Rroxscaffold_3G00264890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010617
Physical Location & Seq
Forward (+)
58397910 .. 58400604
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264890.1

Sequence Viewer

Length: 600 bp
ATGGGGGCCGAGACGGCCGAATCGCCGGGAATCGCAAAAGTCCCAAACTGCAGCCGGAGGAGGTTTCGCTTCGATCCGTGGTTTTCCGGCCAAATCGTGGCAAACCAAGGCTGCTGGGGTGTTCGGAGGGAGGAGGCGCTCCTCCGCACGGTGGCACGTCCTACGGTGGCGGAATCGCCGGAAATCGGAGGGAGGAAGGAGGAGGCCGAACCGGAGAGGGAGAGATCGGGGGAGAGGAGAGAGAAAGAGCGGGTGGGTTTCCGAAATGGAAACCTACCCGGTGTGGAGGCTGTGGGTGGCGTTGTGAGTATGGCGCCGTGGCGTGGTTCGGATCGGCGGCGGTTTCATCCTCCTTCGGTGGTGTCCATTATCGGGTGGTCGGTGGCTCGATCCGGGATGGGTCTCGGATCCACTCGGGGAGGGATCTTATCCGAGCGAGGTTTGGGCGCGTTTCGGATTGGATTTGCTTGTGGTCGTGGTGGCATGAACGGTTACCATCAAGGTTTTGTTTTAAGTTTAGTTGTTGGGTCGGGTGCACGCAATTTTGGCATAGACAATCTTCTATTCGGTGGTCTAGAGGTCGTTCTGTTGCGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.48

Weight (kDa)

10.81

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 250
AccII CGCG 1 cut(s) 449
AciI CCGC 6 cut(s) 145, 170, 250, 337, 340, 592
AclWI GGATC 6 cut(s) 68, 339, 384, 402, 415, 431
AcoI YGGCCR 2 cut(s) 15, 88
AcyI GRCGYC 1 cut(s) 314
AfiI CCNNNNNNNGG 6 cut(s) 97, 148, 151, 185, 323, 372
AjiI CACGTC 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 2 cut(s) 5, 407
Alw44I GTGCAC 1 cut(s) 534
AlwI GGATC 6 cut(s) 68, 339, 384, 402, 415, 431
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 4 cut(s) 6, 15, 88, 204
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 2 cut(s) 51, 111
AspLEI GCGC 3 cut(s) 139, 316, 449
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 3 cut(s) 27, 279, 394
AvaI CYCGRG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 538
BamHI GGATCC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 63, 98
BccI CCATC 2 cut(s) 391, 504
BceAI ACGGC 2 cut(s) 30, 301
BcnI CCSGG 3 cut(s) 27, 279, 394
BcoDI GTCTC 2 cut(s) 5, 407
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 2 cut(s) 140, 317
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 52, 112, 338
BlsI GCNGC 3 cut(s) 53, 113, 339
Bme1390I CCNGG 3 cut(s) 27, 279, 394
BmeT110I CYCGRG 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 3 cut(s) 7, 315, 409
BmrFI CCNGG 3 cut(s) 27, 279, 394
BpuMI CCSGG 3 cut(s) 27, 279, 394
BsaHI GRCGYC 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 77, 106, 317
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 148, 151, 185, 323, 372
BseDI CCNNGG 3 cut(s) 77, 106, 317
BseGI GGATG 2 cut(s) 346, 402
BseLI CCNNNNNNNGG 6 cut(s) 97, 148, 151, 185, 323, 372
BseRI GAGGAG 5 cut(s) 73, 131, 146, 215, 250
BseSI GKGCMC 1 cut(s) 538
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 63, 98
BseYI CCCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 4 cut(s) 8, 17, 90, 206
BshNI GGYRCC 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 7 cut(s) 26, 55, 87, 179, 212, 279, 393
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 6 cut(s) 97, 148, 151, 185, 323, 372
BsmAI GTCTC 2 cut(s) 5, 407
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 4 cut(s) 8, 17, 90, 206
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 6 cut(s) 73, 224, 331, 389, 407, 423
BspACI CCGC 6 cut(s) 145, 170, 250, 337, 340, 592
BspANI GGCC 4 cut(s) 8, 17, 90, 206
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 3 cut(s) 7, 315, 409
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 6 cut(s) 68, 339, 384, 402, 415, 431
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 77, 106, 317
BssMI GATC 6 cut(s) 73, 224, 331, 389, 407, 423
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 151, 166, 491
BstACI GRCGYC 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 538
BstDSI CCRYGG 2 cut(s) 77, 317
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 2 cut(s) 346, 402
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 2 cut(s) 140, 317
BstHHI GCGC 3 cut(s) 139, 316, 449
BstKTI GATC 6 cut(s) 76, 227, 334, 392, 410, 426
BstMAI GTCTC 2 cut(s) 5, 407
BstMBI GATC 6 cut(s) 73, 224, 331, 389, 407, 423
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 14, 546
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 3 cut(s) 25, 277, 392
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 2 cut(s) 63, 98
BstX2I RGATCY 2 cut(s) 407, 423
BstYI RGATCY 2 cut(s) 407, 423
BstZI CGGCCG 1 cut(s) 15
BsuRI GGCC 4 cut(s) 8, 17, 90, 206
BtgI CCRYGG 2 cut(s) 77, 317
BtrI CACGTC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 346, 402
Cac8I GCNNGC 1 cut(s) 538
CfoI GCGC 3 cut(s) 139, 316, 449
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 484
CviJI RGCY 8 cut(s) 8, 17, 54, 90, 111, 206, 290, 386
CviKI_1 RGCY 8 cut(s) 8, 17, 54, 90, 111, 206, 290, 386
DinI GGCGCC 1 cut(s) 315
DpnI GATC 6 cut(s) 75, 226, 333, 391, 409, 425
DpnII GATC 6 cut(s) 73, 224, 331, 389, 407, 423
EaeI YGGCCR 2 cut(s) 15, 88
EagI CGGCCG 1 cut(s) 15
EciI GGCGGA 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 407
Eco52I CGGCCG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 106
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 1 cut(s) 487
FaiI YATR 3 cut(s) 311, 485, 551
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 483
FauI CCCGC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 52, 112, 338
FokI GGATG 2 cut(s) 333, 409
Fsp4HI GCNGC 3 cut(s) 52, 112, 338
FspBI CTAG 1 cut(s) 575
GlaI GCGC 3 cut(s) 138, 315, 448
GluI GCNGC 3 cut(s) 52, 112, 338
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 2 cut(s) 140, 317
HaeIII GGCC 4 cut(s) 8, 17, 90, 206
HapII CCGG 7 cut(s) 26, 55, 87, 179, 212, 279, 393
HhaI GCGC 3 cut(s) 139, 316, 449
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 1 cut(s) 487
Hin6I GCGC 3 cut(s) 137, 314, 447
HinP1I GCGC 3 cut(s) 137, 314, 447
HinfI GANTC 3 cut(s) 20, 30, 173
HpaII CCGG 7 cut(s) 26, 55, 87, 179, 212, 279, 393
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 7 cut(s) 126, 188, 263, 331, 407, 433, 456
Hpy188III TCNNGA 1 cut(s) 575
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 190, 363
HpyCH4III ACNGT 3 cut(s) 151, 166, 491
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 51, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 546
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 1 cut(s) 487
HspAI GCGC 3 cut(s) 137, 314, 447
KasI GGCGCC 1 cut(s) 313
Kzo9I GATC 6 cut(s) 73, 224, 331, 389, 407, 423
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 39, 68, 100, 100, 192, 225, 292, 406
Lsp1109I GCAGC 2 cut(s) 63, 98
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 491
MalI GATC 6 cut(s) 75, 226, 333, 391, 409, 425
MbiI CCGCTC 1 cut(s) 250
MboI GATC 6 cut(s) 73, 224, 331, 389, 407, 423
MboII GAAGA 1 cut(s) 551
MflI RGATCY 2 cut(s) 407, 423
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 1 cut(s) 541
Mly113I GGCGCC 1 cut(s) 314
MseI TTAA 1 cut(s) 512
MspI CCGG 7 cut(s) 26, 55, 87, 179, 212, 279, 393
MspR9I CCNGG 3 cut(s) 27, 279, 394
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 14, 546
NarI GGCGCC 1 cut(s) 314
NciI CCSGG 3 cut(s) 27, 279, 394
NdeII GATC 6 cut(s) 73, 224, 331, 389, 407, 423
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 3 cut(s) 7, 315, 409
NmeAIII GCCGAG 1 cut(s) 34
PfeI GAWTC 3 cut(s) 20, 30, 173
PflMI CCANNNNNTGG 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 3 cut(s) 53, 113, 339
PluTI GGCGCC 1 cut(s) 317
PspEI GGTNACC 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 7, 315, 409
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 407, 423
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 3 cut(s) 52, 112, 338
Sau3AI GATC 6 cut(s) 73, 224, 331, 389, 407, 423
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 3 cut(s) 27, 279, 394
SduI GDGCHC 1 cut(s) 538
SetI ASST 6 cut(s) 65, 160, 276, 442, 505, 582
SfcI CTRYAG 1 cut(s) 49
SfiI GGCCNNNNNGGCC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 315
Sse9I AATT 1 cut(s) 541
SsiI CCGC 6 cut(s) 145, 170, 250, 337, 340, 592
SspDI GGCGCC 1 cut(s) 313
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 25, 277, 392
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 151, 166, 491
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 72, 388
TasI AATT 1 cut(s) 541
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 3 cut(s) 20, 30, 173
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TseI GCWGC 2 cut(s) 51, 111
TspDTI ATGAA 2 cut(s) 335, 500
TspGWI ACGGA 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 97
VneI GTGCAC 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 574
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.