Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010617

Physical Location & Seq

Genomic Coordinates Forward (+)

15519232 .. 15519555

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCTTCGGAGCCCGGACCCGATTCCGGCGTGGAGCTTCGGAGCTTCCCGGACATCCGACAAACAAAACCGGCGAAGCCCGGACCGTGTTCGGGCGTGGAGCTTCGGAGCTTCCGGACATCCGACGAACAAAACCGGCGAAGCCTAGACCCGATTCCAACGTGGAGAGCTTCCCGGACATCCGACGAACAAAACCGGCGAAGCCCGCAGGGGTTGGGATCGTGGAGTTGGATGGCGTCATCCTCTCGGTGGTCCGACCGTGGGATAGAGCGGCGGCGGTGGAGGCCGACATTGACGGTGGAGTGGTGGGTGTGGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.39

Weight (kDa)

10.43

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341
rosa_laevigata	RLG00000027966
rosa_multiflora	Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056
rosa_roxburghii	Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440
rosa_samantha	Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	4 cut(s)	207, 272, 275, 278
AclWI	GGATC	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	4 cut(s)	27, 93, 250, 262
AluBI	AGCT	6 cut(s)	6, 38, 46, 104, 112, 171
AluI	AGCT	6 cut(s)	6, 38, 46, 104, 112, 171
AlwI	GGATC	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	18, 84, 253
AsuC2I	CCSGG	4 cut(s)	16, 51, 82, 176
AvaII	GGWCC	3 cut(s)	18, 84, 253
BanII	GRGCYC	1 cut(s)	16
BccI	CCATC	1 cut(s)	227
BcnI	CCSGG	4 cut(s)	16, 51, 82, 176
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
Bme1390I	CCNGG	4 cut(s)	16, 51, 82, 176
Bme18I	GGWCC	3 cut(s)	18, 84, 253
BmgT120I	GGNCC	3 cut(s)	18, 84, 253
BmiI	GGNNCC	2 cut(s)	13, 20
BmrFI	CCNGG	4 cut(s)	16, 51, 82, 176
BpuMI	CCSGG	4 cut(s)	16, 51, 82, 176
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 93, 250, 262
Bse118I	RCCGGY	3 cut(s)	71, 136, 196
BseAI	TCCGGA	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	5 cut(s)	55, 120, 180, 238, 240
BseLI	CCNNNNNNNGG	4 cut(s)	27, 93, 250, 262
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	9 cut(s)	16, 28, 51, 72, 82, 116, 137, 176, 197
BslI	CCNNNNNNNGG	4 cut(s)	27, 93, 250, 262
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	207, 272, 275, 278
BspANI	GGCC	1 cut(s)	287
BspEI	TCCGGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	13, 20
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	272
BsrFI	RCCGGY	3 cut(s)	71, 136, 196
BssAI	RCCGGY	3 cut(s)	71, 136, 196
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	88, 261, 299
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	55, 120, 180, 238, 240
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 284
BstSCI	CCNGG	4 cut(s)	14, 49, 80, 174
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	55, 120, 180, 238, 240
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	3 cut(s)	71, 136, 196
Cfr13I	GGNCC	3 cut(s)	18, 84, 253
CpoI	CGGWCCG	1 cut(s)	84
CseI	GACGC	1 cut(s)	226
CspI	CGGWCCG	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	18, 84, 253
EcoT38I	GRGCYC	1 cut(s)	16
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	273, 276
FokI	GGATG	5 cut(s)	42, 107, 167, 227, 245
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	273, 276
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	273, 276
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	9 cut(s)	16, 28, 51, 72, 82, 116, 137, 176, 197
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	24, 155
HpaII	CCGG	9 cut(s)	16, 28, 51, 72, 82, 116, 137, 176, 197
Hpy188I	TCNGA	7 cut(s)	11, 43, 60, 109, 125, 185, 257
Hpy188III	TCNNGA	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	129, 189
HpyCH4III	ACNGT	3 cut(s)	88, 261, 299
HpyCH4IV	ACGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 284
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	5 cut(s)	11, 35, 43, 101, 109
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	221
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	16
MmeI	TCCRAC	6 cut(s)	83, 148, 183, 208, 210, 280
MnlI	CCTC	2 cut(s)	254, 277
MroI	TCCGGA	1 cut(s)	115
MspI	CCGG	9 cut(s)	16, 28, 51, 72, 82, 116, 137, 176, 197
MspR9I	CCNGG	4 cut(s)	16, 51, 82, 176
MwoI	GCNNNNNNNGC	2 cut(s)	206, 284
NciI	CCSGG	4 cut(s)	16, 51, 82, 176
NdeII	GATC	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	13, 20
PfeI	GAWTC	2 cut(s)	24, 155
PfoI	TCCNGGA	2 cut(s)	49, 174
PkrI	GCNGC	2 cut(s)	274, 277
PspN4I	GGNNCC	2 cut(s)	13, 20
PspPI	GGNCC	3 cut(s)	18, 84, 253
Rsr2I	CGGWCCG	1 cut(s)	84
RsrII	CGGWCCG	1 cut(s)	84
SatI	GCNGC	2 cut(s)	273, 276
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	3 cut(s)	18, 84, 253
ScrFI	CCNGG	4 cut(s)	16, 51, 82, 176
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	7 cut(s)	8, 40, 48, 106, 114, 165, 173
SinI	GGWCC	3 cut(s)	18, 84, 253
SsiI	CCGC	4 cut(s)	207, 272, 275, 278
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	14, 49, 80, 174
TaaI	ACNGT	3 cut(s)	88, 261, 299
TaiI	ACGT	1 cut(s)	165
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	2 cut(s)	24, 155
VpaK11BI	GGWCC	3 cut(s)	18, 84, 253
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.