Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010617

Physical Location & Seq

Genomic Coordinates Forward (+)

17274889 .. 17276688

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTGGCGTGGCGTGGTTCGGATCCACGGCAGTTTCATCCTCCTTTAGTGGTGTCCAATCTGGGGTGGACGGTGGCGCGATCCGGGTTGGGTCTCTGGATCCACTCTGGGGAGGGATCTGATCTGAGCAGGTTTGGGCGAGTTCTGGATTGGATTTGCTGTGGTTGTGGTAGCATCAACTGGTATGGTCGTCATGGGTGGCGGATCTGGCAGGGCAAGGTAGTCTGTGGTCCGTCTGCAGTGGGGGGTTTGGGCCAAGCTCGGCCTGCTGGTGGAGCTTCTCCTGCTTGGGCCTCAGCCTGCGGTGTTTGGGCAGGGACTTTGTTGCTGGGGCTAGATGGAGTTTGGGCCAGGATCTGTGCTTGGGCTCAGGGGCTTGCACATGAGACCTTGCAACATGAACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.53

Weight (kDa)

8.32

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341
rosa_laevigata	RLG00000027966
rosa_multiflora	Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056
rosa_roxburghii	Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440
rosa_samantha	Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccII	CGCG	1 cut(s)	79
AciI	CCGC	2 cut(s)	202, 303
AclWI	GGATC	8 cut(s)	17, 30, 75, 94, 107, 124, 212, 362
AfiI	CCNNNNNNNGG	3 cut(s)	63, 109, 272
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	260, 278
AluI	AGCT	2 cut(s)	260, 278
Alw26I	GTCTC	2 cut(s)	98, 380
AlwI	GGATC	8 cut(s)	17, 30, 75, 94, 107, 124, 212, 362
AlwNI	CAGNNNCTG	1 cut(s)	357
AoxI	GGCC	4 cut(s)	253, 263, 291, 348
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	230, 253, 291, 348
AsuC2I	CCSGG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	2 cut(s)	22, 99
BanII	GRGCYC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	98, 380
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	85, 352
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	230, 253, 291, 348
BmiI	GGNNCC	2 cut(s)	24, 101
BmrFI	CCNGG	2 cut(s)	85, 352
BmsI	GCATC	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	295, 369
BpuMI	CCSGG	1 cut(s)	85
BsaI	GGTCTC	2 cut(s)	98, 380
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 109, 272
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	63, 109, 272
BseMII	CTCAG	3 cut(s)	116, 309, 383
BseNI	ACTGG	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	255, 265, 293, 350
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	63, 109, 272
BsmAI	GTCTC	2 cut(s)	98, 380
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	255, 265, 293, 350
Bso31I	GGTCTC	2 cut(s)	98, 380
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
BspACI	CCGC	2 cut(s)	202, 303
BspANI	GGCC	4 cut(s)	255, 265, 293, 350
BspCNI	CTCAG	3 cut(s)	117, 308, 382
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	24, 101
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	8 cut(s)	17, 30, 75, 94, 107, 124, 212, 362
BspTNI	GGTCTC	2 cut(s)	98, 380
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	267, 301, 378
BstDEI	CTNAG	3 cut(s)	125, 295, 369
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	7 cut(s)	25, 83, 102, 119, 124, 207, 357
BstMAI	GTCTC	2 cut(s)	98, 380
BstMBI	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 266, 275, 284
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	83, 350
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	79
BstX2I	RGATCY	5 cut(s)	22, 99, 116, 204, 354
BstYI	RGATCY	5 cut(s)	22, 99, 116, 204, 354
BsuRI	GGCC	4 cut(s)	255, 265, 293, 350
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	267, 301, 378
CaiI	CAGNNNCTG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	230, 253, 291, 348
CviAII	CATG	3 cut(s)	194, 383, 398
DdeI	CTNAG	3 cut(s)	125, 295, 369
DpnI	GATC	7 cut(s)	24, 82, 101, 118, 123, 206, 356
DpnII	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
EciI	GGCGGA	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	2 cut(s)	98, 380
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	3 cut(s)	197, 386, 401
FaiI	YATR	4 cut(s)	186, 195, 384, 399
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	3 cut(s)	193, 382, 397
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	370
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	255, 265, 293, 350
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	197, 386, 401
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	22, 121, 126
Hpy188III	TCNNGA	2 cut(s)	97, 146
Hpy8I	GTNNAC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	239, 380, 394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 266, 275, 284
HpyF3I	CTNAG	3 cut(s)	125, 295, 369
Hsp92II	CATG	3 cut(s)	197, 386, 401
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	335
MalI	GATC	7 cut(s)	24, 82, 101, 118, 123, 206, 356
MboI	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
MflI	RGATCY	5 cut(s)	22, 99, 116, 204, 354
MhlI	GDGCHC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	51, 106, 304
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	85, 352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	208, 266, 275, 284
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
NlaIII	CATG	3 cut(s)	197, 386, 401
NlaIV	GGNNCC	2 cut(s)	24, 101
NmeAIII	GCCGAG	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	24, 101
PspPI	GGNCC	4 cut(s)	230, 253, 291, 348
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	357
PsuI	RGATCY	5 cut(s)	22, 99, 116, 204, 354
Sau3AI	GATC	7 cut(s)	22, 80, 99, 116, 121, 204, 354
Sau96I	GGNCC	4 cut(s)	230, 253, 291, 348
ScrFI	CCNGG	2 cut(s)	85, 352
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	5 cut(s)	134, 222, 262, 280, 392
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	230
SsiI	CCGC	2 cut(s)	202, 303
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	83, 350
TaaI	ACNGT	1 cut(s)	73
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.