Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002286.1

Orthogroup ID

OG0006422

Physical Location & Seq

Genomic Coordinates Forward (+)

79817 .. 81469

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002286.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgaacattcttatggatattatcttggaggctactatattggctggatcaaatagtggtgaacctggtctggacattctcagtcattgcaagcactttcatctcggaatgaataagctctcaggcacaattccatcaaagcttttgagctcaaacatgagcctgatacatgtgctcttcgaaagtaatcaactcattggcagcatcctttccagccttggacttgtaaagtctttggaggttgtgcaatttgatagaaacatgttaactgggcgatttgattacaaatgtctctcagctgtgagtagattaaaaccttgccagatattactttatactgtttcactagagttgttaccgttcattatgaagaaccttatagaggcctctcgtgatcatattcttagattcttgtctaataacaagctaagcggccctgctcccaaccttactggcatgaccttctccattatgtgcaagttacaaataatggagaaggttcatgccagttatgttactttagtggctctagtactttcagcaccaacttcattgtcgcctcttggttccctggttgatccggttactatccagtttagagcctctgaatcatcaattattgaaaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.02

Weight (kDa)

8.36

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325521 RchiOBHm_Chr1g0337951 RchiOBHm_Chr2g0166631 RchiOBHm_Chr3g0479841 RchiOBHm_Chr4g0392621 RchiOBHm_Chr4g0397291 RchiOBHm_Chr4g0400561 RchiOBHm_Chr4g0418031 RchiOBHm_Chr5g0048041 RchiOBHm_Chr5g0079221 RchiOBHm_Chr6g0251371 RchiOBHm_Chr6g0257241 RchiOBHm_Chr7g0222971 RchiOBHm_Chr7g0241581
rosa_laevigata	RLG00000034139
rosa_multiflora	Rmu_sc0001029.1_g000028 Rmu_sc0002286.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036370 Rroxscaffold_5G00354060 Rroxscaffold_7G00195570
rosa_samantha	Rh4AG016700 Rh4CG000200 Rh5AG299800 Rh5DG316500 Rh6AG127600 Rh7AG017800
rosa_wichuraiana	Rw3G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	55, 572
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	2 cut(s)	169, 261
AgsI	TTSAA	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	64, 570
AluBI	AGCT	5 cut(s)	118, 142, 150, 299, 427
AluI	AGCT	5 cut(s)	118, 142, 150, 299, 427
Alw21I	GWGCWC	2 cut(s)	152, 177
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	55, 572
AoxI	GGCC	2 cut(s)	384, 433
ApeKI	GCWGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	152, 177
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	66, 572
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	3 cut(s)	347, 530, 631
BisI	GCNGC	2 cut(s)	202, 433
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	2 cut(s)	203, 434
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	66, 572
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	66, 572
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	217, 570
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	4 cut(s)	274, 457, 507, 592
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	66, 572
BseDI	CCNNGG	2 cut(s)	217, 570
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	94, 135, 309
BseNI	ACTGG	4 cut(s)	274, 457, 507, 592
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	386, 435
BsiHKAI	GWGCWC	2 cut(s)	152, 177
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	386, 435
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	152, 177
Bsp143I	GATC	3 cut(s)	47, 394, 577
Bsp1720I	GCTNAGC	1 cut(s)	428
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	2 cut(s)	386, 435
BspCNI	CTCAG	3 cut(s)	93, 134, 308
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	55, 572
BspQI	GCTCTTC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	4 cut(s)	274, 457, 507, 592
BssECI	CCNNGG	2 cut(s)	217, 570
BssMI	GATC	3 cut(s)	47, 394, 577
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	66, 572
Bst4CI	ACNGT	2 cut(s)	340, 360
Bst6I	CTCTTC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	5 cut(s)	80, 121, 295, 404, 428
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	3 cut(s)	50, 397, 580
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	47, 394, 577
BstNI	CCWGG	2 cut(s)	66, 572
BstNSI	RCATGY	2 cut(s)	173, 265
BstSCI	CCNGG	2 cut(s)	64, 570
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	386, 435
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	434
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	5 cut(s)	157, 170, 262, 457, 503
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	5 cut(s)	80, 121, 295, 404, 428
DpnI	GATC	3 cut(s)	49, 396, 579
DpnII	GATC	3 cut(s)	47, 394, 577
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	64, 570
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	5 cut(s)	160, 173, 265, 460, 506
FatI	CATG	5 cut(s)	156, 169, 261, 456, 502
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	202, 433
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	202, 433
FspBI	CTAG	3 cut(s)	347, 530, 631
GluI	GCNGC	2 cut(s)	202, 433
HaeIII	GGCC	2 cut(s)	386, 435
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	5 cut(s)	160, 173, 265, 460, 506
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	408, 608
HpaI	GTTAAC	1 cut(s)	267
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	62, 267
Hpy188I	TCNGA	2 cut(s)	107, 607
Hpy188III	TCNNGA	2 cut(s)	71, 392
Hpy8I	GTNNAC	2 cut(s)	62, 267
HpyAV	CCTTC	2 cut(s)	472, 490
HpyCH4III	ACNGT	2 cut(s)	340, 360
HpyCH4V	TGCA	3 cut(s)	90, 247, 477
HpyF3I	CTNAG	5 cut(s)	80, 121, 295, 404, 428
Hsp92II	CATG	5 cut(s)	160, 173, 265, 460, 506
Ksp22I	TGATCA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	47, 394, 577
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	213
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	3 cut(s)	347, 530, 631
MaeIII	GTNAC	4 cut(s)	354, 480, 514, 583
MalI	GATC	3 cut(s)	49, 396, 579
MboI	GATC	3 cut(s)	47, 394, 577
MboII	GAAGA	2 cut(s)	169, 382
MhlI	GDGCHC	2 cut(s)	152, 177
MluCI	AATT	3 cut(s)	129, 248, 615
MnlI	CCTC	6 cut(s)	22, 232, 376, 397, 570, 613
MseI	TTAA	2 cut(s)	266, 311
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	66, 572
MvaI	CCWGG	2 cut(s)	66, 572
NdeII	GATC	3 cut(s)	47, 394, 577
NlaIII	CATG	5 cut(s)	160, 173, 265, 460, 506
NlaIV	GGNNCC	1 cut(s)	568
NspI	RCATGY	2 cut(s)	173, 265
NspV	TTCGAA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	2 cut(s)	169, 261
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	408, 608
PkrI	GCNGC	2 cut(s)	203, 434
PscI	ACATGT	2 cut(s)	169, 261
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	64, 570
PspGI	CCWGG	2 cut(s)	64, 570
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	266, 311
SatI	GCNGC	2 cut(s)	202, 433
Sau3AI	GATC	3 cut(s)	47, 394, 577
Sau96I	GGNCC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	534
ScrFI	CCNGG	2 cut(s)	66, 572
SduI	GDGCHC	2 cut(s)	152, 177
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	129, 248, 615
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	3 cut(s)	347, 530, 631
SstI	GAGCTC	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	64, 570
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	340, 360
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	129, 248, 615
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	408, 608
Tru1I	TTAA	2 cut(s)	266, 311
Tru9I	TTAA	2 cut(s)	266, 311
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	7 cut(s)	17, 89, 125, 352, 383, 491, 540
XagI	CCTNNNNNAGG	1 cut(s)	380
XceI	RCATGY	2 cut(s)	173, 265
XspI	CTAG	3 cut(s)	347, 530, 631
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.