Rmu_co8079744.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8079744.1
OG0010617
Physical Location & Seq
Reverse (-)
1 .. 497
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8079744.1_g000001.1.cds

Sequence Viewer

Length: 296 bp
atgtggaggagacccatagccggcggcattgggttggggagtttagatgcaggtggtggtgtgcaggcggtggtgtttgcaggtggtgggtgtggcggcctgctgagagtttttgacaatcttctcttcgccggtcgagaggttgttcctgttctggagttcggtcagcagcggtggcgaaaatgtctggcaatagacaatcatccttggtcatctagtgggtccttcctgtctgtgattgggtctaaggcgatggcgatttggagcagtggtggatggatggtgttgacaagagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.41

Weight (kDa)

10.07

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 41, 71
Acc36I ACCTGC 2 cut(s) 41, 71
AciI CCGC 4 cut(s) 24, 68, 96, 172
AfiI CCNNNNNNNGG 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 4
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 222
AvaII GGWCC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 181
BccI CCATC 3 cut(s) 247, 270, 274
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 1 cut(s) 216
BfuAI ACCTGC 2 cut(s) 41, 71
BisI GCNGC 3 cut(s) 25, 97, 170
BlsI GCNGC 3 cut(s) 26, 98, 171
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 2 cut(s) 20, 131
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 3 cut(s) 202, 281, 285
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 21, 132
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 4
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 4
BspACI CCGC 4 cut(s) 24, 68, 96, 172
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 223
BspMI ACCTGC 2 cut(s) 41, 71
BspTNI GGTCTC 1 cut(s) 4
BsrFI RCCGGY 2 cut(s) 20, 131
BssAI RCCGGY 2 cut(s) 20, 131
BssECI CCNNGG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 22, 66, 101
BstDEI CTNAG 2 cut(s) 104, 246
BstF5I GGATG 3 cut(s) 202, 281, 285
BstMAI GTCTC 1 cut(s) 4
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 3 cut(s) 202, 281, 285
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 2 cut(s) 41, 71
Cac8I GCNNGC 3 cut(s) 22, 66, 101
Cfr10I RCCGGY 2 cut(s) 20, 131
Cfr13I GGNCC 1 cut(s) 222
CviJI RGCY 2 cut(s) 20, 99
CviKI_1 RGCY 2 cut(s) 20, 99
DdeI CTNAG 2 cut(s) 104, 246
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaiI YATR 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 25, 97, 170
FokI GGATG 3 cut(s) 189, 288, 292
Fsp4HI GCNGC 3 cut(s) 25, 97, 170
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 25, 97, 170
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 21, 132
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HpaII CCGG 2 cut(s) 21, 132
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 137, 155
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 50, 64, 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 104, 246
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 216
MboII GAAGA 2 cut(s) 113, 118
MnlI CCTC 2 cut(s) 133, 287
MroNI GCCGGC 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 2 cut(s) 21, 132
MwoI GCNNNNNNNGC 1 cut(s) 175
NaeI GCCGGC 1 cut(s) 22
NgoMIV GCCGGC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 223
PaqCI CACCTGC 2 cut(s) 41, 71
PdiI GCCGGC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 26, 98, 171
PpuMI RGGWCCY 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
SatI GCNGC 3 cut(s) 25, 97, 170
Sau96I GGNCC 1 cut(s) 222
SetI ASST 3 cut(s) 55, 85, 144
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 222
SsiI CCGC 4 cut(s) 24, 68, 96, 172
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 1 cut(s) 136
TaqII GACCGA 1 cut(s) 152
TauI GCSGC 2 cut(s) 27, 99
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 169
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 222
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.