Rroxscaffold_7G00195570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006422
Physical Location & Seq
Forward (+)
38037875 .. 38042708
4834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195570.1

Sequence Viewer

Length: 603 bp
ATGGATTCCGAGTCTCGAGAGAGAAAAGCAAGTGATTTTTCTGGAGATGATGTACCAGCTCCTCCCCCACCAATACCGGATCCAAGAGATCAATCGCCTCACTTGTCGCCTACTTCGTCGTCTCCGGCCTCGACCTCCTCTACGCTCTCCACCGCTTACGTCATCTCTCTCCTCCTCAATACATCGCCGTTTAAGGGATTCACTTTTTTTCATTCACTGATTGGAATTTTGGATTTTCCAATTGACAAGGACGCAGTTGCCGATTGGGTTCTGTCACTACAAGCTTACCCAAAAGACAACGACCAAGTCAACAATGCTTCCTCCGCTGCTACTCTTTTAAGGTGCCGGTGCTGCGTTTGGAGGGTCATCGGATTGTTTAAGGCGGACCACATCAAGAAAGGACGAGGTTATGTTGAATGGAAGAACATGGCACGTGGAAGGAGTAATCACGTCGGGAAATTTTTTCGCACTATTCACCGTCGGGTTTTTCGGTTTTGCTTGGCTTCCGGCCACTTCATTGTATTTTCTGACTTTATTACAGTTGAGAAAGTTGTTGGAAATGTTGAGATGATGTTGTATATGAAATTTGGTAACCGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.41

Weight (kDa)

9.27

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AciI CCGC 3 cut(s) 153, 324, 383
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 3 cut(s) 225, 458, 584
AcvI CACGTG 1 cut(s) 434
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 416
AjiI CACGTC 1 cut(s) 451
AluBI AGCT 3 cut(s) 59, 284, 600
AluI AGCT 3 cut(s) 59, 284, 600
Alw26I GTCTC 2 cut(s) 18, 126
AlwI GGATC 2 cut(s) 74, 87
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 126, 508
ApeKI GCWGC 2 cut(s) 326, 351
ApoI RAATTY 3 cut(s) 225, 458, 584
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 1 cut(s) 385
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 342
BbrPI CACGTG 1 cut(s) 434
BbvI GCAGC 2 cut(s) 313, 338
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 18, 126
BfaI CTAG 1 cut(s) 601
BisI GCNGC 2 cut(s) 327, 352
BlsI GCNGC 2 cut(s) 328, 353
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 81, 344
BpmI CTGGAG 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 434
BsaWI WCCGGW 2 cut(s) 76, 594
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 4 cut(s) 51, 127, 161, 164
BseXI GCAGC 2 cut(s) 313, 338
BshFI GGCC 2 cut(s) 128, 510
BshNI GGYRCC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 5 cut(s) 77, 125, 346, 507, 595
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 18, 126
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 128, 510
BsoBI CYCGRG 1 cut(s) 15
Bsp143I GATC 2 cut(s) 79, 88
BspACI CCGC 3 cut(s) 153, 324, 383
BspANI GGCC 2 cut(s) 128, 510
BspLI GGNNCC 2 cut(s) 81, 344
BspPI GGATC 2 cut(s) 74, 87
BspT107I GGYRCC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 345
BssMI GATC 2 cut(s) 79, 88
Bst4CI ACNGT 2 cut(s) 479, 541
BstBAI YACGTR 1 cut(s) 434
BstEII GGTNACC 1 cut(s) 590
BstKTI GATC 2 cut(s) 82, 91
BstMAI GTCTC 2 cut(s) 18, 126
BstMBI GATC 2 cut(s) 79, 88
BstMWI GCNNNNNNNGC 2 cut(s) 323, 351
BstPI GGTNACC 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 313, 338
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 2 cut(s) 128, 510
BtgZI GCGATG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 53
CviAII CATG 1 cut(s) 427
CviJI RGCY 6 cut(s) 59, 128, 284, 503, 510, 600
CviKI_1 RGCY 6 cut(s) 59, 128, 284, 503, 510, 600
CviQI GTAC 1 cut(s) 53
DpnI GATC 2 cut(s) 81, 90
DpnII GATC 2 cut(s) 79, 88
EaeI YGGCCR 1 cut(s) 508
EciI GGCGGA 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 15
Eco91I GGTNACC 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 1 cut(s) 430
FaiI YATR 4 cut(s) 411, 428, 579, 581
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 327, 352
Fsp4HI GCNGC 2 cut(s) 327, 352
FspBI CTAG 1 cut(s) 601
GluI GCNGC 2 cut(s) 327, 352
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 128, 510
HapII CCGG 5 cut(s) 77, 125, 346, 507, 595
HgaI GACGC 1 cut(s) 260
Hin1II CATG 1 cut(s) 430
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 3 cut(s) 5, 11, 198
HpaII CCGG 5 cut(s) 77, 125, 346, 507, 595
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 10, 371, 529
Hpy188III TCNNGA 5 cut(s) 15, 17, 42, 394, 454
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 121, 455, 483
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 2 cut(s) 479, 541
HpyCH4IV ACGT 3 cut(s) 159, 433, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 351
HpySE526I ACGT 3 cut(s) 159, 433, 450
Hsp92II CATG 1 cut(s) 430
Kzo9I GATC 2 cut(s) 79, 88
LmnI GCTCC 2 cut(s) 64, 597
LpnPI CCDG 6 cut(s) 27, 69, 90, 138, 359, 520
Lsp1109I GCAGC 2 cut(s) 313, 338
MaeI CTAG 1 cut(s) 601
MaeII ACGT 3 cut(s) 159, 433, 450
MaeIII GTNAC 2 cut(s) 273, 590
MalI GATC 2 cut(s) 81, 90
MboI GATC 2 cut(s) 79, 88
MboII GAAGA 1 cut(s) 433
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 79
MluCI AATT 4 cut(s) 225, 240, 458, 584
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 535
MseI TTAA 3 cut(s) 192, 338, 378
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 5 cut(s) 77, 125, 346, 507, 595
MunI CAATTG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 323, 351
NdeII GATC 2 cut(s) 79, 88
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 81, 344
NmuCI GTSAC 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 258
PfeI GAWTC 2 cut(s) 5, 198
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 328, 353
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 434
PspCI CACGTG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 81, 344
PspPI GGNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 3 cut(s) 192, 338, 378
SatI GCNGC 2 cut(s) 327, 352
Sau3AI GATC 2 cut(s) 79, 88
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 20
SetI ASST 9 cut(s) 61, 137, 162, 286, 344, 409, 436, 453, 602
Sfr274I CTCGAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 4 cut(s) 225, 240, 458, 584
SsiI CCGC 3 cut(s) 153, 324, 383
SspMI CTAG 1 cut(s) 601
TaaI ACNGT 2 cut(s) 479, 541
TaiI ACGT 3 cut(s) 162, 436, 453
TaqI TCGA 2 cut(s) 16, 131
TasI AATT 4 cut(s) 225, 240, 458, 584
TfiI GAWTC 2 cut(s) 5, 198
Tru1I TTAA 3 cut(s) 192, 338, 378
Tru9I TTAA 3 cut(s) 192, 338, 378
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 2 cut(s) 326, 351
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 200, 505, 596
TspRI CASTG 1 cut(s) 222
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 3 cut(s) 225, 458, 584
XhoI CTCGAG 1 cut(s) 15
XspI CTAG 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.