Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010617

Physical Location & Seq

Genomic Coordinates Forward (+)

1051519 .. 1064211

Gene Structure 12693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGAGGAGTAGCCGGCCCCGACACCATTGGCGATGGTCGGCTGCGGCTCTGCCCCTAACTCCGGCGGCGCTTTCGGCCACCTCCGGGGTCAAAAATAAGACGCAGCGGGAATTAGAGACTACGGTTTTGACGTCGTCCGAGACCTGCAAGGAGATGAGCTTCGGAGCCCGGACCCGATTCCGGTGTGGAGCTTCGGAGCTTTCCGGACATCCGACAAACAAAACCTGCGAAGCCCGGACCCGATTCGGGCGTGGAGCTTCGGAGCTTCTGGACATCCGACGAACAAAACCGGCGAAGCCCGGAGGGTTGGGATCGTGGAGTTGGATGGGGTCATCCTCCGGTGGTCCGACGGTGGGACGAGTGGTGGCGGTAGAGGCCGACATCGACGGTGGAGTGGTGGGCGTGGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.67

Weight (kDa)

10.59

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341
rosa_laevigata	RLG00000027966
rosa_multiflora	Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056
rosa_roxburghii	Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440
rosa_samantha	Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	155, 236
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	4 cut(s)	47, 68, 109, 371
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	5 cut(s)	64, 87, 183, 249, 356
AluBI	AGCT	5 cut(s)	162, 194, 202, 260, 268
AluI	AGCT	5 cut(s)	162, 194, 202, 260, 268
Alw26I	GTCTC	2 cut(s)	113, 137
AlwI	GGATC	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	3 cut(s)	17, 78, 378
ApeKI	GCWGC	2 cut(s)	44, 106
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	4 cut(s)	18, 174, 240, 347
AsuC2I	CCSGG	4 cut(s)	88, 172, 238, 303
AvaII	GGWCC	3 cut(s)	174, 240, 347
BanII	GRGCYC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	31, 118
BccI	CCATC	2 cut(s)	30, 322
BcnI	CCSGG	4 cut(s)	88, 172, 238, 303
BcoDI	GTCTC	2 cut(s)	113, 137
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	2 cut(s)	155, 236
BisI	GCNGC	4 cut(s)	45, 48, 69, 107
BlsI	GCNGC	4 cut(s)	46, 49, 70, 108
Bme1390I	CCNGG	4 cut(s)	88, 172, 238, 303
Bme18I	GGWCC	3 cut(s)	174, 240, 347
BmgT120I	GGNCC	4 cut(s)	18, 174, 240, 347
BmiI	GGNNCC	4 cut(s)	20, 169, 176, 242
BmrFI	CCNGG	4 cut(s)	88, 172, 238, 303
BpuMI	CCSGG	4 cut(s)	88, 172, 238, 303
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	3 cut(s)	183, 206, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 87, 183, 249, 356
Bse118I	RCCGGY	2 cut(s)	15, 292
BseAI	TCCGGA	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	211, 276, 333, 335
BseLI	CCNNNNNNNGG	5 cut(s)	64, 87, 183, 249, 356
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	31, 118
BshFI	GGCC	3 cut(s)	19, 80, 380
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	5 cut(s)	64, 87, 183, 249, 356
BsmAI	GTCTC	2 cut(s)	113, 137
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	19, 80, 380
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	314
BspACI	CCGC	4 cut(s)	47, 68, 109, 371
BspANI	GGCC	3 cut(s)	19, 80, 380
BspEI	TCCGGA	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	20, 169, 176, 242
BspMI	ACCTGC	2 cut(s)	155, 236
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	2 cut(s)	15, 292
BssAI	RCCGGY	2 cut(s)	15, 292
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	314
BssNI	GRCGYC	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	127, 355, 392
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	4 cut(s)	211, 276, 333, 335
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	317
BstMAI	GTCTC	2 cut(s)	113, 137
BstMBI	GATC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 377
BstSCI	CCNGG	4 cut(s)	86, 170, 236, 301
BstV1I	GCAGC	2 cut(s)	31, 118
BsuRI	GGCC	3 cut(s)	19, 80, 380
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	211, 276, 333, 335
BveI	ACCTGC	2 cut(s)	155, 236
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	15, 292
Cfr13I	GGNCC	4 cut(s)	18, 174, 240, 347
CseI	GACGC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	3 cut(s)	174, 240, 347
EcoT38I	GRGCYC	1 cut(s)	172
FaqI	GGGAC	1 cut(s)	372
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	45, 48, 69, 107
FokI	GGATG	4 cut(s)	198, 263, 322, 340
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	45, 48, 69, 107
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	45, 48, 69, 107
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	19, 80, 380
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	2 cut(s)	180, 246
Hpy188I	TCNGA	7 cut(s)	142, 167, 199, 216, 265, 281, 351
Hpy188III	TCNNGA	2 cut(s)	207, 272
Hpy99I	CGWCG	4 cut(s)	139, 285, 355, 392
HpyCH4III	ACNGT	3 cut(s)	127, 355, 392
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 377
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	134
HspAI	GCGC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	15
KroNI	GCCGGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	314
LmnI	GCTCC	5 cut(s)	167, 191, 199, 257, 265
Lsp1109I	GCAGC	2 cut(s)	31, 118
MaeII	ACGT	1 cut(s)	134
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	113
MmeI	TCCRAC	4 cut(s)	239, 304, 305, 374
MnlI	CCTC	4 cut(s)	94, 299, 349, 370
MroI	TCCGGA	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	109
MspR9I	CCNGG	4 cut(s)	88, 172, 238, 303
MwoI	GCNNNNNNNGC	2 cut(s)	77, 377
NaeI	GCCGGC	1 cut(s)	17
NciI	CCSGG	4 cut(s)	88, 172, 238, 303
NdeII	GATC	1 cut(s)	314
NgoMIV	GCCGGC	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	20, 169, 176, 242
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	180, 246
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	46, 49, 70, 108
PspN4I	GGNNCC	4 cut(s)	20, 169, 176, 242
PspPI	GGNCC	4 cut(s)	18, 174, 240, 347
PsyI	GACNNNGTC	1 cut(s)	136
SatI	GCNGC	4 cut(s)	45, 48, 69, 107
Sau3AI	GATC	1 cut(s)	314
Sau96I	GGNCC	4 cut(s)	18, 174, 240, 347
ScrFI	CCNGG	4 cut(s)	88, 172, 238, 303
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	9 cut(s)	86, 137, 149, 164, 196, 204, 230, 262, 270
SinI	GGWCC	3 cut(s)	174, 240, 347
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	4 cut(s)	47, 68, 109, 371
StyD4I	CCNGG	4 cut(s)	86, 170, 236, 301
TaaI	ACNGT	3 cut(s)	127, 355, 392
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	113
TauI	GCSGC	2 cut(s)	50, 71
TfiI	GAWTC	2 cut(s)	180, 246
TseI	GCWGC	2 cut(s)	44, 106
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	174, 240, 347
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.