Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006422

Physical Location & Seq

Genomic Coordinates Reverse (-)

40619640 .. 40626460

Gene Structure 6821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATATGCAACGGCTCCAGGTGCTTTGTAATTCCCTATTCCACTACTGAGATAGAAACTTCCAGGGATCTATCTTACAACAAGGGCCTGACAGGACCACTCCCAGCAGAAATTGGGAGTTTGAAGAAGCTATCTAACATAATTCCGGTTGGTTGCAGCTTCTCTGGTCTCATCCCTCCTACTGTAGGGTCCCTACAGGAGCTAGTATATATGTCTCTGAACTCTGGGAGGATACCATCTTCTATTGGTAGTCTGTCTAGACTATATTGGCTGGATCTAGCTGACAACAACCTTGAAGGACCCATCCCAGTCTCTGATAGTGGTGAACCTGGTCTTGACATTCTCAGTCATTGCAAGCACTTTCATCTCGGAATGAATAAGCTCTCAGGCACAATTCCATCAAAGCTTTTGAGCTCAAACATGAGCCTGATACATGTGCTCTTCGAAAGTAATCAACTCATTGGCAGCATCCTTTCCAGCCTTGGACTTGTAAAGTCTTTGGAGGTTGTGCAATTTGATAGAAACATGTTAACTGGGCCTATTCCTCTGAGCCTCTACAGTCTTACAAATGTCTCTCAGCTCTTTATCCTAGCAGCTGAGCTCAATAATATTCGGATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.33

Weight (kDa)

6.05

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325521 RchiOBHm_Chr1g0337951 RchiOBHm_Chr2g0166631 RchiOBHm_Chr3g0479841 RchiOBHm_Chr4g0392621 RchiOBHm_Chr4g0397291 RchiOBHm_Chr4g0400561 RchiOBHm_Chr4g0418031 RchiOBHm_Chr5g0048041 RchiOBHm_Chr5g0079221 RchiOBHm_Chr6g0251371 RchiOBHm_Chr6g0257241 RchiOBHm_Chr7g0222971 RchiOBHm_Chr7g0241581
rosa_laevigata	RLG00000034139
rosa_multiflora	Rmu_sc0001029.1_g000028 Rmu_sc0002286.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036370 Rroxscaffold_5G00354060 Rroxscaffold_7G00195570
rosa_samantha	Rh4AG016700 Rh4CG000200 Rh5AG299800 Rh5DG316500 Rh6AG127600 Rh7AG017800
rosa_wichuraiana	Rw3G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	75, 282
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflIII	ACRYGT	2 cut(s)	433, 525
AgsI	TTSAA	2 cut(s)	124, 296
AjnI	CCWGG	3 cut(s)	17, 62, 328
Alw21I	GWGCWC	3 cut(s)	416, 441, 603
Alw26I	GTCTC	4 cut(s)	173, 219, 316, 577
AlwI	GGATC	2 cut(s)	75, 282
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	85, 536
ApeKI	GCWGC	3 cut(s)	156, 465, 593
AspS9I	GGNCC	5 cut(s)	85, 95, 189, 299, 536
AsuHPI	GGTGA	1 cut(s)	335
AsuII	TTCGAA	1 cut(s)	444
AvaII	GGWCC	3 cut(s)	95, 189, 299
BanII	GRGCYC	2 cut(s)	416, 603
Bbv12I	GWGCWC	3 cut(s)	416, 441, 603
BbvI	GCAGC	3 cut(s)	168, 477, 605
BccI	CCATC	3 cut(s)	244, 311, 406
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	3 cut(s)	19, 64, 330
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	4 cut(s)	173, 219, 316, 577
BfaI	CTAG	4 cut(s)	203, 258, 278, 590
BfmI	CTRYAG	3 cut(s)	183, 194, 556
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	157, 466, 594
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	3 cut(s)	158, 467, 595
Bme1390I	CCNGG	3 cut(s)	19, 64, 330
Bme18I	GGWCC	3 cut(s)	95, 189, 299
BmgT120I	GGNCC	5 cut(s)	85, 95, 189, 299, 536
BmiI	GGNNCC	4 cut(s)	16, 190, 191, 301
BmrFI	CCNGG	3 cut(s)	19, 64, 330
BmrI	ACTGGG	2 cut(s)	302, 543
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	2 cut(s)	302, 543
Bpu1102I	GCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	63, 481
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	308, 538
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	19, 64, 330
BseDI	CCNNGG	2 cut(s)	63, 481
BseGI	GGATG	3 cut(s)	171, 303, 468
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	6 cut(s)	39, 358, 399, 539, 588, 590
BseNI	ACTGG	2 cut(s)	308, 538
BseXI	GCAGC	3 cut(s)	168, 477, 605
BseYI	CCCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	87, 538
BsiHKAI	GWGCWC	3 cut(s)	416, 441, 603
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	4 cut(s)	173, 219, 316, 577
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	87, 538
Bso31I	GGTCTC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	3 cut(s)	416, 441, 603
Bsp143I	GATC	2 cut(s)	67, 274
Bsp1720I	GCTNAGC	1 cut(s)	597
BspANI	GGCC	2 cut(s)	87, 538
BspCNI	CTCAG	6 cut(s)	40, 357, 398, 540, 589, 589
BspLI	GGNNCC	4 cut(s)	16, 190, 191, 301
BspPI	GGATC	2 cut(s)	75, 282
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	308, 538
BssECI	CCNNGG	2 cut(s)	63, 481
BssMI	GATC	2 cut(s)	67, 274
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	3 cut(s)	19, 64, 330
Bst4CI	ACNGT	2 cut(s)	184, 560
Bst6I	CTCTTC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	6 cut(s)	48, 344, 385, 548, 576, 597
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	171, 303, 468
BstKTI	GATC	2 cut(s)	70, 277
BstMAI	GTCTC	4 cut(s)	173, 219, 316, 577
BstMBI	GATC	2 cut(s)	67, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	3 cut(s)	19, 64, 330
BstNSI	RCATGY	2 cut(s)	437, 529
BstSCI	CCNGG	3 cut(s)	17, 62, 328
BstSFI	CTRYAG	3 cut(s)	183, 194, 556
BstV1I	GCAGC	3 cut(s)	168, 477, 605
BstX2I	RGATCY	2 cut(s)	67, 274
BstYI	RGATCY	2 cut(s)	67, 274
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	87, 538
BtsCI	GGATG	3 cut(s)	171, 303, 468
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	5 cut(s)	85, 95, 189, 299, 536
CsiI	ACCWGGT	1 cut(s)	328
CviAII	CATG	3 cut(s)	421, 434, 526
DdeI	CTNAG	6 cut(s)	48, 344, 385, 548, 576, 597
DpnI	GATC	2 cut(s)	69, 276
DpnII	GATC	2 cut(s)	67, 274
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Ecl136II	GAGCTC	2 cut(s)	414, 601
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	416, 603
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	3 cut(s)	95, 189, 299
Eco53kI	GAGCTC	2 cut(s)	414, 601
EcoICRI	GAGCTC	2 cut(s)	414, 601
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	3 cut(s)	85, 189, 299
EcoRII	CCWGG	3 cut(s)	17, 62, 328
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	416, 603
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	424, 437, 529
FaiI	YATR	9 cut(s)	7, 140, 208, 210, 212, 265, 422, 435, 527
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	3 cut(s)	420, 433, 525
Fnu4HI	GCNGC	3 cut(s)	157, 466, 594
FokI	GGATG	3 cut(s)	158, 290, 455
FriOI	GRGCYC	2 cut(s)	416, 603
Fsp4HI	GCNGC	3 cut(s)	157, 466, 594
FspBI	CTAG	4 cut(s)	203, 258, 278, 590
GluI	GCNGC	3 cut(s)	157, 466, 594
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	87, 538
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	3 cut(s)	424, 437, 529
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HindIII	AAGCTT	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	531
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	326, 531
Hpy188I	TCNGA	5 cut(s)	219, 316, 371, 549, 615
Hpy188III	TCNNGA	2 cut(s)	258, 335
Hpy8I	GTNNAC	2 cut(s)	326, 531
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	184, 560
HpyCH4V	TGCA	4 cut(s)	9, 156, 354, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	6 cut(s)	48, 344, 385, 548, 576, 597
Hsp92II	CATG	3 cut(s)	424, 437, 529
KflI	GGGWCCC	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	67, 274
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	2 cut(s)	20, 199
Lsp1109I	GCAGC	3 cut(s)	168, 477, 605
LweI	GCATC	1 cut(s)	477
MabI	ACCWGGT	1 cut(s)	328
MaeI	CTAG	4 cut(s)	203, 258, 278, 590
MalI	GATC	2 cut(s)	69, 276
MboI	GATC	2 cut(s)	67, 274
MboII	GAAGA	3 cut(s)	136, 231, 433
MflI	RGATCY	2 cut(s)	67, 274
MhlI	GDGCHC	3 cut(s)	416, 441, 603
MluCI	AATT	5 cut(s)	30, 111, 141, 393, 512
MnlI	CCTC	5 cut(s)	186, 222, 496, 555, 563
MseI	TTAA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	19, 64, 330
MvaI	CCWGG	3 cut(s)	19, 64, 330
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	2 cut(s)	67, 274
NlaIII	CATG	3 cut(s)	424, 437, 529
NlaIV	GGNNCC	4 cut(s)	16, 190, 191, 301
NspI	RCATGY	2 cut(s)	437, 529
NspV	TTCGAA	1 cut(s)	444
PciI	ACATGT	2 cut(s)	433, 525
PciSI	GCTCTTC	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	158, 467, 595
PpuMI	RGGWCCY	2 cut(s)	189, 299
PscI	ACATGT	2 cut(s)	433, 525
Psp124BI	GAGCTC	2 cut(s)	416, 603
Psp5II	RGGWCCY	2 cut(s)	189, 299
Psp6I	CCWGG	3 cut(s)	17, 62, 328
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	3 cut(s)	17, 62, 328
PspN4I	GGNNCC	4 cut(s)	16, 190, 191, 301
PspPI	GGNCC	5 cut(s)	85, 95, 189, 299, 536
PspPPI	RGGWCCY	2 cut(s)	189, 299
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	67, 274
PvuII	CAGCTG	1 cut(s)	596
SacI	GAGCTC	2 cut(s)	416, 603
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	3 cut(s)	157, 466, 594
Sau3AI	GATC	2 cut(s)	67, 274
Sau96I	GGNCC	5 cut(s)	85, 95, 189, 299, 536
ScrFI	CCNGG	3 cut(s)	19, 64, 330
SduI	GDGCHC	3 cut(s)	416, 441, 603
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	3 cut(s)	183, 194, 556
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	3 cut(s)	95, 189, 299
Sse9I	AATT	5 cut(s)	30, 111, 141, 393, 512
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	4 cut(s)	203, 258, 278, 590
SstI	GAGCTC	2 cut(s)	416, 603
StyD4I	CCNGG	3 cut(s)	17, 62, 328
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	184, 560
TaqI	TCGA	1 cut(s)	444
TasI	AATT	5 cut(s)	30, 111, 141, 393, 512
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TseI	GCWGC	3 cut(s)	156, 465, 593
TspDTI	ATGAA	2 cut(s)	353, 389
VpaK11BI	GGWCC	3 cut(s)	95, 189, 299
XagI	CCTNNNNNAGG	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	2 cut(s)	437, 529
XspI	CTAG	4 cut(s)	203, 258, 278, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.