RchiOBHm_Chr6g0299511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010617
Physical Location & Seq
Reverse (-)
60556335 .. 60557736
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26894

Sequence Viewer

Length: 435 bp
ATGTTGTTTAACTTTATTGCGCATTATGCGAGCAATAAGTCCCTACCAATTTGGGTTAGGGCTTATGGTTTAGGGTTTTGGTTTGTGGTACTAGCAGGTGTTCTAGTTGTGTTAGGTATTAGTTGTTGGGTCGGGTGCACTGCAAGTTGTGGCAGAGACAATATTCTCTTTGGCCTTCTAGAGGGTCGTTCCTATTCTGGAGTTGGGTCAGCAGTGATGGCGAAAAAGTCTAGCCATGGCATAGACAATCATCCTTGGCCTTCTAGTGGGTCGTTCCTTTCTGGTTTCGAGTCGGAGGCGATGGCGATTTGGAACATCAGTGGATTGACGGTGTTGACATTAGGGTGGTGGACTTTGGGTGGCGAGTTAGTGTTGACAAAGTTTAGTATTAAGGATCCACTGCTCCTGCGCATGTTGTCTTTGCCATATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.64

Weight (kDa)

8.52

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc16I TGCGCA 2 cut(s) 21, 410
Acc36I ACCTGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 389, 402
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 181, 266
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 136
AlwI GGATC 2 cut(s) 389, 402
AoxI GGCC 2 cut(s) 172, 257
ApaLI GTGCAC 1 cut(s) 136
AspLEI GCGC 2 cut(s) 22, 411
BaeGI GKGCMC 1 cut(s) 140
BamHI GGATCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 2 cut(s) 211, 295
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 5 cut(s) 92, 104, 179, 231, 264
BfuAI ACCTGC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 235, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 266
BseDI CCNNGG 2 cut(s) 235, 254
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 181, 266
BseSI GKGCMC 1 cut(s) 140
BshFI GGCC 2 cut(s) 174, 259
BsiHKAI GWGCWC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 181, 266
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 2 cut(s) 174, 259
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 394
Bsp19I CCATGG 1 cut(s) 235
BspANI GGCC 2 cut(s) 174, 259
BspLI GGNNCC 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 389, 402
BssECI CCNNGG 2 cut(s) 235, 254
BssMI GATC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 235, 254
Bst4CI ACNGT 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 22, 411
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 26, 218
BstNSI RCATGY 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 2 cut(s) 174, 259
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 3 cut(s) 138, 219, 398
BtsIMutI CAGTG 4 cut(s) 138, 219, 325, 398
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 2 cut(s) 22, 411
Csp6I GTAC 1 cut(s) 89
CviAII CATG 2 cut(s) 236, 412
CviJI RGCY 4 cut(s) 62, 174, 234, 259
CviKI_1 RGCY 4 cut(s) 62, 174, 234, 259
CviQI GTAC 1 cut(s) 89
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 235, 254
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 235, 254
ErhI CCWWGG 2 cut(s) 235, 254
FaeI CATG 2 cut(s) 239, 415
FaiI YATR 7 cut(s) 27, 66, 237, 242, 413, 427, 429
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 235, 411
FokI GGATG 1 cut(s) 237
FspBI CTAG 5 cut(s) 92, 104, 179, 231, 264
FspI TGCGCA 2 cut(s) 21, 410
GlaI GCGC 2 cut(s) 21, 410
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 174, 259
HhaI GCGC 2 cut(s) 22, 411
Hin1II CATG 2 cut(s) 239, 415
Hin6I GCGC 2 cut(s) 20, 409
HinP1I GCGC 2 cut(s) 20, 409
HincII GTYRAC 2 cut(s) 336, 375
HindII GTYRAC 2 cut(s) 336, 375
HinfI GANTC 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 138, 336, 351, 375
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 179, 198
Hpy8I GTNNAC 4 cut(s) 138, 336, 351, 375
HpyAV CCTTC 2 cut(s) 185, 270
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 138, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 218
Hsp92II CATG 2 cut(s) 239, 415
HspAI GCGC 2 cut(s) 20, 409
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 4 cut(s) 81, 183, 267, 419
MaeI CTAG 5 cut(s) 92, 104, 179, 231, 264
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 175, 289
MseI TTAA 2 cut(s) 9, 390
MslI CAYNNNNRTG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 26, 218
NcoI CCATGG 1 cut(s) 235
NdeII GATC 1 cut(s) 394
NlaIII CATG 2 cut(s) 239, 415
NlaIV GGNNCC 1 cut(s) 396
NsbI TGCGCA 2 cut(s) 21, 410
NspI RCATGY 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 396
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 343
SaqAI TTAA 2 cut(s) 9, 390
Sau3AI GATC 1 cut(s) 394
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 100, 118
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 1 cut(s) 48
SspI AATATT 1 cut(s) 163
SspMI CTAG 5 cut(s) 92, 104, 179, 231, 264
StyI CCWWGG 2 cut(s) 235, 254
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 48
Tru1I TTAA 2 cut(s) 9, 390
Tru9I TTAA 2 cut(s) 9, 390
TscAI CASTG 4 cut(s) 145, 219, 325, 405
TspRI CASTG 4 cut(s) 145, 219, 325, 405
VneI GTGCAC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 415
XspI CTAG 5 cut(s) 92, 104, 179, 231, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.