RchiOBHm_Chr1g0341591

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
33370312 .. 33370711
400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56827

Sequence Viewer

Length: 243 bp
ATGCTTGGGTTTGGGCCCACTGTTTGGGTCCGGCCCAAGTTGTTTTATGGTTTTAACACTTTTATTTGGGTTTTGTTTTACGTTTTAGTTGTTGGGTCGGGTCGGGTGCACTACAATTTTGGCATTGACAATCTTCTATTAAGTGGTCTAGAGGTTGTTCTTGTTCTGGAGTTAGGTCAGCAGCGATGGCGAAATTGTCTGGCGGTGACATACTGGCATAGACAAACATCCTTGGCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.32

Weight (kDa)

9.51

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 24
AciI CCGC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 107
AoxI GGCC 3 cut(s) 14, 32, 234
ApaI GGGCCC 1 cut(s) 18
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 181
AspS9I GGNCC 4 cut(s) 14, 15, 28, 33
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 2 cut(s) 18, 111
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 180
BfaI CTAG 2 cut(s) 149, 241
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 4 cut(s) 14, 15, 28, 33
BmiI GGNNCC 2 cut(s) 16, 29
BpmI CTGGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 218
BseSI GKGCMC 2 cut(s) 18, 111
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 3 cut(s) 16, 34, 236
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 24
BsnI GGCC 3 cut(s) 16, 34, 236
Bsp120I GGGCCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 18, 111
BspACI CCGC 1 cut(s) 203
BspANI GGCC 3 cut(s) 16, 34, 236
BspLI GGNNCC 2 cut(s) 16, 29
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 22
BstF5I GGATG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstSLI GKGCMC 2 cut(s) 18, 111
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 3 cut(s) 16, 34, 236
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 18
Cfr13I GGNCC 4 cut(s) 14, 15, 28, 33
CviJI RGCY 3 cut(s) 16, 34, 236
CviKI_1 RGCY 3 cut(s) 16, 34, 236
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 3 cut(s) 48, 211, 219
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 2 cut(s) 149, 241
GluI GCNGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 16, 34, 236
HapII CCGG 1 cut(s) 31
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 149, 167
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 81
LpnPI CCDG 4 cut(s) 44, 152, 185, 199
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 2 cut(s) 149, 241
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 18, 111
MluCI AATT 2 cut(s) 115, 193
MnlI CCTC 1 cut(s) 145
MseI TTAA 2 cut(s) 54, 140
MspI CCGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 187
NlaIV GGNNCC 2 cut(s) 16, 29
NmuCI GTSAC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 16, 29
PspOMI GGGCCC 1 cut(s) 14
PspPI GGNCC 4 cut(s) 14, 15, 28, 33
SaqAI TTAA 2 cut(s) 54, 140
SatI GCNGC 1 cut(s) 182
Sau96I GGNCC 4 cut(s) 14, 15, 28, 33
SduI GDGCHC 2 cut(s) 18, 111
SetI ASST 3 cut(s) 84, 156, 178
SinI GGWCC 1 cut(s) 28
Sse9I AATT 2 cut(s) 115, 193
SsiI CCGC 1 cut(s) 203
SspMI CTAG 2 cut(s) 149, 241
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 84
TasI AATT 2 cut(s) 115, 193
Tru1I TTAA 2 cut(s) 54, 140
Tru9I TTAA 2 cut(s) 54, 140
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 24
VneI GTGCAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 28
XbaI TCTAGA 1 cut(s) 148
XspI CTAG 2 cut(s) 149, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.