Rroxscaffold_5G00383440

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
63041987 .. 63044213
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383440.1

Sequence Viewer

Length: 270 bp
ATGTCTCGTTTGACCCCGATAAGCGGATATTTTCCGACAGGTCGTTTGCAACTTGCAACTGGAAAAAGCCCTTTGATCTCCGGGTCGTTCCCGTTTTGGAGTTGGGTCGCGGCGATGGCGAAAATGTCCGACCGTGGCATAGGCAATCATCCTTGGCCTTCTAGTGGGTCGTTCCCGTCCGGTTTCGGGTTAGAGGCGATGGCGATTTGGAGCAAGAGCGGATTTAACGGTGTTGACAAGACGATGGTGACGGTGTTGGGTTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.48

Weight (kDa)

10.16

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 24, 110, 219
AfiI CCNNNNNNNGG 3 cut(s) 23, 164, 186
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 259
BccI CCATC 3 cut(s) 109, 193, 238
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 133, 152
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 164, 186
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 133, 152
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 23, 164, 186
BseNI ACTGG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 81, 180
BslI CCNNNNNNNGG 3 cut(s) 23, 164, 186
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 3 cut(s) 24, 110, 219
BspANI GGCC 1 cut(s) 157
BspFNI CGCG 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 133, 152
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 134, 230, 253
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 75
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 80
BstUI CGCG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 133
BtgZI GCGATG 2 cut(s) 128, 212
BtsCI GGATG 1 cut(s) 148
CviJI RGCY 2 cut(s) 69, 157
CviKI_1 RGCY 2 cut(s) 69, 157
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaiI YATR 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 81, 180
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 2 cut(s) 81, 180
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 235, 263
Hpy188I TCNGA 2 cut(s) 36, 130
Hpy8I GTNNAC 2 cut(s) 235, 263
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 3 cut(s) 134, 230, 253
HpyCH4V TGCA 2 cut(s) 49, 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 24, 45, 94, 193
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 77
MbiI CCGCTC 1 cut(s) 219
MboI GATC 1 cut(s) 75
MmeI TCCRAC 2 cut(s) 59, 153
MnlI CCTC 1 cut(s) 187
MseI TTAA 1 cut(s) 225
MspI CCGG 2 cut(s) 81, 180
MspR9I CCNGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 82
NdeII GATC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 82
SetI ASST 1 cut(s) 43
SsiI CCGC 3 cut(s) 24, 110, 219
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 134, 230, 253
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.