No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341 |
| rosa_laevigata | RLG00000027966 |
| rosa_multiflora | Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056 |
| rosa_roxburghii | Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440 |
| rosa_samantha | Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 120 |
| AciI | CCGC | 2 cut(s) | 28, 202 |
| AclWI | GGATC | 6 cut(s) | 30, 75, 94, 107, 124, 212 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 63, 109, 272 |
| AluBI | AGCT | 1 cut(s) | 278 |
| AluI | AGCT | 1 cut(s) | 278 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AlwI | GGATC | 6 cut(s) | 30, 75, 94, 107, 124, 212 |
| AoxI | GGCC | 3 cut(s) | 253, 263, 291 |
| AspS9I | GGNCC | 2 cut(s) | 253, 291 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 205, 239 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 1 cut(s) | 146 |
| BfuAI | ACCTGC | 1 cut(s) | 120 |
| BisI | GCNGC | 1 cut(s) | 29 |
| BlsI | GCNGC | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 2 cut(s) | 253, 291 |
| BmiI | GGNNCC | 1 cut(s) | 101 |
| BsaI | GGTCTC | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 294 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 63, 109, 272 |
| Bse1I | ACTGG | 1 cut(s) | 185 |
| BseDI | CCNNGG | 1 cut(s) | 294 |
| BseGI | GGATG | 1 cut(s) | 37 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 63, 109, 272 |
| BseNI | ACTGG | 1 cut(s) | 185 |
| BshFI | GGCC | 3 cut(s) | 255, 265, 293 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 63, 109, 272 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsnI | GGCC | 3 cut(s) | 255, 265, 293 |
| Bso31I | GGTCTC | 1 cut(s) | 98 |
| Bsp143I | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| BspACI | CCGC | 2 cut(s) | 28, 202 |
| BspANI | GGCC | 3 cut(s) | 255, 265, 293 |
| BspLI | GGNNCC | 1 cut(s) | 101 |
| BspMI | ACCTGC | 1 cut(s) | 120 |
| BspPI | GGATC | 6 cut(s) | 30, 75, 94, 107, 124, 212 |
| BspTNI | GGTCTC | 1 cut(s) | 98 |
| BsrI | ACTGG | 1 cut(s) | 185 |
| BssECI | CCNNGG | 1 cut(s) | 294 |
| BssMI | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstDEI | CTNAG | 1 cut(s) | 125 |
| BstF5I | GGATG | 1 cut(s) | 37 |
| BstKTI | GATC | 6 cut(s) | 25, 83, 102, 119, 124, 207 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 208, 275, 284 |
| BstX2I | RGATCY | 4 cut(s) | 80, 99, 116, 204 |
| BstYI | RGATCY | 4 cut(s) | 80, 99, 116, 204 |
| BsuRI | GGCC | 3 cut(s) | 255, 265, 293 |
| BtsCI | GGATG | 1 cut(s) | 37 |
| BtsI | GCAGTG | 1 cut(s) | 246 |
| BtsIMutI | CAGTG | 2 cut(s) | 54, 246 |
| BveI | ACCTGC | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 2 cut(s) | 253, 291 |
| CviAII | CATG | 2 cut(s) | 175, 194 |
| CviJI | RGCY | 5 cut(s) | 255, 265, 278, 293, 299 |
| CviKI_1 | RGCY | 5 cut(s) | 255, 265, 278, 293, 299 |
| DdeI | CTNAG | 1 cut(s) | 125 |
| DpnI | GATC | 6 cut(s) | 24, 82, 101, 118, 123, 206 |
| DpnII | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| EciI | GGCGGA | 1 cut(s) | 217 |
| Eco31I | GGTCTC | 1 cut(s) | 98 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| FaeI | CATG | 2 cut(s) | 178, 197 |
| FaiI | YATR | 3 cut(s) | 176, 186, 195 |
| FatI | CATG | 2 cut(s) | 174, 193 |
| Fnu4HI | GCNGC | 1 cut(s) | 29 |
| FokI | GGATG | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 1 cut(s) | 29 |
| FspBI | CTAG | 1 cut(s) | 146 |
| GluI | GCNGC | 1 cut(s) | 29 |
| HaeIII | GGCC | 3 cut(s) | 255, 265, 293 |
| Hin1II | CATG | 2 cut(s) | 178, 197 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 85, 121 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 146 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 208, 275, 284 |
| HpyF3I | CTNAG | 1 cut(s) | 125 |
| Hsp92II | CATG | 2 cut(s) | 178, 197 |
| Kzo9I | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| LmnI | GCTCC | 1 cut(s) | 275 |
| LpnPI | CCDG | 9 cut(s) | 82, 93, 115, 166, 193, 197, 255, 279, 297 |
| MaeI | CTAG | 1 cut(s) | 146 |
| MalI | GATC | 6 cut(s) | 24, 82, 101, 118, 123, 206 |
| MboI | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| MflI | RGATCY | 4 cut(s) | 80, 99, 116, 204 |
| MnlI | CCTC | 2 cut(s) | 51, 106 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 208, 275, 284 |
| NdeII | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| NlaIII | CATG | 2 cut(s) | 178, 197 |
| NlaIV | GGNNCC | 1 cut(s) | 101 |
| NmeAIII | GCCGAG | 2 cut(s) | 241, 275 |
| PkrI | GCNGC | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 1 cut(s) | 101 |
| PspPI | GGNCC | 2 cut(s) | 253, 291 |
| PsuI | RGATCY | 4 cut(s) | 80, 99, 116, 204 |
| SatI | GCNGC | 1 cut(s) | 29 |
| Sau3AI | GATC | 6 cut(s) | 22, 80, 99, 116, 121, 204 |
| Sau96I | GGNCC | 2 cut(s) | 253, 291 |
| SetI | ASST | 3 cut(s) | 134, 222, 280 |
| SsiI | CCGC | 2 cut(s) | 28, 202 |
| SspMI | CTAG | 1 cut(s) | 146 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TscAI | CASTG | 2 cut(s) | 54, 246 |
| TspDTI | ATGAA | 2 cut(s) | 26, 191 |
| TspRI | CASTG | 2 cut(s) | 54, 246 |
| XbaI | TCTAGA | 1 cut(s) | 145 |
| XspI | CTAG | 1 cut(s) | 146 |