Rh5AG323700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
48384412 .. 48386056
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG323700.1

Sequence Viewer

Length: 285 bp
ATGACAGATGGGTATGAGGGCAGCGGCTTGGGAAAATCGGGCTGGGTGTCCATTGTCGATGTCAACTCGCAGGTGGAGGTCCGATGCTGGCAAAGGCGATTTGATGCAGGTGGTCCGACGCAGGTGGTGGTCCGCTGCAGGCTGTGGCCTGAGGCAAGAGGACGCAAACAGAACCTCCTCCTCGCCTATGTCGGGTACGCCGATGGAGGTGCTGCGGGCGTGTGGAACGATGGTTGGGACGAAAGGGCAGAGCAGGTTTTGATAATGGGCTGGAGCAGTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

5.27

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 61, 98, 112
Acc36I ACCTGC 4 cut(s) 61, 98, 112, 244
AciI CCGC 3 cut(s) 24, 133, 215
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 192
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 21, 135, 212
AspS9I GGNCC 3 cut(s) 79, 113, 130
AvaII GGWCC 3 cut(s) 79, 113, 130
AxyI CCTNAGG 1 cut(s) 150
BbvI GCAGC 3 cut(s) 33, 122, 199
BccI CCATC 3 cut(s) 2, 197, 224
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BfmI CTRYAG 1 cut(s) 136
BfuAI ACCTGC 4 cut(s) 61, 98, 112, 244
BisI GCNGC 4 cut(s) 22, 25, 136, 213
BlsI GCNGC 4 cut(s) 23, 26, 137, 214
Bme18I GGWCC 3 cut(s) 79, 113, 130
BmgT120I GGNCC 3 cut(s) 79, 113, 130
BmsI GCATC 2 cut(s) 74, 94
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 167, 170
BseXI GCAGC 3 cut(s) 33, 122, 199
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 148
BspACI CCGC 3 cut(s) 24, 133, 215
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 140
BspMI ACCTGC 4 cut(s) 61, 98, 112, 244
BstC8I GCNNGC 3 cut(s) 89, 140, 217
BstDEI CTNAG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 33, 122, 199
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 148
BveI ACCTGC 4 cut(s) 61, 98, 112, 244
Cac8I GCNNGC 3 cut(s) 89, 140, 217
Cfr13I GGNCC 3 cut(s) 79, 113, 130
CseI GACGC 2 cut(s) 127, 171
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 5 cut(s) 27, 42, 142, 148, 270
CviKI_1 RGCY 5 cut(s) 27, 42, 142, 148, 270
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 79, 113, 130
Eco81I CCTNAGG 1 cut(s) 150
FaiI YATR 2 cut(s) 15, 189
FaqI GGGAC 1 cut(s) 251
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 22, 25, 136, 213
Fsp4HI GCNGC 4 cut(s) 22, 25, 136, 213
GluI GCNGC 4 cut(s) 22, 25, 136, 213
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 2 cut(s) 127, 171
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 83, 117
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 107, 138
HpyF3I CTNAG 1 cut(s) 150
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 9 cut(s) 28, 56, 73, 93, 107, 124, 162, 239, 256
Lsp1109I GCAGC 3 cut(s) 33, 122, 199
LweI GCATC 2 cut(s) 74, 94
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 8 cut(s) 10, 70, 145, 152, 185, 188, 191, 200
MspA1I CMGCKG 2 cut(s) 24, 135
PaqCI CACCTGC 3 cut(s) 61, 98, 112
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PkrI GCNGC 4 cut(s) 23, 26, 137, 214
PspFI CCCAGC 1 cut(s) 42
PspPI GGNCC 3 cut(s) 79, 113, 130
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SatI GCNGC 4 cut(s) 22, 25, 136, 213
Sau96I GGNCC 3 cut(s) 79, 113, 130
SetI ASST 7 cut(s) 75, 81, 112, 126, 177, 211, 258
SfaNI GCATC 2 cut(s) 74, 94
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 3 cut(s) 79, 113, 130
SsiI CCGC 3 cut(s) 24, 133, 215
TaqI TCGA 1 cut(s) 57
TauI GCSGC 1 cut(s) 27
TseI GCWGC 3 cut(s) 21, 135, 212
TspGWI ACGGA 1 cut(s) 270
VpaK11BI GGWCC 3 cut(s) 79, 113, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.