Rw3G019640

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006422
Physical Location & Seq
Reverse (-)
22713350 .. 22717935
4586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019640.1

Sequence Viewer

Length: 705 bp
ATGATATATTTTGAATATGTGAAGGTGTTAGTAAAAAGAAAATCAAACATGCATTGCTTTAATGTTATTTCACATATTAATGATGCAATATTTGTTGAATTATCACTACTACAGAAAATGAATCAGACGACACCTCTCATACGACGGTACATTGTTTTCCTGGATGCTGCTATTGGCGGCATCATGGGTACTTTCACCGGCGACATTTCCTCCTCTCTCCCCACTCCTCTGCCTCAGGCCAGCCACTCCTCTCGTCGTCTCCTTTACTGTAGCAAAATCTTGAGCAATTGGATAAGTATTCTAATTCTTCTTTCATGTTTCTCTTCATCTAGGGATCTATCTTACAACAAGGGCCTGACAGGACCACTCCCAGCAGAAATTGGGAGTTTGAAGAAGCTATCTAACATAATTCTGGTTGGTTGCAGCTTCTCTGGTCTCATCCCTCCTACTGTAGGGTCCCTACAGGAGCTAGTATATATGTCTCTGAACTCTGGGAGGATACCATCTTCTATTGGTAGTCTGTCTAGACTATATTGGCTGGATCTAGCTGACAACCTTGAAGGACCCATCTCAGTCTCTGATAGTGGTGAACCTGGTCTTGACATTCTCAGTCATTGCAAGCACTTTCATCTCGGAATGAATAAGCTCTCAGGTACAATGCCATCAAAGCTTTTTAGCTCAAACATAAGCCTGATACATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

25.62

Weight (kDa)

8.98

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 121 - 183 7.8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 342, 549
AfaI GTAC 3 cut(s) 149, 190, 655
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 4 cut(s) 14, 98, 391, 560
AjnI CCWGG 2 cut(s) 159, 592
AluBI AGCT 7 cut(s) 397, 426, 469, 548, 646, 670, 678
AluI AGCT 7 cut(s) 397, 426, 469, 548, 646, 670, 678
Alw26I GTCTC 4 cut(s) 263, 440, 486, 580
AlwI GGATC 2 cut(s) 342, 549
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 2 cut(s) 237, 352
ApeKI GCWGC 2 cut(s) 167, 423
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 4 cut(s) 352, 362, 456, 563
AsuHPI GGTGA 2 cut(s) 187, 599
AvaII GGWCC 3 cut(s) 362, 456, 563
AxyI CCTNAGG 1 cut(s) 234
BaeI ACNNNNGTAYC 1 cut(s) 686
BbvI GCAGC 2 cut(s) 154, 435
BccI CCATC 3 cut(s) 511, 575, 670
BciT130I CCWGG 2 cut(s) 161, 594
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 4 cut(s) 263, 440, 486, 580
BfaI CTAG 4 cut(s) 330, 470, 525, 545
BfmI CTRYAG 4 cut(s) 110, 268, 450, 461
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 3 cut(s) 168, 178, 424
BlsI GCNGC 3 cut(s) 169, 179, 425
Bme1390I CCNGG 2 cut(s) 161, 594
Bme18I GGWCC 3 cut(s) 362, 456, 563
BmgT120I GGNCC 4 cut(s) 352, 362, 456, 563
BmiI GGNNCC 3 cut(s) 457, 458, 565
BmrFI CCNGG 2 cut(s) 161, 594
BmsI GCATC 3 cut(s) 73, 154, 189
BpuEI CTTGAG 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 52, 613
BseBI CCWGG 2 cut(s) 161, 594
BseGI GGATG 2 cut(s) 169, 438
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 2 cut(s) 52, 613
BseMII CTCAG 4 cut(s) 248, 585, 622, 663
BseRI GAGGAG 3 cut(s) 202, 216, 238
BseXI GCAGC 2 cut(s) 154, 435
BseYI CCCAGC 1 cut(s) 370
BshFI GGCC 2 cut(s) 239, 354
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 4 cut(s) 263, 440, 486, 580
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 2 cut(s) 239, 354
Bso31I GGTCTC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 334, 541
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 239, 354
BspCNI CTCAG 4 cut(s) 247, 584, 621, 662
BspLI GGNNCC 3 cut(s) 457, 458, 565
BspPI GGATC 2 cut(s) 342, 549
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 2 cut(s) 52, 613
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 2 cut(s) 334, 541
Bst2UI CCWGG 2 cut(s) 161, 594
Bst4CI ACNGT 3 cut(s) 147, 269, 451
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 241, 620
BstDEI CTNAG 4 cut(s) 234, 571, 608, 649
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 169, 438
BstKTI GATC 2 cut(s) 337, 544
BstMAI GTCTC 4 cut(s) 263, 440, 486, 580
BstMBI GATC 2 cut(s) 334, 541
BstMWI GCNNNNNNNGC 1 cut(s) 667
BstNI CCWGG 2 cut(s) 161, 594
BstNSI RCATGY 2 cut(s) 52, 701
BstSCI CCNGG 2 cut(s) 159, 592
BstSFI CTRYAG 4 cut(s) 110, 268, 450, 461
BstV1I GCAGC 2 cut(s) 154, 435
BstX2I RGATCY 2 cut(s) 334, 541
BstYI RGATCY 2 cut(s) 334, 541
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 2 cut(s) 239, 354
BtsCI GGATG 2 cut(s) 169, 438
Cac8I GCNNGC 2 cut(s) 241, 620
CaiI CAGNNNCTG 1 cut(s) 578
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 4 cut(s) 352, 362, 456, 563
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 3 cut(s) 148, 189, 654
CviAII CATG 4 cut(s) 49, 184, 315, 698
CviQI GTAC 3 cut(s) 148, 189, 654
DdeI CTNAG 4 cut(s) 234, 571, 608, 649
DpnI GATC 2 cut(s) 336, 543
DpnII GATC 2 cut(s) 334, 541
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 3 cut(s) 362, 456, 563
Eco81I CCTNAGG 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoO109I RGGNCCY 3 cut(s) 352, 456, 563
EcoRII CCWGG 2 cut(s) 159, 592
EcoT22I ATGCAT 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 4 cut(s) 52, 187, 318, 701
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 48, 183, 314, 697
Fnu4HI GCNGC 3 cut(s) 168, 178, 424
FokI GGATG 2 cut(s) 176, 425
Fsp4HI GCNGC 3 cut(s) 168, 178, 424
FspBI CTAG 4 cut(s) 330, 470, 525, 545
GluI GCNGC 3 cut(s) 168, 178, 424
GsaI CCCAGC 1 cut(s) 374
HaeIII GGCC 2 cut(s) 239, 354
HapII CCGG 1 cut(s) 198
Hin1II CATG 4 cut(s) 52, 187, 318, 701
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 187, 599
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 126, 486, 580, 635
Hpy188III TCNNGA 3 cut(s) 280, 525, 599
Hpy8I GTNNAC 1 cut(s) 590
Hpy99I CGWCG 2 cut(s) 147, 258
HpyAV CCTTC 2 cut(s) 16, 554
HpyCH4III ACNGT 3 cut(s) 147, 269, 451
HpyCH4V TGCA 4 cut(s) 52, 86, 423, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 667
HpyF3I CTNAG 4 cut(s) 234, 571, 608, 649
Hsp92II CATG 4 cut(s) 52, 187, 318, 701
KflI GGGWCCC 1 cut(s) 456
Kzo9I GATC 2 cut(s) 334, 541
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 2 cut(s) 154, 435
LweI GCATC 3 cut(s) 73, 154, 189
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 4 cut(s) 330, 470, 525, 545
MalI GATC 2 cut(s) 336, 543
MboI GATC 2 cut(s) 334, 541
MboII GAAGA 4 cut(s) 299, 315, 403, 498
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 2 cut(s) 334, 541
MluCI AATT 5 cut(s) 98, 286, 303, 378, 408
MnlI CCTC 8 cut(s) 144, 220, 223, 237, 243, 259, 453, 489
Mph1103I ATGCAT 1 cut(s) 54
MseI TTAA 2 cut(s) 60, 78
MslI CAYNNNNRTG 1 cut(s) 78
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 161, 594
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 2 cut(s) 161, 594
MwoI GCNNNNNNNGC 1 cut(s) 667
NdeII GATC 2 cut(s) 334, 541
NlaIII CATG 4 cut(s) 52, 187, 318, 701
NlaIV GGNNCC 3 cut(s) 457, 458, 565
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 2 cut(s) 52, 701
PciI ACATGT 1 cut(s) 697
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 169, 179, 425
PpuMI RGGWCCY 2 cut(s) 456, 563
PscI ACATGT 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 78
Psp5II RGGWCCY 2 cut(s) 456, 563
Psp6I CCWGG 2 cut(s) 159, 592
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 2 cut(s) 159, 592
PspN4I GGNNCC 3 cut(s) 457, 458, 565
PspPI GGNCC 4 cut(s) 352, 362, 456, 563
PspPPI RGGWCCY 2 cut(s) 456, 563
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 2 cut(s) 334, 541
RsaI GTAC 3 cut(s) 149, 190, 655
RsaNI GTAC 3 cut(s) 148, 189, 654
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 60, 78
SatI GCNGC 3 cut(s) 168, 178, 424
Sau3AI GATC 2 cut(s) 334, 541
Sau96I GGNCC 4 cut(s) 352, 362, 456, 563
ScrFI CCNGG 2 cut(s) 161, 594
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 3 cut(s) 73, 154, 189
SfcI CTRYAG 4 cut(s) 110, 268, 450, 461
SgrAI CRCCGGYG 1 cut(s) 197
SinI GGWCC 3 cut(s) 362, 456, 563
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 98, 286, 303, 378, 408
SsiI CCGC 1 cut(s) 177
SspI AATATT 1 cut(s) 90
SspMI CTAG 4 cut(s) 330, 470, 525, 545
StyD4I CCNGG 2 cut(s) 159, 592
TaaI ACNGT 3 cut(s) 147, 269, 451
TasI AATT 5 cut(s) 98, 286, 303, 378, 408
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 60, 78
Tru9I TTAA 2 cut(s) 60, 78
TseI GCWGC 2 cut(s) 167, 423
TspDTI ATGAA 5 cut(s) 134, 303, 315, 617, 653
VpaK11BI GGWCC 3 cut(s) 362, 456, 563
VspI ATTAAT 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 450
XbaI TCTAGA 1 cut(s) 524
XceI RCATGY 2 cut(s) 52, 701
XspI CTAG 4 cut(s) 330, 470, 525, 545
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.