RchiOBHm_Chr4g0439251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010617
Physical Location & Seq
Forward (+)
61669784 .. 61670903
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40732

Sequence Viewer

Length: 348 bp
ATGGGATTGTGGAGTTCGATGGTGTCCTCCTGTGGTGGTCCGACGACGATGTCAGAGCGGCGGTGGTGGAGACCTGACGTCGATGGCGGAGTGGTGGGCATGGTGGTGCAGACGAGATCTTGGGCTGGGCGTGAAGAATGGAGGCCGACTGCACTTGTGCTCTGGGCTCGGGCTTTGTTGCTTGGGCTAGATGGAGTTTGGGCCTGGGTCTGTGTTTGGGCTCAGTTGTTGGGTCGGGTGCACTGCAATTTTGGCATAGACAATCTTCTATTCAGCGGTCTAGAGGTCGTTCCTGTTCTGGAGTTAGGTCAGCAGCGGTGGCGAAAATGTCTGGCGGTGGCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.96

Weight (kDa)

8.5

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AatII GACGTC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 58
AciI CCGC 6 cut(s) 58, 61, 87, 276, 316, 335
AcyI GRCGYC 1 cut(s) 78
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 203
Alw21I GWGCWC 2 cut(s) 162, 243
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 143, 201
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 38, 201
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 2 cut(s) 169, 223
Bbv12I GWGCWC 2 cut(s) 162, 243
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 13, 77, 185
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 3 cut(s) 188, 281, 346
BglII AGATCT 1 cut(s) 116
BisI GCNGC 2 cut(s) 59, 314
BlsI GCNGC 2 cut(s) 60, 315
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 38
BmeRI GACNNNNNGTC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 38, 201
BmrFI CCNGG 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 125
BsgI GTGCAG 2 cut(s) 128, 135
BshFI GGCC 2 cut(s) 145, 203
BsiHKAI GWGCWC 2 cut(s) 162, 243
BsiHKCI CYCGRG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 2 cut(s) 145, 203
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 4 cut(s) 162, 169, 223, 243
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 6 cut(s) 58, 61, 87, 276, 316, 335
BspANI GGCC 2 cut(s) 145, 203
BspCNI CTCAG 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 222
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 252, 319
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 145, 203
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 38, 201
CviAII CATG 1 cut(s) 100
CviJI RGCY 7 cut(s) 125, 145, 167, 173, 187, 203, 221
CviKI_1 RGCY 7 cut(s) 125, 145, 167, 173, 187, 203, 221
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 169, 223
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 2 cut(s) 169, 223
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 101, 257, 343
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 59, 314
FriOI GRGCYC 2 cut(s) 169, 223
Fsp4HI GCNGC 2 cut(s) 59, 314
FspBI CTAG 3 cut(s) 188, 281, 346
GluI GCNGC 2 cut(s) 59, 314
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 145, 203
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 42, 55
Hpy188III TCNNGA 2 cut(s) 281, 299
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 3 cut(s) 46, 49, 83
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 109, 152, 241, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 319
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 9 cut(s) 43, 87, 111, 148, 190, 217, 284, 306, 317
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 3 cut(s) 188, 281, 346
MaeII ACGT 1 cut(s) 78
MalI GATC 1 cut(s) 118
MbiI CCGCTC 1 cut(s) 58
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 146, 257
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 4 cut(s) 162, 169, 223, 243
MluCI AATT 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 3 cut(s) 37, 135, 277
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 276, 316
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 252, 319
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 103
PflFI GACNNNGTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 60, 315
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 2 cut(s) 38, 201
PsuI RGATCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 104
SatI GCNGC 2 cut(s) 59, 314
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 38, 201
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 4 cut(s) 162, 169, 223, 243
SetI ASST 4 cut(s) 76, 81, 288, 310
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 1 cut(s) 247
SsiI CCGC 6 cut(s) 58, 61, 87, 276, 316, 335
SspMI CTAG 3 cut(s) 188, 281, 346
StyD4I CCNGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 17, 81
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 61
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 313
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 49
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 38
XbaI TCTAGA 1 cut(s) 280
XspI CTAG 3 cut(s) 188, 281, 346
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.