Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006422

Physical Location & Seq

Genomic Coordinates Forward (+)

69355 .. 71500

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG000200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATTCCGAGTCTCGAGAAAGAAAAGCAAGTGACTTTTCTGGAGATGATGAACGAGCTCCTCCCCCACCAATACCAGATCCAAGAGATCAACCGCCTCACTGTAGCCTACTTCGTCGTCTCCAGCCTCGACCTCCTCTGCGCTCTCCACCGCTTGCGTCATCTCTCTCCTCCTCAATTGACAAGGACACAGTTGCCGATTGGGTTCTGTCACTACAAGCTTACCCAAAAGACAACGACCAAGTCAACAATGATGAAGTTAGTTCAATACCCATAGTGGATGACAATGATTCGTTGCTGGATGTTTATTCACGAAGGGATCCCATACCTTCAGTAATCAGTGAGGCAGCGGTGGATTCTGAGAATGCTGTAGCTGCCGTAAATGTAAGTACTTGGAGCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.81

Weight (kDa)

4.39

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325521 RchiOBHm_Chr1g0337951 RchiOBHm_Chr2g0166631 RchiOBHm_Chr3g0479841 RchiOBHm_Chr4g0392621 RchiOBHm_Chr4g0397291 RchiOBHm_Chr4g0400561 RchiOBHm_Chr4g0418031 RchiOBHm_Chr5g0048041 RchiOBHm_Chr5g0079221 RchiOBHm_Chr6g0251371 RchiOBHm_Chr6g0257241 RchiOBHm_Chr7g0222971 RchiOBHm_Chr7g0241581
rosa_laevigata	RLG00000034139
rosa_multiflora	Rmu_sc0001029.1_g000028 Rmu_sc0002286.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036370 Rroxscaffold_5G00354060 Rroxscaffold_7G00195570
rosa_samantha	Rh4AG016700 Rh4CG000200 Rh5AG299800 Rh5DG316500 Rh6AG127600 Rh7AG017800
rosa_wichuraiana	Rw3G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	95, 152, 350
AclWI	GGATC	3 cut(s)	74, 314, 327
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	267
AluBI	AGCT	3 cut(s)	59, 221, 374
AluI	AGCT	3 cut(s)	59, 221, 374
Alw21I	GWGCWC	2 cut(s)	61, 401
Alw26I	GTCTC	2 cut(s)	18, 125
AlwI	GGATC	3 cut(s)	74, 314, 327
Ama87I	CYCGRG	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	347, 374
AspLEI	GCGC	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	61, 401
BbvI	GCAGC	2 cut(s)	359, 361
BceAI	ACGGC	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	18, 125
BfmI	CTRYAG	2 cut(s)	103, 369
BisI	GCNGC	2 cut(s)	348, 375
BlsI	GCNGC	2 cut(s)	349, 376
BmcAI	AGTACT	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	63, 107
BseGI	GGATG	2 cut(s)	286, 307
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	4 cut(s)	51, 126, 160, 163
BseXI	GCAGC	2 cut(s)	359, 361
BsiHKAI	GWGCWC	2 cut(s)	61, 401
BsiHKCI	CYCGRG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	18, 125
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	61, 401
Bsp143I	GATC	3 cut(s)	79, 88, 319
BspACI	CCGC	3 cut(s)	95, 152, 350
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	3 cut(s)	74, 314, 327
BssMI	GATC	3 cut(s)	79, 88, 319
Bst4CI	ACNGT	2 cut(s)	104, 193
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	286, 307
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	82, 91, 322
BstMAI	GTCTC	2 cut(s)	18, 125
BstMBI	GATC	3 cut(s)	79, 88, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	103, 369
BstV1I	GCAGC	2 cut(s)	359, 361
BstX2I	RGATCY	2 cut(s)	79, 319
BstYI	RGATCY	2 cut(s)	79, 319
BtsCI	GGATG	2 cut(s)	286, 307
BtsIMutI	CAGTG	2 cut(s)	100, 346
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	144
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	5 cut(s)	59, 108, 127, 221, 374
CviKI_1	RGCY	5 cut(s)	59, 108, 127, 221, 374
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	81, 90, 321
DpnII	GATC	3 cut(s)	79, 88, 319
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	125
FaiI	YATR	2 cut(s)	275, 326
Fnu4HI	GCNGC	2 cut(s)	348, 375
FokI	GGATG	2 cut(s)	293, 314
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	348, 375
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	348, 375
GsuI	CTGGAG	2 cut(s)	63, 107
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	4 cut(s)	5, 11, 290, 356
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	10, 361
Hpy188III	TCNNGA	4 cut(s)	15, 17, 42, 312
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	309, 339
HpyCH4III	ACNGT	2 cut(s)	104, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	360
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	79, 88, 319
LmnI	GCTCC	2 cut(s)	64, 396
LpnPI	CCDG	4 cut(s)	27, 90, 137, 284
Lsp1109I	GCAGC	2 cut(s)	359, 361
MaeIII	GTNAC	2 cut(s)	32, 210
MalI	GATC	3 cut(s)	81, 90, 321
MboI	GATC	3 cut(s)	79, 88, 319
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	2 cut(s)	79, 319
MhlI	GDGCHC	2 cut(s)	61, 401
MluCI	AATT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	8 cut(s)	72, 108, 138, 144, 147, 181, 184, 337
MspA1I	CMGCKG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	3 cut(s)	79, 88, 319
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	32, 210
PaeR7I	CTCGAG	1 cut(s)	15
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	5, 290, 356
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	349, 376
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	79, 319
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	61
SatI	GCNGC	2 cut(s)	348, 375
Sau3AI	GATC	3 cut(s)	79, 88, 319
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	61, 401
SetI	ASST	5 cut(s)	61, 136, 223, 331, 376
SfcI	CTRYAG	2 cut(s)	103, 369
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	95, 152, 350
SstI	GAGCTC	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	104, 193
TaqI	TCGA	2 cut(s)	16, 130
TasI	AATT	1 cut(s)	177
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	5, 290, 356
TscAI	CASTG	2 cut(s)	107, 346
TseFI	GTSAC	2 cut(s)	32, 210
TseI	GCWGC	2 cut(s)	347, 374
Tsp45I	GTSAC	2 cut(s)	32, 210
TspDTI	ATGAA	2 cut(s)	66, 270
TspRI	CASTG	2 cut(s)	107, 346
Tth111I	GACNNNGTC	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.