGNNNCTG 2 cut(s) 371, 722
AoxI GGCC 3 cut(s) 44, 145, 496
ApeKI GCWGC 3 cut(s) 74, 216, 567
AspS9I GGNCC 8 cut(s) 145, 155, 249, 356, 496, 506, 600, 707
AsuHPI GGTGA 3 cut(s) 54, 392, 743
AvaII GGWCC 6 cut(s) 155, 249, 356, 506, 600, 707
BaeI ACNNNNGTAYC 1 cut(s) 830
BbvI GCAGC 3 cut(s) 61, 228, 579
BccI CCATC 6 cut(s) 58, 304, 368, 655, 719, 814
BciT130I CCWGG 4 cut(s) 124, 387, 475, 738
BciVI GTATCC 2 cut(s) 285, 636
BcoDI GTCTC 7 cut(s) 22, 233, 279, 373, 584, 630, 724
BfaI CTAG 6 cut(s) 263, 318, 338, 614, 669, 689
BfmI CTRYAG 4 cut(s) 243, 254, 594, 605
BfuI GTATCC 2 cut(s) 285, 636
BisI GCNGC 5 cut(s) 47, 75, 85, 217, 568
BlsI GCNGC 5 cut(s) 48, 76, 86, 218, 569
Bme1390I CCNGG 4 cut(s) 124, 387, 475, 738
Bme18I GGWCC 6 cut(s) 155, 249, 356, 506, 600, 707
BmgT120I GGNCC 8 cut(s) 145, 155, 249, 356, 496, 506, 600, 707
BmiI GGNNCC 6 cut(s) 250, 251, 358, 601, 602, 709
BmrFI CCNGG 4 cut(s) 124, 387, 475, 738
BmsI GCATC 2 cut(s) 61, 96
BsaI GGTCTC 2 cut(s) 233, 584
BsaJI CCNNGG 2 cut(s) 123, 474
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 245, 596
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 2 cut(s) 406, 757
BseBI CCWGG 4 cut(s) 124, 387, 475, 738
BseDI CCNNGG 2 cut(s) 123, 474
BseGI GGATG 4 cut(s) 76, 100, 231, 582
BseLI CCNNNNNNNGG 3 cut(s) 42, 245, 596
BseMI GCAATG 2 cut(s) 406, 757
BseMII CTCAG 8 cut(s) 99, 378, 415, 450, 456, 729, 766, 807
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 61, 228, 579
BseYI CCCAGC 2 cut(s) 163, 514
BshFI GGCC 3 cut(s) 46, 147, 498
BslFI GGGAC 2 cut(s) 235, 586
BslI CCNNNNNNNGG 3 cut(s) 42, 245, 596
BsmAI GTCTC 7 cut(s) 22, 233, 279, 373, 584, 630, 724
BsmFI GGGAC 2 cut(s) 235, 586
BsnI GGCC 3 cut(s) 46, 147, 498
Bso31I GGTCTC 2 cut(s) 233, 584
Bsp143I GATC 4 cut(s) 127, 334, 478, 685
BspACI CCGC 2 cut(s) 47, 84
BspANI GGCC 3 cut(s) 46, 147, 498
BspCNI CTCAG 8 cut(s) 100, 377, 414, 451, 455, 728, 765, 806
BspLI GGNNCC 6 cut(s) 250, 251, 358, 601, 602, 709
BspPI GGATC 4 cut(s) 135, 342, 486, 693
BspTNI GGTCTC 2 cut(s) 233, 584
BsrDI GCAATG 2 cut(s) 406, 757
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 123, 474
BssMI GATC 4 cut(s) 127, 334, 478, 685
Bst2UI CCWGG 4 cut(s) 124, 387, 475, 738
Bst4CI ACNGT 2 cut(s) 244, 595
BstC8I GCNNGC 2 cut(s) 413, 764
BstDEI CTNAG 8 cut(s) 108, 364, 401, 442, 459, 715, 752, 793
BstENI CCTNNNNNAGG 3 cut(s) 40, 243, 594
BstF5I GGATG 4 cut(s) 76, 100, 231, 582
BstKTI GATC 4 cut(s) 130, 337, 481, 688
BstMAI GTCTC 7 cut(s) 22, 233, 279, 373, 584, 630, 724
BstMBI GATC 4 cut(s) 127, 334, 478, 685
BstMWI GCNNNNNNNGC 1 cut(s) 811
BstNI CCWGG 4 cut(s) 124, 387, 475, 738
BstNSI RCATGY 1 cut(s) 845
BstSCI CCNGG 4 cut(s) 122, 385, 473, 736
BstSFI CTRYAG 4 cut(s) 243, 254, 594, 605
BstV1I GCAGC 3 cut(s) 61, 228, 579
BstX2I RGATCY 4 cut(s) 127, 334, 478, 685
BstYI RGATCY 4 cut(s) 127, 334, 478, 685
BsuI GTATCC 2 cut(s) 285, 636
BsuRI GGCC 3 cut(s) 46, 147, 498
BtsCI GGATG 4 cut(s) 76, 100, 231, 582
BtsI GCAGTG 2 cut(s) 102, 453
BtsIMutI CAGTG 3 cut(s) 72, 102, 453
Cac8I GCNNGC 2 cut(s) 413, 764
CaiI CAGNNNCTG 2 cut(s) 371, 722
Cfr13I GGNCC 8 cut(s) 145, 155, 249, 356, 496, 506, 600, 707
CsiI ACCWGGT 2 cut(s) 385, 736
Csp6I GTAC 1 cut(s) 798
CviAII CATG 3 cut(s) 91, 829, 842
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 8 cut(s) 108, 364, 401, 442, 459, 715, 752, 793
DpnI GATC 4 cut(s) 129, 336, 480, 687
DpnII GATC 4 cut(s) 127, 334, 478, 685
DraI TTTAAA 2 cut(s) 183, 534
Eco31I GGTCTC 2 cut(s) 233, 584
Eco47I GGWCC 6 cut(s) 155, 249, 356, 506, 600, 707
EcoNI CCTNNNNNAGG 3 cut(s) 40, 243, 594
EcoO109I RGGNCCY 6 cut(s) 145, 249, 356, 496, 600, 707
EcoRII CCWGG 4 cut(s) 122, 385, 473, 736
FaeI CATG 3 cut(s) 94, 832, 845
FaqI GGGAC 2 cut(s) 235, 586
FatI CATG 3 cut(s) 90, 828, 841
Fnu4HI GCNGC 5 cut(s) 47, 75, 85, 217, 568
FokI GGATG 4 cut(s) 83, 107, 218, 569
Fsp4HI GCNGC 5 cut(s) 47, 75, 85, 217, 568
FspBI CTAG 6 cut(s) 263, 318, 338, 614, 669, 689
GluI GCNGC 5 cut(s) 47, 75, 85, 217, 568
GsaI CCCAGC 2 cut(s) 167, 518
HaeIII GGCC 3 cut(s) 46, 147, 498
Hin1II CATG 3 cut(s) 94, 832, 845
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 2 cut(s) 98, 449
HphI GGTGA 3 cut(s) 54, 392, 743
Hpy166II GTNNAC 2 cut(s) 383, 734
Hpy188I TCNGA 7 cut(s) 279, 373, 428, 445, 630, 724, 779
Hpy188III TCNNGA 4 cut(s) 318, 392, 669, 743
Hpy8I GTNNAC 2 cut(s) 383, 734
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 347, 698
HpyCH4III ACNGT 2 cut(s) 244, 595
HpyCH4V TGCA 4 cut(s) 216, 411, 567, 762
HpyF10VI GCNNNNNNNGC 1 cut(s) 811
HpyF3I CTNAG 8 cut(s) 108, 364, 401, 442, 459, 715, 752, 793
Hsp92II CATG 3 cut(s) 94, 832, 845
KflI GGGWCCC 2 cut(s) 249, 600
Kzo9I GATC 4 cut(s) 127, 334, 478, 685
LmnI GCTCC 2 cut(s) 259, 610
Lsp1109I GCAGC 3 cut(s) 61, 228, 579
LweI GCATC 2 cut(s) 61, 96
MabI ACCWGGT 2 cut(s) 385, 736
MaeI CTAG 6 cut(s) 263, 318, 338, 614, 669, 689
MaeIII GTNAC 1 cut(s) 60
MalI GATC 4 cut(s) 129, 336, 480, 687
MboI GATC 4 cut(s) 127, 334, 478, 685
MboII GAAGA 2 cut(s) 291, 642
MflI RGATCY 4 cut(s) 127, 334, 478, 685
MluCI AATT 4 cut(s) 171, 201, 522, 552
MnlI CCTC 6 cut(s) 36, 46, 246, 282, 597, 633
MseI TTAA 2 cut(s) 182, 533
MspR9I CCNGG 4 cut(s) 124, 387, 475, 738
MvaI CCWGG 4 cut(s) 124, 387, 475, 738
MwoI GCNNNNNNNGC 1 cut(s) 811
NdeII GATC 4 cut(s) 127, 334, 478, 685
NlaIII CATG 3 cut(s) 94, 832, 845
NlaIV GGNNCC 6 cut(s) 250, 251, 358, 601, 602, 709
NmuCI GTSAC 1 cut(s) 60
NspI RCATGY 1 cut(s) 845
PciI ACATGT 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 2 cut(s) 98, 449
PkrI GCNGC 5 cut(s) 48, 76, 86, 218, 569
PpuMI RGGWCCY 4 cut(s) 249, 356, 600, 707
PscI ACATGT 1 cut(s) 841
Psp5II RGGWCCY 4 cut(s) 249, 356, 600, 707
Psp6I CCWGG 4 cut(s) 122, 385, 473, 736
PspFI CCCAGC 2 cut(s) 163, 514
PspGI CCWGG 4 cut(s) 122, 385, 473, 736
PspN4I GGNNCC 6 cut(s) 250, 251, 358, 601, 602, 709
PspPI GGNCC 8 cut(s) 145, 155, 249, 356, 496, 506, 600, 707
PspPPI RGGWCCY 4 cut(s) 249, 356, 600, 707
PstNI CAGNNNCTG 2 cut(s) 371, 722
PsuI RGATCY 4 cut(s) 127, 334, 478, 685
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
SaqAI TTAA 2 cut(s) 182, 533
SatI GCNGC 5 cut(s) 47, 75, 85, 217, 568
Sau3AI GATC 4 cut(s) 127, 334, 478, 685
Sau96I GGNCC 8 cut(s) 145, 155, 249, 356, 496, 506, 600, 707
ScrFI CCNGG 4 cut(s) 124, 387, 475, 738
SexAI ACCWGGT 2 cut(s) 385, 736
SfaNI GCATC 2 cut(s) 61, 96
SfcI CTRYAG 4 cut(s) 243, 254, 594, 605
SinI GGWCC 6 cut(s) 155, 249, 356, 506, 600, 707
Sse9I AATT 4 cut(s) 171, 201, 522, 552
SsiI CCGC 2 cut(s) 47, 84
SspMI CTAG 6 cut(s) 263, 318, 338, 614, 669, 689
StyD4I CCNGG 4 cut(s) 122, 385, 473, 736
TaaI ACNGT 2 cut(s) 244, 595
TaqI TCGA 1 cut(s) 41
TasI AATT 4 cut(s) 171, 201, 522, 552
TauI GCSGC 2 cut(s) 49, 87
TfiI GAWTC 2 cut(s) 98, 449
Tru1I TTAA 2 cut(s) 182, 533
Tru9I TTAA 2 cut(s) 182, 533
TscAI CASTG 3 cut(s) 72, 109, 460
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 3 cut(s) 74, 216, 567
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 4 cut(s) 410, 446, 761, 797
TspRI CASTG 3 cut(s) 72, 109, 460
VpaK11BI GGWCC 6 cut(s) 155, 249, 356, 506, 600, 707
XagI CCTNNNNNAGG 3 cut(s) 40, 243, 594
XbaI TCTAGA 2 cut(s) 317, 668
XceI RCATGY 1 cut(s) 845
XspI CTAG 6 cut(s) 263, 318, 338, 614, 669, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.