Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006422

Physical Location & Seq

Genomic Coordinates Reverse (-)

19281141 .. 19293675

Gene Structure 12535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG127600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATTCCGAGTCTCGAGAGAGAAAAGCAAGTGACTTTTCTGGAGATGATGAACGAGCTCCTCCCCCACCAATACCAGATCCAAGAGATCAACCGCCTCACTGTCGCCTACTTTGTCGTCTCCAGCCTCGACCTCCTCTGCGCTCTCTACCGCTTGCGTCTCTGAACTCTGGGAGGATACCATCTTCTATTGGTAGTCTGTCTAGACTATATTGGCTGGATCTAGCTGACAACCTTGAAGGACCCATCTCAGTCTCTGATAGTGGTGAACCTGGTCTTGACATTCTCAGTCATTGCAAGCACTTTCATCTCGGAATGAATAAGCTCTCAGGTACAATGCCATCAAAGCTTTTTAGCTCAAACATAAGCCTGATACATGTATTACACAACAGATTACAAGATTCGACTCATATCACAATGCCATTACTTAACCTTCAAGTAAAGCAAACAATCAATGCAGATTTCCTTCATGATAGTGATGAGTTCATTATTGTTTCTTACATGACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase_Tyr

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

5.86

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325521 RchiOBHm_Chr1g0337951 RchiOBHm_Chr2g0166631 RchiOBHm_Chr3g0479841 RchiOBHm_Chr4g0392621 RchiOBHm_Chr4g0397291 RchiOBHm_Chr4g0400561 RchiOBHm_Chr4g0418031 RchiOBHm_Chr5g0048041 RchiOBHm_Chr5g0079221 RchiOBHm_Chr6g0251371 RchiOBHm_Chr6g0257241 RchiOBHm_Chr7g0222971 RchiOBHm_Chr7g0241581
rosa_laevigata	RLG00000034139
rosa_multiflora	Rmu_sc0001029.1_g000028 Rmu_sc0002286.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036370 Rroxscaffold_5G00354060 Rroxscaffold_7G00195570
rosa_samantha	Rh4AG016700 Rh4CG000200 Rh5AG299800 Rh5DG316500 Rh6AG127600 Rh7AG017800
rosa_wichuraiana	Rw3G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 152
AclWI	GGATC	2 cut(s)	74, 228
AfaI	GTAC	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	239, 437
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	5 cut(s)	59, 227, 325, 349, 357
AluI	AGCT	5 cut(s)	59, 227, 325, 349, 357
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	4 cut(s)	18, 125, 165, 259
AlwI	GGATC	2 cut(s)	74, 228
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	3 cut(s)	190, 254, 349
BciT130I	CCWGG	1 cut(s)	273
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	4 cut(s)	18, 125, 165, 259
BfaI	CTAG	3 cut(s)	204, 224, 511
BfuI	GTATCC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	273
BpmI	CTGGAG	2 cut(s)	63, 107
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	264, 301, 342
BseRI	GAGGAG	2 cut(s)	51, 126
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	15
BsmAI	GTCTC	4 cut(s)	18, 125, 165, 259
BsmBI	CGTCTC	2 cut(s)	125, 165
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	79, 88, 220
BspACI	CCGC	2 cut(s)	95, 152
BspCNI	CTCAG	3 cut(s)	263, 300, 341
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	74, 228
BsrDI	GCAATG	1 cut(s)	292
BssMI	GATC	3 cut(s)	79, 88, 220
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	156, 299
BstDEI	CTNAG	3 cut(s)	250, 287, 328
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	82, 91, 223
BstMAI	GTCTC	4 cut(s)	18, 125, 165, 259
BstMBI	GATC	3 cut(s)	79, 88, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	79, 220
BstYI	RGATCY	2 cut(s)	79, 220
BsuI	GTATCC	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	156, 299
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	147
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	377, 470, 502
CviJI	RGCY	8 cut(s)	59, 127, 217, 227, 325, 349, 357, 369
CviKI_1	RGCY	8 cut(s)	59, 127, 217, 227, 325, 349, 357, 369
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	3 cut(s)	250, 287, 328
DpnI	GATC	3 cut(s)	81, 90, 222
DpnII	GATC	3 cut(s)	79, 88, 220
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	61
Esp3I	CGTCTC	2 cut(s)	125, 165
FaeI	CATG	3 cut(s)	380, 473, 505
FaiI	YATR	6 cut(s)	211, 365, 378, 411, 471, 503
FatI	CATG	3 cut(s)	376, 469, 501
FriOI	GRGCYC	1 cut(s)	61
FspBI	CTAG	3 cut(s)	204, 224, 511
GlaI	GCGC	1 cut(s)	143
GsuI	CTGGAG	2 cut(s)	63, 107
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	380, 473, 505
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	5, 11, 401, 406
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	10, 165, 259, 314
Hpy188III	TCNNGA	6 cut(s)	15, 17, 42, 204, 278, 470
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	233, 443, 476
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	297, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	3 cut(s)	250, 287, 328
Hsp92II	CATG	3 cut(s)	380, 473, 505
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	79, 88, 220
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	27, 90, 137, 156, 203, 258, 285, 315, 383
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	3 cut(s)	204, 224, 511
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	81, 90, 222
MboI	GATC	3 cut(s)	79, 88, 220
MboII	GAAGA	1 cut(s)	177
MflI	RGATCY	2 cut(s)	79, 220
MhlI	GDGCHC	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	20, 400
MnlI	CCTC	6 cut(s)	72, 108, 138, 144, 147, 168
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	3 cut(s)	79, 88, 220
NlaIII	CATG	3 cut(s)	380, 473, 505
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	15
PagI	TCATGA	1 cut(s)	469
PciI	ACATGT	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	5, 401
PleI	GAGTC	2 cut(s)	19, 400
PpsI	GAGTC	2 cut(s)	19, 400
PpuMI	RGGWCCY	1 cut(s)	242
PscI	ACATGT	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	79, 220
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	79, 88, 220
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	20, 400
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	61
SexAI	ACCWGGT	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SsiI	CCGC	2 cut(s)	95, 152
SspMI	CTAG	3 cut(s)	204, 224, 511
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	16, 130, 404
TfiI	GAWTC	2 cut(s)	5, 401
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	5 cut(s)	66, 296, 332, 458, 475
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	15
XspI	CTAG	3 cut(s)	204, 224, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.