Rroxscaffold_1G00025380

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
31863244 .. 31866111
2868 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00025380.1

Sequence Viewer

Length: 159 bp
ATGGCGTTTTGGAGCGAGTGGTGGATGGATGGTGTTGACAATAGGGTGGTGATGGGGCTTATAGCTATAACTCCGGCGCCGGCGCAGAGCTTTCTGCCCCTTCTCATGGACGAGGGAATGCTTCTTTTCAGAGGCTTATCGCCTGACATTCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.87

Weight (kDa)

4.05

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 106
AluBI AGCT 2 cut(s) 65, 90
AluI AGCT 2 cut(s) 65, 90
AspLEI GCGC 2 cut(s) 79, 85
AsuHPI GGTGA 1 cut(s) 61
BanI GGYRCC 1 cut(s) 76
BccI CCATC 3 cut(s) 19, 23, 46
BfoI RGCGCY 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 79
BseGI GGATG 2 cut(s) 30, 34
BseLI CCNNNNNNNGG 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 74, 80
BslI CCNNNNNNNGG 1 cut(s) 106
BsmI GAATGC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 2 cut(s) 30, 34
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 85
BtsCI GGATG 2 cut(s) 30, 34
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 79, 85
Cfr10I RCCGGY 1 cut(s) 79
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 58, 65, 90, 135
CviKI_1 RGCY 4 cut(s) 58, 65, 90, 135
DinI GGCGCC 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 62, 68, 107
FatI CATG 1 cut(s) 105
FokI GGATG 2 cut(s) 37, 41
GlaI GCGC 2 cut(s) 78, 84
HaeII RGCGCY 1 cut(s) 80
HapII CCGG 2 cut(s) 74, 80
HhaI GCGC 2 cut(s) 79, 85
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 77, 83
HinP1I GCGC 2 cut(s) 77, 83
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HpaII CCGG 2 cut(s) 74, 80
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 77, 83
KasI GGCGCC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 87, 93
MboII GAAGA 1 cut(s) 143
Mly113I GGCGCC 1 cut(s) 77
MnlI CCTC 2 cut(s) 106, 125
MreI CGCCGGCG 1 cut(s) 79
MroNI GCCGGC 1 cut(s) 79
MspI CCGG 2 cut(s) 74, 80
Mva1269I GAATGC 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 81
NarI GGCGCC 1 cut(s) 77
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 78
PctI GAATGC 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 81
PluTI GGCGCC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 78
SetI ASST 2 cut(s) 67, 92
SfoI GGCGCC 1 cut(s) 78
SgeI CNNG 6 cut(s) 28, 86, 92, 118, 124, 155
SgrAI CRCCGGYG 1 cut(s) 79
SspDI GGCGCC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.