Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0010617

Physical Location & Seq

Genomic Coordinates Forward (+)

212661 .. 215849

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggtcaccggccaccggattccggtcaactttagtcgaattttggtcaactatcgcaggattccggccaactttcgcaggaatccggtcactggccgtcgcccaccagacttttctaaaaacctcgctagatgtcccctaagatgctctccaatcccaaacgacgacgttgaccctgacaacaaatcggggacaaagctcttgagcatcggcatccggtcaccaaaatcgtcttcaggtccagaatcaaggctgggccttgtcgatccaaataggaggcgtcgggttgagaaggatgagacacagagagagagagagagacagtgtatggagagagtcgagttgcagaagaaaattgatgtctccggcgagaaccggtcgcccacgacgccgactctcgccatcgcctcgccgaaattcgtcgtcgtgctctctgcggccaggctagaggccaagccaacggtcctcgtcgctgagaagctcggggaggccgggttggaccttctgaaggaatcgacgaccgccagtagaatccggtacgtctttgatttgcttctgtctctctcgccggcgactgatcatcacgaaaattgcaacttgattgtatctcctgtcccggactgcaactggagtcgttgcaatcggagtcaaatcagtgtgaaggcaaacgcccaaactcgattccggcttggagcttcggagcttcccggacatctgacaaacaaaactggcgaagcccagacccaattccagcgtggagagtttcccggacatctgacgaacaaaatcggcgaagcccagagggtttgggatcgtggagttggatggcgtcatcctttggtggtccgacggtgggacagagtggcggcggcggagaccgacatcgacggtggagtggtgggcgtggtggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

304

Amino Acids

33.89

Weight (kDa)

10.02

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341591 RchiOBHm_Chr4g0439251 RchiOBHm_Chr6g0299511 RchiOBHm_Chr7g0195341
rosa_laevigata	RLG00000027966
rosa_multiflora	Rmu_co8079744.1_g000001 Rmu_sc0000007.1_g000018 Rmu_sc0006244.1_g000056
rosa_roxburghii	Rroxscaffold_1G00002870 Rroxscaffold_1G00012660 Rroxscaffold_1G00025380 Rroxscaffold_2G00077540 Rroxscaffold_2G00091390 Rroxscaffold_3G00222820 Rroxscaffold_3G00250020 Rroxscaffold_3G00264890 Rroxscaffold_5G00383440
rosa_samantha	Rh2CG071700 Rh3CG292600 Rh5AG323700 Rh7CG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	437, 522, 866, 869, 872
AclWI	GGATC	2 cut(s)	260, 819
AcoI	YGGCCR	4 cut(s)	10, 66, 94, 438
AcsI	RAATTY	2 cut(s)	39, 416
AcuI	CTGAAG	2 cut(s)	219, 527
AcyI	GRCGYC	3 cut(s)	280, 389, 829
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	5 cut(s)	15, 22, 92, 508, 853
AgeI	ACCGGT	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	4 cut(s)	199, 481, 695, 703
AluI	AGCT	4 cut(s)	199, 481, 695, 703
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	5 cut(s)	293, 313, 367, 564, 869
AlwI	GGATC	2 cut(s)	260, 819
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	7 cut(s)	10, 66, 94, 256, 438, 450, 489
ApoI	RAATTY	2 cut(s)	39, 416
AsiGI	ACCGGT	1 cut(s)	375
AspS9I	GGNCC	5 cut(s)	239, 256, 463, 499, 844
AsuC2I	CCSGG	4 cut(s)	493, 617, 708, 768
AsuHPI	GGTGA	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	4 cut(s)	239, 463, 499, 844
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	410, 819
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	442
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	4 cut(s)	493, 617, 708, 768
BcoDI	GTCTC	5 cut(s)	293, 313, 367, 564, 869
BfaI	CTAG	2 cut(s)	129, 446
BisI	GCNGC	3 cut(s)	438, 867, 870
BlsI	GCNGC	3 cut(s)	439, 868, 871
Bme1390I	CCNGG	5 cut(s)	442, 493, 617, 708, 768
Bme18I	GGWCC	4 cut(s)	239, 463, 499, 844
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	5 cut(s)	239, 256, 463, 499, 844
BmrFI	CCNGG	5 cut(s)	442, 493, 617, 708, 768
BmsI	GCATC	3 cut(s)	134, 216, 222
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	4 cut(s)	493, 617, 708, 768
BsaHI	GRCGYC	3 cut(s)	280, 389, 829
BsaI	GGTCTC	1 cut(s)	869
BsaWI	WCCGGW	6 cut(s)	15, 22, 85, 216, 375, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 22, 92, 508, 853
Bse118I	RCCGGY	3 cut(s)	8, 375, 568
Bse1I	ACTGG	4 cut(s)	97, 525, 632, 733
BseBI	CCWGG	1 cut(s)	442
BseGI	GGATG	4 cut(s)	213, 301, 830, 832
BseLI	CCNNNNNNNGG	5 cut(s)	15, 22, 92, 508, 853
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	4 cut(s)	97, 525, 632, 733
BseYI	CCCAGC	1 cut(s)	253
Bsh1285I	CGRYCG	2 cut(s)	380, 522
BshFI	GGCC	7 cut(s)	12, 68, 96, 258, 440, 452, 491
BshTI	ACCGGT	1 cut(s)	375
BsiEI	CGRYCG	2 cut(s)	380, 522
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	482
BslFI	GGGAC	4 cut(s)	120, 205, 599, 869
BslI	CCNNNNNNNGG	5 cut(s)	15, 22, 92, 508, 853
BsmAI	GTCTC	5 cut(s)	293, 313, 367, 564, 869
BsmFI	GGGAC	4 cut(s)	120, 205, 599, 869
BsnI	GGCC	7 cut(s)	12, 68, 96, 258, 440, 452, 491
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	265, 577, 811
BspACI	CCGC	5 cut(s)	437, 522, 866, 869, 872
BspANI	GGCC	7 cut(s)	12, 68, 96, 258, 440, 452, 491
BspCNI	CTCAG	1 cut(s)	466
BspPI	GGATC	2 cut(s)	260, 819
BspTNI	GGTCTC	1 cut(s)	869
BsrFI	RCCGGY	3 cut(s)	8, 375, 568
BsrI	ACTGG	4 cut(s)	97, 525, 632, 733
BssAI	RCCGGY	3 cut(s)	8, 375, 568
BssMI	GATC	3 cut(s)	265, 577, 811
BssNI	GRCGYC	3 cut(s)	280, 389, 829
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	4 cut(s)	324, 463, 852, 890
BstACI	GRCGYC	3 cut(s)	280, 389, 829
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	3 cut(s)	140, 474, 912
BstEII	GGTNACC	2 cut(s)	4, 219
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	4 cut(s)	213, 301, 830, 832
BstKTI	GATC	3 cut(s)	268, 580, 814
BstMAI	GTCTC	5 cut(s)	293, 313, 367, 564, 869
BstMBI	GATC	3 cut(s)	265, 577, 811
BstMCI	CGRYCG	2 cut(s)	380, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	442
BstPI	GGTNACC	2 cut(s)	4, 219
BstSCI	CCNGG	5 cut(s)	440, 491, 615, 706, 766
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	7 cut(s)	12, 68, 96, 258, 440, 452, 491
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	4 cut(s)	213, 301, 830, 832
BtsIMutI	CAGTG	3 cut(s)	90, 329, 661
Cac8I	GCNNGC	1 cut(s)	570
Cfr10I	RCCGGY	3 cut(s)	8, 375, 568
Cfr13I	GGNCC	5 cut(s)	239, 256, 463, 499, 844
CseI	GACGC	3 cut(s)	269, 397, 818
Csp6I	GTAC	1 cut(s)	538
CspAI	ACCGGT	1 cut(s)	375
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	140, 474, 912
DpnI	GATC	3 cut(s)	267, 579, 813
DpnII	GATC	3 cut(s)	265, 577, 811
EaeI	YGGCCR	4 cut(s)	10, 66, 94, 438
EciI	GGCGGA	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	869
Eco47I	GGWCC	4 cut(s)	239, 463, 499, 844
Eco57I	CTGAAG	2 cut(s)	219, 527
Eco88I	CYCGRG	1 cut(s)	482
Eco91I	GGTNACC	2 cut(s)	4, 219
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO65I	GGTNACC	2 cut(s)	4, 219
EcoRII	CCWGG	1 cut(s)	440
FaiI	YATR	1 cut(s)	329
FaqI	GGGAC	4 cut(s)	120, 205, 599, 869
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	3 cut(s)	438, 867, 870
FokI	GGATG	4 cut(s)	200, 308, 819, 837
Fsp4HI	GCNGC	3 cut(s)	438, 867, 870
FspBI	CTAG	2 cut(s)	129, 446
GluI	GCNGC	3 cut(s)	438, 867, 870
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	649
HaeIII	GGCC	7 cut(s)	12, 68, 96, 258, 440, 452, 491
HgaI	GACGC	3 cut(s)	269, 397, 818
Hin1I	GRCGYC	3 cut(s)	280, 389, 829
HincII	GTYRAC	3 cut(s)	28, 49, 172
HindII	GTYRAC	3 cut(s)	28, 49, 172
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	3 cut(s)	28, 49, 172
Hpy188I	TCNGA	6 cut(s)	507, 645, 700, 717, 777, 848
Hpy188III	TCNNGA	3 cut(s)	202, 242, 584
Hpy8I	GTNNAC	3 cut(s)	28, 49, 172
HpyAV	CCTTC	4 cut(s)	286, 502, 512, 655
HpyCH4III	ACNGT	4 cut(s)	324, 463, 852, 890
HpyCH4IV	ACGT	2 cut(s)	168, 540
HpyCH4V	TGCA	4 cut(s)	346, 594, 624, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	140, 474, 912
HpySE526I	ACGT	2 cut(s)	168, 540
Hsp92I	GRCGYC	3 cut(s)	280, 389, 829
KroI	GCCGGC	1 cut(s)	568
KroNI	GCCGGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	265, 577, 811
LmnI	GCTCC	2 cut(s)	692, 700
LweI	GCATC	3 cut(s)	134, 216, 222
MaeI	CTAG	2 cut(s)	129, 446
MaeII	ACGT	2 cut(s)	168, 540
MaeIII	GTNAC	3 cut(s)	4, 88, 219
MalI	GATC	3 cut(s)	267, 579, 813
MboI	GATC	3 cut(s)	265, 577, 811
MboII	GAAGA	2 cut(s)	225, 361
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	5 cut(s)	39, 354, 416, 589, 746
MlyI	GAGTC	4 cut(s)	345, 388, 640, 655
MmeI	TCCRAC	3 cut(s)	477, 802, 871
MnlI	CCTC	7 cut(s)	134, 270, 418, 442, 476, 481, 795
MreI	CGCCGGCG	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	568
MspR9I	CCNGG	5 cut(s)	442, 493, 617, 708, 768
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	388
NaeI	GCCGGC	1 cut(s)	570
NciI	CCSGG	4 cut(s)	493, 617, 708, 768
NdeII	GATC	3 cut(s)	265, 577, 811
NgoMIV	GCCGGC	1 cut(s)	568
NmuCI	GTSAC	3 cut(s)	4, 88, 219
PdiI	GCCGGC	1 cut(s)	570
PfeI	GAWTC	7 cut(s)	19, 61, 82, 245, 512, 531, 681
PfoI	TCCNGGA	3 cut(s)	615, 706, 766
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	439, 868, 871
PleI	GAGTC	4 cut(s)	344, 388, 639, 654
PpsI	GAGTC	4 cut(s)	344, 388, 639, 654
Psp6I	CCWGG	1 cut(s)	440
PspEI	GGTNACC	2 cut(s)	4, 219
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	440
PspPI	GGNCC	5 cut(s)	239, 256, 463, 499, 844
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SatI	GCNGC	3 cut(s)	438, 867, 870
Sau3AI	GATC	3 cut(s)	265, 577, 811
Sau96I	GGNCC	5 cut(s)	239, 256, 463, 499, 844
SchI	GAGTC	4 cut(s)	345, 388, 640, 655
ScrFI	CCNGG	5 cut(s)	442, 493, 617, 708, 768
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	126, 171, 201, 241, 483, 504, 543, 697, 705
SfaNI	GCATC	3 cut(s)	134, 216, 222
SgrAI	CRCCGGYG	1 cut(s)	568
SinI	GGWCC	4 cut(s)	239, 463, 499, 844
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	5 cut(s)	39, 354, 416, 589, 746
SsiI	CCGC	5 cut(s)	437, 522, 866, 869, 872
SspMI	CTAG	2 cut(s)	129, 446
StyD4I	CCNGG	5 cut(s)	440, 491, 615, 706, 766
TaaI	ACNGT	4 cut(s)	324, 463, 852, 890
TaiI	ACGT	2 cut(s)	171, 543
TaqI	TCGA	6 cut(s)	37, 264, 339, 515, 679, 885
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	5 cut(s)	39, 354, 416, 589, 746
TauI	GCSGC	3 cut(s)	440, 869, 872
TfiI	GAWTC	7 cut(s)	19, 61, 82, 245, 512, 531, 681
TscAI	CASTG	3 cut(s)	97, 329, 661
TseFI	GTSAC	3 cut(s)	4, 88, 219
Tsp45I	GTSAC	3 cut(s)	4, 88, 219
TspRI	CASTG	3 cut(s)	97, 329, 661
VpaK11BI	GGWCC	4 cut(s)	239, 463, 499, 844
XagI	CCTNNNNNAGG	1 cut(s)	506
XapI	RAATTY	2 cut(s)	39, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XspI	CTAG	2 cut(s)	129, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.