Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006422

Physical Location & Seq

Genomic Coordinates Reverse (-)

37249891 .. 37252189

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTCCGAGTCTCGAGAGAGAAAAGCAAGTGACTTTTCTAGAGATGATGTACCAGCTCCTCCCCCACCAATACTAGAACCAAGAGAACAACCGCCTCGCTGTCGCCTACTTTGTCGTCTCCGGCCTCGACCTCCTCTGCGCTCTCCAGCGCTTACGGATCCCATACCTTCAGAATCGCTTAAAAGGACCAAAGCGGCGTCCTTTCTTAGTTGGGCTTCCTCCGTTGCTACTCTTTTAAGGTGCCAGTGCTGCATTTGGAGCCAAATTGTTGTCACTAATGGACAGATGCAAGGCTGTGGGCTTGACAATTCATTTGACGTGGCTAGTAAAAGTACTATTTCCCCTGTATATATAGCTCAAGAAAATAGCTTTGATGAGCAGGATATTGTGTATGCACTAAATCAAAGAAACACTCTTAGACAGGTTTATTCAAATGGTGGGATGTTGTTGTGGTGGTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH SPRY

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

8.26

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006422)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325521 RchiOBHm_Chr1g0337951 RchiOBHm_Chr2g0166631 RchiOBHm_Chr3g0479841 RchiOBHm_Chr4g0392621 RchiOBHm_Chr4g0397291 RchiOBHm_Chr4g0400561 RchiOBHm_Chr4g0418031 RchiOBHm_Chr5g0048041 RchiOBHm_Chr5g0079221 RchiOBHm_Chr6g0251371 RchiOBHm_Chr6g0257241 RchiOBHm_Chr7g0222971 RchiOBHm_Chr7g0241581
rosa_laevigata	RLG00000034139
rosa_multiflora	Rmu_sc0001029.1_g000028 Rmu_sc0002286.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036370 Rroxscaffold_5G00354060 Rroxscaffold_7G00195570
rosa_samantha	Rh4AG016700 Rh4CG000200 Rh5AG299800 Rh5DG316500 Rh6AG127600 Rh7AG017800
rosa_wichuraiana	Rw3G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AciI	CCGC	2 cut(s)	95, 197
AclWI	GGATC	2 cut(s)	155, 168
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	54, 337
AfeI	AGCGCT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	435
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	3 cut(s)	59, 359, 372
AluI	AGCT	3 cut(s)	59, 359, 372
Alw26I	GTCTC	2 cut(s)	18, 125
AlwI	GGATC	2 cut(s)	155, 168
Ama87I	CYCGRG	1 cut(s)	15
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	2 cut(s)	144, 154
AspS9I	GGNCC	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	18, 125
BfaI	CTAG	3 cut(s)	42, 77, 327
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	2 cut(s)	198, 253
BlsI	GCNGC	2 cut(s)	199, 254
BmcAI	AGTACT	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	3 cut(s)	162, 245, 263
BmsI	GCATC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	51, 126
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	18, 125
BsmBI	CGTCTC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	95, 197
BspANI	GGCC	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	162, 245, 263
BspPI	GGATC	2 cut(s)	155, 168
BspT107I	GGYRCC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	209, 419
BstF5I	GGATG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	144, 154
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	18, 125
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 261
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	254
CfoI	GCGC	2 cut(s)	144, 154
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	53, 336
CviJI	RGCY	9 cut(s)	59, 127, 218, 264, 297, 304, 326, 359, 372
CviKI_1	RGCY	9 cut(s)	59, 127, 218, 264, 297, 304, 326, 359, 372
CviQI	GTAC	2 cut(s)	53, 336
DdeI	CTNAG	2 cut(s)	209, 419
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	189
Eco47III	AGCGCT	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	125
FaiI	YATR	6 cut(s)	167, 352, 354, 356, 396, 466
Fnu4HI	GCNGC	2 cut(s)	198, 253
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	198, 253
FspBI	CTAG	3 cut(s)	42, 77, 327
GlaI	GCGC	2 cut(s)	143, 153
GluI	GCNGC	2 cut(s)	198, 253
GsuI	CTGGAG	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	144, 154
Hin1I	GRCGYC	1 cut(s)	200
Hin6I	GCGC	2 cut(s)	142, 152
HinP1I	GCGC	2 cut(s)	142, 152
HinfI	GANTC	3 cut(s)	5, 11, 176
HpaII	CCGG	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	10, 175
Hpy188III	TCNNGA	4 cut(s)	15, 17, 42, 362
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	255, 292, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 261
HpyF3I	CTNAG	2 cut(s)	209, 419
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	200
HspAI	GCGC	2 cut(s)	142, 152
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	64, 261
LpnPI	CCDG	7 cut(s)	69, 137, 162, 260, 360, 368, 410
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	3 cut(s)	42, 77, 327
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	32, 274
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	2 cut(s)	267, 310
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	72, 108, 138, 144, 147, 232
MseI	TTAA	2 cut(s)	183, 239
MspI	CCGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	252, 261
NdeII	GATC	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	162, 245, 263
NmuCI	GTSAC	2 cut(s)	32, 274
PaeR7I	CTCGAG	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	5, 176
PkrI	GCNGC	2 cut(s)	199, 254
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	162, 245, 263
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	2 cut(s)	54, 337
RsaNI	GTAC	2 cut(s)	53, 336
SaqAI	TTAA	2 cut(s)	183, 239
SatI	GCNGC	2 cut(s)	198, 253
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	189
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	1 cut(s)	20
SetI	ASST	8 cut(s)	61, 136, 172, 245, 324, 361, 374, 429
SfaNI	GCATC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	2 cut(s)	15, 360
SmoI	CTYRAG	2 cut(s)	15, 360
Sse9I	AATT	2 cut(s)	267, 310
SsiI	CCGC	2 cut(s)	95, 197
SspMI	CTAG	3 cut(s)	42, 77, 327
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	16, 130
TasI	AATT	2 cut(s)	267, 310
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	5, 176
Tru1I	TTAA	2 cut(s)	183, 239
Tru9I	TTAA	2 cut(s)	183, 239
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	32, 274
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	2 cut(s)	32, 274
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	2 cut(s)	173, 214
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	15
XspI	CTAG	3 cut(s)	42, 77, 327
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.