Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010617

Physical Location & Seq

Genomic Coordinates Reverse (-)

12735039 .. 12735407

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATCAGAGGCAGTTTCATCCTCCTTTAGTGGTGCCCAATCTGGGGTGGTCGGTGGCGCAATTCAGGTTTGGTCTCTGGATCCAATCTGGGAAGGGATCTGATTTGAGCAGGGTTTGGTGCGTTCTAGATTGGATTTGCTGTGGTCGTGGTGGCATGAACGGGTATGGTCGTCATCGGTGGCGGATCTGGCAGGGCAAGGTAGTCGGTGGTCCGTCGGCAGTGGGGGGTTTGAGCCAAGCTCGGCCTGCTGGTGGAGCTTCTCTTGCTTGGGCCTCGGCCTGCGGTGTTTGGGCAGGGGCTTATTGCTGGGCTAGATGGAGTTTGGGCCTGGGTCTGTGCTTGGGCTCAGGTCCCAAACTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.12

Weight (kDa)

9.79

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341
rosa_laevigata	RLG00000027966
rosa_multiflora	Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056
rosa_roxburghii	Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440
rosa_samantha	Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	2 cut(s)	184, 285
AclWI	GGATC	5 cut(s)	12, 76, 89, 106, 194
AfiI	CCNNNNNNNGG	3 cut(s)	44, 45, 254
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	242, 260
AluI	AGCT	2 cut(s)	242, 260
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	5 cut(s)	12, 76, 89, 106, 194
AoxI	GGCC	4 cut(s)	245, 273, 279, 328
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	4 cut(s)	212, 273, 328, 353
AvaII	GGWCC	2 cut(s)	212, 353
BaeGI	GKGCMC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	350
BccI	CCATC	1 cut(s)	312
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	128, 315
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	212, 353
BmgT120I	GGNCC	4 cut(s)	212, 273, 328, 353
BmiI	GGNNCC	3 cut(s)	36, 83, 355
BmrFI	CCNGG	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
Bpu10I	CCTNAGC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	276, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 45, 254
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	276, 331
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	44, 45, 254
BseMII	CTCAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	309
BshFI	GGCC	4 cut(s)	247, 275, 281, 330
BshNI	GGYRCC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	44, 45, 254
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	4 cut(s)	247, 275, 281, 330
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	39, 350
Bsp143I	GATC	4 cut(s)	4, 81, 98, 186
BspACI	CCGC	2 cut(s)	184, 285
BspANI	GGCC	4 cut(s)	247, 275, 281, 330
BspCNI	CTCAG	1 cut(s)	362
BspLI	GGNNCC	3 cut(s)	36, 83, 355
BspPI	GGATC	5 cut(s)	12, 76, 89, 106, 194
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	276, 331
BssMI	GATC	4 cut(s)	4, 81, 98, 186
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	249, 283
BstDEI	CTNAG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	7, 84, 101, 189
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	4, 81, 98, 186
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 248, 257, 266
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	39
BstX2I	RGATCY	3 cut(s)	81, 98, 186
BstYI	RGATCY	3 cut(s)	81, 98, 186
BsuRI	GGCC	4 cut(s)	247, 275, 281, 330
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	249, 283
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	212, 273, 328, 353
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	4 cut(s)	6, 83, 100, 188
DpnII	GATC	4 cut(s)	4, 81, 98, 186
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	212, 353
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	350
FaeI	CATG	1 cut(s)	160
FaiI	YATR	2 cut(s)	158, 168
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	156
FokI	GGATG	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	128, 315
GlaI	GCGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	4 cut(s)	247, 275, 281, 330
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	9, 103
Hpy188III	TCNNGA	2 cut(s)	79, 128
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 248, 257, 266
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	4, 81, 98, 186
LmnI	GCTCC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	128, 315
MalI	GATC	4 cut(s)	6, 83, 100, 188
MboI	GATC	4 cut(s)	4, 81, 98, 186
MflI	RGATCY	3 cut(s)	81, 98, 186
MhlI	GDGCHC	2 cut(s)	39, 350
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	3 cut(s)	3, 33, 286
MseI	TTAA	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	190, 248, 257, 266
NdeII	GATC	4 cut(s)	4, 81, 98, 186
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	36, 83, 355
NmeAIII	GCCGAG	2 cut(s)	223, 257
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	36, 83, 355
PspPI	GGNCC	4 cut(s)	212, 273, 328, 353
PspPPI	RGGWCCY	1 cut(s)	353
PsuI	RGATCY	3 cut(s)	81, 98, 186
SaqAI	TTAA	1 cut(s)	367
Sau3AI	GATC	4 cut(s)	4, 81, 98, 186
Sau96I	GGNCC	4 cut(s)	212, 273, 328, 353
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	39, 350
SetI	ASST	5 cut(s)	71, 204, 244, 262, 355
SinI	GGWCC	2 cut(s)	212, 353
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	2 cut(s)	184, 285
SspMI	CTAG	2 cut(s)	128, 315
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	363
TasI	AATT	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	8, 173
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	212, 353
XbaI	TCTAGA	1 cut(s)	127
XspI	CTAG	2 cut(s)	128, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.