Rroxscaffold_3G00222820

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
5857316 .. 5857636
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222820.1

Sequence Viewer

Length: 321 bp
ATGAGCTTCGGAGCCCGGACCCGATTCCGGCGTGGAGCTTCGGAGCTTCTCGGACATCCGACAAACAAAACCGGCGAAGCCCGGACCCGATTCGGGCGTGGAGGTTCGGAGCTTCTGGACATCCGACGAACAAAACGGGCGAAGCCCGGACCCGATTCCAGAGTGGAGAGCTTCCCGACATCCGACGAACAAAACCGGCGAAGCCCGGAGGGGTTGGGATTGTGGAGTTGGATGACGTCATCCTTTGGTGGTCCGACGGTGGGACGAGCGGCGGCGGTGGAGGCCGACATCGACGGTGGAGTGGTGGGCTTAGTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.36

Weight (kDa)

11.0

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 3 cut(s) 269, 272, 275
AcyI GRCGYC 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 27, 93, 260
AluBI AGCT 5 cut(s) 6, 38, 46, 112, 171
AluI AGCT 5 cut(s) 6, 38, 46, 112, 171
AoxI GGCC 1 cut(s) 282
AspS9I GGNCC 4 cut(s) 18, 84, 149, 251
AsuC2I CCSGG 4 cut(s) 16, 82, 147, 206
AvaII GGWCC 4 cut(s) 18, 84, 149, 251
BanII GRGCYC 1 cut(s) 16
BcnI CCSGG 4 cut(s) 16, 82, 147, 206
BisI GCNGC 2 cut(s) 270, 273
BlsI GCNGC 2 cut(s) 271, 274
Bme1390I CCNGG 4 cut(s) 16, 82, 147, 206
Bme18I GGWCC 4 cut(s) 18, 84, 149, 251
BmgT120I GGNCC 4 cut(s) 18, 84, 149, 251
BmiI GGNNCC 4 cut(s) 13, 20, 86, 151
BmrFI CCNGG 4 cut(s) 16, 82, 147, 206
BpuMI CCSGG 4 cut(s) 16, 82, 147, 206
BsaHI GRCGYC 1 cut(s) 236
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 93, 260
Bse118I RCCGGY 2 cut(s) 71, 195
BseGI GGATG 5 cut(s) 55, 120, 179, 237, 239
BseLI CCNNNNNNNGG 3 cut(s) 27, 93, 260
BshFI GGCC 1 cut(s) 284
BsiSI CCGG 7 cut(s) 16, 28, 72, 82, 147, 196, 206
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 27, 93, 260
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 16
BspACI CCGC 3 cut(s) 269, 272, 275
BspANI GGCC 1 cut(s) 284
BspLI GGNNCC 4 cut(s) 13, 20, 86, 151
BsrBI CCGCTC 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 71, 195
BssAI RCCGGY 2 cut(s) 71, 195
BssNI GRCGYC 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 259, 296
BstACI GRCGYC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 310, 318
BstF5I GGATG 5 cut(s) 55, 120, 179, 237, 239
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSCI CCNGG 4 cut(s) 14, 80, 145, 204
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 5 cut(s) 55, 120, 179, 237, 239
Cfr10I RCCGGY 2 cut(s) 71, 195
Cfr13I GGNCC 4 cut(s) 18, 84, 149, 251
DdeI CTNAG 2 cut(s) 310, 318
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 4 cut(s) 18, 84, 149, 251
EcoT38I GRGCYC 1 cut(s) 16
FaqI GGGAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 270, 273
FokI GGATG 5 cut(s) 42, 107, 166, 226, 244
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 270, 273
GluI GCNGC 2 cut(s) 270, 273
HaeIII GGCC 1 cut(s) 284
HapII CCGG 7 cut(s) 16, 28, 72, 82, 147, 196, 206
Hin1I GRCGYC 1 cut(s) 236
HinfI GANTC 3 cut(s) 24, 90, 155
HpaII CCGG 7 cut(s) 16, 28, 72, 82, 147, 196, 206
Hpy188I TCNGA 8 cut(s) 11, 43, 53, 60, 109, 125, 184, 255
Hpy188III TCNNGA 3 cut(s) 116, 159, 175
Hpy99I CGWCG 4 cut(s) 129, 188, 259, 296
HpyCH4III ACNGT 2 cut(s) 259, 296
HpyCH4IV ACGT 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 310, 318
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 11, 35, 43, 109
LpnPI CCDG 9 cut(s) 29, 41, 85, 95, 101, 160, 172, 209, 219
MaeII ACGT 1 cut(s) 236
MbiI CCGCTC 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 16
MmeI TCCRAC 5 cut(s) 83, 148, 207, 209, 278
MnlI CCTC 3 cut(s) 95, 202, 274
MspI CCGG 7 cut(s) 16, 28, 72, 82, 147, 196, 206
MspR9I CCNGG 4 cut(s) 16, 82, 147, 206
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 4 cut(s) 16, 82, 147, 206
NlaIV GGNNCC 4 cut(s) 13, 20, 86, 151
PfeI GAWTC 3 cut(s) 24, 90, 155
PkrI GCNGC 2 cut(s) 271, 274
PspN4I GGNNCC 4 cut(s) 13, 20, 86, 151
PspPI GGNCC 4 cut(s) 18, 84, 149, 251
SatI GCNGC 2 cut(s) 270, 273
Sau96I GGNCC 4 cut(s) 18, 84, 149, 251
ScrFI CCNGG 4 cut(s) 16, 82, 147, 206
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 8, 40, 48, 106, 114, 173, 239
SinI GGWCC 4 cut(s) 18, 84, 149, 251
SsiI CCGC 3 cut(s) 269, 272, 275
StyD4I CCNGG 4 cut(s) 14, 80, 145, 204
TaaI ACNGT 2 cut(s) 259, 296
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 291
TauI GCSGC 2 cut(s) 272, 275
TfiI GAWTC 3 cut(s) 24, 90, 155
VpaK11BI GGWCC 4 cut(s) 18, 84, 149, 251
ZraI GACGTC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.