Rh7AG017800

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
1191125 .. 1192981
1857 bp
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UTR
Exon/CDS
Intron
Rh7AG017800.1

Sequence Viewer

Length: 285 bp
ATGGATTTCGAGTCTCAAGAGAGAAAAGCAAGTGACTTTTCTCAAGATGATGTACCAGCTCCTCCCCTACCAATACCAGATCCAAGAGATCAACTGCCTCACTGTCGCCTACTTCGTCAATCCAAAAGTGATATATTACAAGCTGAAGTTAGTTCAATACCCATAGTGGATGACAGTGATTCATTGCTGGATGTTTATTCACGAAGGTCTTTACAAGAACTTGTTCCACTTCCTTATTTTCCTCCTCGGTGGTTCTCAAGCTGCTTCTCTGAATTTGGTAGCTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.74

Weight (kDa)

4.42

Isoelectric Point (pI)

85.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 156
AluBI AGCT 4 cut(s) 59, 143, 261, 282
AluI AGCT 4 cut(s) 59, 143, 261, 282
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 18
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 27, 241
BsaJI CCNNGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 175, 196
BseMI GCAATG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 51, 234
BseXI GCAGC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 79, 88
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 79, 88
Bst4CI ACNGT 2 cut(s) 104, 176
BstF5I GGATG 2 cut(s) 175, 196
BstKTI GATC 2 cut(s) 82, 91
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 79, 88
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtsCI GGATG 2 cut(s) 175, 196
BtsIMutI CAGTG 2 cut(s) 100, 181
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 4 cut(s) 59, 143, 261, 282
CviKI_1 RGCY 4 cut(s) 59, 143, 261, 282
CviQI GTAC 1 cut(s) 53
DpnI GATC 2 cut(s) 81, 90
DpnII GATC 2 cut(s) 79, 88
Eco57I CTGAAG 1 cut(s) 165
FaiI YATR 2 cut(s) 134, 164
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 182, 203
Fsp4HI GCNGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 262
HinfI GANTC 2 cut(s) 11, 179
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 17, 44, 201
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 104, 176
Kzo9I GATC 2 cut(s) 79, 88
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 69, 90, 173
Lsp1109I GCAGC 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 81, 90
MboI GATC 2 cut(s) 79, 88
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 72, 108, 252, 255
MroXI GAANNNNTTC 1 cut(s) 222
NdeII GATC 2 cut(s) 79, 88
NmuCI GTSAC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 79, 88
SchI GAGTC 1 cut(s) 20
SetI ASST 5 cut(s) 61, 145, 209, 263, 284
SmlI CTYRAG 3 cut(s) 15, 42, 256
SmoI CTYRAG 3 cut(s) 15, 42, 256
Sse9I AATT 1 cut(s) 272
TaaI ACNGT 2 cut(s) 104, 176
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 272
TfiI GAWTC 1 cut(s) 179
TscAI CASTG 2 cut(s) 107, 181
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 2 cut(s) 107, 181
XapI RAATTY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.