RchiOBHm_Chr1g0362441

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
54083905 .. 54091831
7927 bp
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UTR
Exon/CDS
Intron
PRQ58725

Sequence Viewer

Length: 2169 bp
ATGGAAATAGAGAGGACTAGCTCAGATCCTCAGTCTAGTCCAATTTCAAAAATGACTCGCTCGCAAGATGAGGAAGACCCCGCTAAATCAAGGTGCTATATGAGTATATCAGAGAAGATAACAAGGCTACTTCAATGCCTGTTTTGTTCATGGTTTGCAACATGTTACGACGGAGTATGCACGACAATACGTGTGATGCTAGAGATACTTGATAACTCATGGCGGAAGGTCCGAAGGAACGTAACGATACTACGTGATAACTTATGGTGGAAGGTTGATAACTTAAGGTGGAAGGTCCGAAGGAACGTGAGGATACTACCTGATAACTTATGGTGGAAGGTCCGAAGCAACATAGCAAGGTGGAAGGTCCGAAGTTTATGGCGGAATGCAACAAGTGTAATAAGCTCATGGTGGGATACAATATTTGTAACATCTTGCGTGATTGCAGTCTCACAAGATCCTTTATTTTTTTATATTCCAACTATAAATGAGGAAGAAAAGTGCCTCGAAATGGACACCAAGTTGATGATTGTGTTACTCGTTTTGCGATCACTCACGGACATCATTTTCATATGGGACATTAAAAGTCAAAATTATAAGGCTGCAGCAATAGCTAAGATATGGCGAGCAGTTGCAACAGACTTTTTTGCTATACTTCCCGTCCCACAAGTGTTAATAATAGTCGTCCTTTACAGACATCAAGAATTGGGATATCTGAATGTGTTTCTTTTCATCCAATATGTACCAAGGATTTATCGACTTAGTCAATCGTTTGACAATCTTAAGCGGAGAAGGGACACCGGATTATGGGTCAAAGTTGCATTCAATTTTTTTCTATACATCCTTGCTTGTCATATACTTGGAGCCTCGTGGTTTTTCTTTTCTGTTCAACGAGAGATGTTTTGTTGGCGCCAAACTTGTGTAGAACAGAAGACATGCAGAAGTAATATCAAGTGCAACGAAAATAGTTCGAGAAATGTCACAAAACTAGATCAACTTTGTCCAATGAATCCACCAAATTCTGCCATATTTGATTTTGGGATATTTGTTAATACTCTGGGAACTAGTCGCAGAACACCAATAAACTTCTCAACGAAGTTATCATACTCTTTCTGGTGGGGAGTGCGAAATATAAGTAATTTTGGCACAAATCTGGAAACAAGTACTTATTTGGGGGAAGTTTGGTTTGCAACTCTAATTTCGGTTATCGGCTTGCTACTCTTTGTATATCTCATTGGAAATAATGTTCAGACATTCATGCAAATGAAAACTATGAAAGAGGAGGAGGAAGCTAAAAAGATGAGGCAAGAAGCTGAAAGGATAAGGCAAGAGCTTCTCCATCAAGAGAGACGCATAAATTCGTGGATGCACCGACTTAATTTCCCTGGGTTTTTGAGGGAAGAGGTCGAGAGAAAAATTAAAGGAAAGTTGCAAGAAAACAAAGAGGCTAATCTTGCTAATGTATTGACTCTATTATCATTTATGGATTCGGACCTCCACAGAGATGTAAAGTGGCTGATGCTGGAAAATGTGGCAGTTATTAAAGATATGGGTCGGCGTGTGTTGTCTGAAATTTCTGAGTTGATGGAGATAGTGGAGTACCCCGAAAATACTTTGATTGTTGAAAGGGCCGGACCCTTGGATCGCATGGTTGTCATTACAGAAGGGACTATGGGGGTCTACAAGACTAGCACGAACCCTTCTCCATCAGCAATCATTCAAGGGTCTTTCGACCAAGTGAATGTCTACGGACAGATACAACTAGTGAGTTGGGCACTCTCAACCAACGGAAATCTCGACAGCCTTCCTATCTCAGAAGAAACCGTCAAGTGTCATACCAAAGTAGAAGGATTTGTTCTCACAGCCAGTGACTTGAAGAAGGTCCTCTCTAAATACGGCGTAATCCAAGACAATGATTCTGATCAAGATCATGTGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGTATGGGATCAGCAATCCTTGTAGCAACAGATCAAGATCATGGGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGCCTGAGATCAGCAATTCTTGTAGCAACAACAGCCTCTCGTTTCCGGCGACGCCTTCGAAGAGCGAAGCCTGCATTACATTTAGATTTCGATCCCTCTAGCTACAAAGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

722

Amino Acids

83.53

Weight (kDa)

8.76

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 909
AccI GTMKAC 2 cut(s) 1680, 1746
AciI CCGC 4 cut(s) 81, 223, 382, 787
AclWI GGATC 5 cut(s) 20, 452, 1650, 1987, 2138
AcsI RAATTY 3 cut(s) 1018, 1357, 1572
AcyI GRCGYC 2 cut(s) 910, 2104
AfaI GTAC 3 cut(s) 744, 1165, 1601
AfiI CCNNNNNNNGG 2 cut(s) 511, 807
AflII CTTAAG 2 cut(s) 283, 782
AflIII ACRYGT 2 cut(s) 161, 190
AgsI TTSAA 7 cut(s) 48, 134, 826, 890, 1625, 1721, 1876
AhlI ACTAGT 2 cut(s) 1064, 1762
AjnI CCWGG 1 cut(s) 1384
AloI GAACNNNNNNTCC 2 cut(s) 1230, 1262
AluBI AGCT 7 cut(s) 21, 405, 614, 1292, 1313, 1333, 2154
AluI AGCT 7 cut(s) 21, 405, 614, 1292, 1313, 1333, 2154
Alw26I GTCTC 2 cut(s) 454, 1342
AlwI GGATC 5 cut(s) 20, 452, 1650, 1987, 2138
AoxI GGCC 1 cut(s) 1629
ApeKI GCWGC 2 cut(s) 602, 605
ApoI RAATTY 3 cut(s) 1018, 1357, 1572
AspLEI GCGC 1 cut(s) 912
AspS9I GGNCC 8 cut(s) 229, 295, 340, 367, 1492, 1629, 1634, 1882
AsuII TTCGAA 1 cut(s) 2110
AvaII GGWCC 7 cut(s) 229, 295, 340, 367, 1492, 1634, 1882
BaeGI GKGCMC 1 cut(s) 1777
BanI GGYRCC 1 cut(s) 909
BarI GAAGNNNNNNTAC 2 cut(s) 1088, 1120
BauI CACGAG 1 cut(s) 868
BbsI GAAGAC 2 cut(s) 81, 938
BbvI GCAGC 2 cut(s) 589, 617
BccI CCATC 3 cut(s) 1347, 1579, 1714
BceAI ACGGC 1 cut(s) 1912
BciT130I CCWGG 1 cut(s) 1386
BciVI GTATCC 2 cut(s) 306, 409
BclI TGATCA 1 cut(s) 1921
BcoDI GTCTC 2 cut(s) 454, 1342
BcuI ACTAGT 2 cut(s) 1064, 1762
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 913
BfrI CTTAAG 2 cut(s) 283, 782
BfuI GTATCC 2 cut(s) 306, 409
BisI GCNGC 2 cut(s) 603, 606
BlsI GCNGC 2 cut(s) 604, 607
BmcAI AGTACT 1 cut(s) 1165
Bme1390I CCNGG 1 cut(s) 1386
Bme18I GGWCC 7 cut(s) 229, 295, 340, 367, 1492, 1634, 1882
BmgT120I GGNCC 8 cut(s) 229, 295, 340, 367, 1492, 1629, 1634, 1882
BmiI GGNNCC 3 cut(s) 865, 911, 1636
BmrFI CCNGG 1 cut(s) 1386
BmsI GCATC 3 cut(s) 186, 1356, 1509
BpiI GAAGAC 2 cut(s) 81, 938
Bpu14I TTCGAA 1 cut(s) 2110
BsaAI YACGTR 2 cut(s) 191, 254
BsaBI GATNNNNATC 4 cut(s) 1920, 1926, 2007, 2142
BsaHI GRCGYC 2 cut(s) 910, 2104
BsaJI CCNNGG 4 cut(s) 746, 1384, 1385, 1638
BsaWI WCCGGW 1 cut(s) 800
Bsc4I CCNNNNNNNGG 2 cut(s) 511, 807
Bse1I ACTGG 1 cut(s) 1866
Bse8I GATNNNNATC 4 cut(s) 1920, 1926, 2007, 2142
BseBI CCWGG 1 cut(s) 1386
BseDI CCNNGG 4 cut(s) 746, 1384, 1385, 1638
BseGI GGATG 3 cut(s) 732, 840, 1371
BseJI GATNNNNATC 4 cut(s) 1920, 1926, 2007, 2142
BseLI CCNNNNNNNGG 2 cut(s) 511, 807
BseMII CTCAG 5 cut(s) 36, 44, 1569, 1827, 2048
BseNI ACTGG 1 cut(s) 1866
BseRI GAGGAG 2 cut(s) 1295, 1298
BseSI GKGCMC 1 cut(s) 1777
BseXI GCAGC 2 cut(s) 589, 617
BshFI GGCC 1 cut(s) 1631
BshNI GGYRCC 1 cut(s) 909
BsiSI CCGG 3 cut(s) 801, 1632, 2098
BslFI GGGAC 4 cut(s) 590, 647, 809, 1681
BslI CCNNNNNNNGG 2 cut(s) 511, 807
BsmAI GTCTC 2 cut(s) 454, 1342
BsmBI CGTCTC 1 cut(s) 1342
BsmFI GGGAC 4 cut(s) 590, 647, 809, 1681
BsmI GAATGC 2 cut(s) 391, 821
BsnI GGCC 1 cut(s) 1631
Bsp119I TTCGAA 1 cut(s) 2110
Bsp1286I GDGCHC 1 cut(s) 1777
BspACI CCGC 4 cut(s) 81, 223, 382, 787
BspANI GGCC 1 cut(s) 1631
BspCNI CTCAG 5 cut(s) 35, 43, 1570, 1826, 2049
BspLI GGNNCC 3 cut(s) 865, 911, 1636
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 5 cut(s) 20, 452, 1650, 1987, 2138
BspQI GCTCTTC 1 cut(s) 2107
BspT104I TTCGAA 1 cut(s) 2110
BspT107I GGYRCC 1 cut(s) 909
BspTI CTTAAG 2 cut(s) 283, 782
BsrI ACTGG 1 cut(s) 1866
BssECI CCNNGG 4 cut(s) 746, 1384, 1385, 1638
BssNI GRCGYC 2 cut(s) 910, 2104
BssSI CACGAG 1 cut(s) 868
BssT1I CCWWGG 2 cut(s) 746, 1638
Bst2BI CACGAG 1 cut(s) 868
Bst2UI CCWGG 1 cut(s) 1386
Bst4CI ACNGT 1 cut(s) 1825
Bst6I CTCTTC 2 cut(s) 1395, 2107
BstACI GRCGYC 2 cut(s) 910, 2104
BstAFI CTTAAG 2 cut(s) 283, 782
BstBAI YACGTR 2 cut(s) 191, 254
BstBI TTCGAA 1 cut(s) 2110
BstC8I GCNNGC 4 cut(s) 62, 627, 1214, 2124
BstDEI CTNAG 7 cut(s) 22, 30, 615, 761, 1578, 1813, 2057
BstF5I GGATG 3 cut(s) 732, 840, 1371
BstH2I RGCGCY 1 cut(s) 913
BstHHI GCGC 1 cut(s) 912
BstMAI GTCTC 2 cut(s) 454, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 611, 1454, 2084, 2123
BstNI CCWGG 1 cut(s) 1386
BstNSI RCATGY 2 cut(s) 165, 939
BstSCI CCNGG 1 cut(s) 1384
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 1777
BstV1I GCAGC 2 cut(s) 589, 617
BstV2I GAAGAC 2 cut(s) 81, 938
BstX2I RGATCY 2 cut(s) 25, 457
BstYI RGATCY 2 cut(s) 25, 457
BsuI GTATCC 2 cut(s) 306, 409
BsuRI GGCC 1 cut(s) 1631
BtsCI GGATG 3 cut(s) 732, 840, 1371
BtsIMutI CAGTG 1 cut(s) 1873
Cac8I GCNNGC 4 cut(s) 62, 627, 1214, 2124
CfoI GCGC 1 cut(s) 912
Cfr13I GGNCC 8 cut(s) 229, 295, 340, 367, 1492, 1629, 1634, 1882
CseI GACGC 2 cut(s) 1359, 2112
Csp6I GTAC 3 cut(s) 743, 1164, 1600
CviAII CATG 9 cut(s) 150, 162, 219, 408, 936, 1258, 1648, 1931, 2012
CviQI GTAC 3 cut(s) 743, 1164, 1600
DdeI CTNAG 7 cut(s) 22, 30, 615, 761, 1578, 1813, 2057
DinI GGCGCC 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 1395, 2107
EarI CTCTTC 2 cut(s) 1395, 2107
EciI GGCGGA 2 cut(s) 238, 397
Eco130I CCWWGG 2 cut(s) 746, 1638
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 7 cut(s) 229, 295, 340, 367, 1492, 1634, 1882
EcoO109I RGGNCCY 1 cut(s) 1882
EcoRII CCWGG 1 cut(s) 1384
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 746, 1638
EgeI GGCGCC 1 cut(s) 911
EheI GGCGCC 1 cut(s) 911
ErhI CCWWGG 2 cut(s) 746, 1638
Esp3I CGTCTC 1 cut(s) 1342
FaeI CATG 9 cut(s) 153, 165, 222, 411, 939, 1261, 1651, 1934, 2015
FaqI GGGAC 4 cut(s) 590, 647, 809, 1681
FatI CATG 9 cut(s) 149, 161, 218, 407, 935, 1257, 1647, 1930, 2011
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 572
FbaI TGATCA 1 cut(s) 1921
FblI GTMKAC 2 cut(s) 1680, 1746
Fnu4HI GCNGC 2 cut(s) 603, 606
FokI GGATG 3 cut(s) 719, 827, 1378
Fsp4HI GCNGC 2 cut(s) 603, 606
GlaI GCGC 1 cut(s) 911
GluI GCNGC 2 cut(s) 603, 606
HaeII RGCGCY 1 cut(s) 913
HaeIII GGCC 1 cut(s) 1631
HapII CCGG 3 cut(s) 801, 1632, 2098
HgaI GACGC 2 cut(s) 1359, 2112
HhaI GCGC 1 cut(s) 912
Hin1I GRCGYC 2 cut(s) 910, 2104
Hin1II CATG 9 cut(s) 153, 165, 222, 411, 939, 1261, 1651, 1934, 2015
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HinfI GANTC 5 cut(s) 55, 1009, 1468, 1487, 1916
HpaII CCGG 3 cut(s) 801, 1632, 2098
Hpy166II GTNNAC 2 cut(s) 1681, 1747
Hpy188III TCNNGA 8 cut(s) 701, 972, 1154, 1343, 1408, 1796, 1925, 2006
Hpy8I GTNNAC 2 cut(s) 1681, 1747
Hpy99I CGWCG 2 cut(s) 173, 2106
HpyCH4III ACNGT 1 cut(s) 1825
HpyCH4IV ACGT 4 cut(s) 190, 240, 253, 306
HpyF10VI GCNNNNNNNGC 4 cut(s) 611, 1454, 2084, 2123
HpyF3I CTNAG 7 cut(s) 22, 30, 615, 761, 1578, 1813, 2057
HpySE526I ACGT 4 cut(s) 190, 240, 253, 306
Hsp92I GRCGYC 2 cut(s) 910, 2104
Hsp92II CATG 9 cut(s) 153, 165, 222, 411, 939, 1261, 1651, 1934, 2015
HspAI GCGC 1 cut(s) 910
KasI GGCGCC 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 1921
LguI GCTCTTC 1 cut(s) 2107
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 2 cut(s) 589, 617
LweI GCATC 3 cut(s) 186, 1356, 1509
MaeII ACGT 4 cut(s) 190, 240, 253, 306
MaeIII GTNAC 6 cut(s) 164, 241, 427, 534, 979, 1868
MflI RGATCY 2 cut(s) 25, 457
MhlI GDGCHC 1 cut(s) 1777
Mly113I GGCGCC 1 cut(s) 910
MlyI GAGTC 2 cut(s) 49, 1462
MmeI TCCRAC 1 cut(s) 503
MseI TTAA 8 cut(s) 284, 582, 674, 783, 1050, 1377, 1419, 1542
MslI CAYNNNNRTG 2 cut(s) 1262, 1503
MspCI CTTAAG 2 cut(s) 283, 782
MspI CCGG 3 cut(s) 801, 1632, 2098
MspR9I CCNGG 1 cut(s) 1386
Mva1269I GAATGC 2 cut(s) 391, 821
MvaI CCWGG 1 cut(s) 1386
MwoI GCNNNNNNNGC 4 cut(s) 611, 1454, 2084, 2123
NarI GGCGCC 1 cut(s) 910
NdeI CATATG 1 cut(s) 572
NlaIII CATG 9 cut(s) 153, 165, 222, 411, 939, 1261, 1651, 1934, 2015
NlaIV GGNNCC 3 cut(s) 865, 911, 1636
NmuCI GTSAC 2 cut(s) 979, 1868
NspI RCATGY 2 cut(s) 165, 939
NspV TTCGAA 1 cut(s) 2110
PasI CCCWGGG 1 cut(s) 1385
PciI ACATGT 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 2107
PcsI WCGNNNNNNNCGW 2 cut(s) 1794, 2098
PctI GAATGC 2 cut(s) 391, 821
PfeI GAWTC 3 cut(s) 1009, 1487, 1916
PflFI GACNNNGTC 1 cut(s) 762
PkrI GCNGC 2 cut(s) 604, 607
PleI GAGTC 2 cut(s) 49, 1462
PluTI GGCGCC 1 cut(s) 913
PpsI GAGTC 2 cut(s) 49, 1462
Ppu21I YACGTR 2 cut(s) 191, 254
PpuMI RGGWCCY 1 cut(s) 1882
PscI ACATGT 1 cut(s) 161
PsiI TTATAA 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 1882
Psp6I CCWGG 1 cut(s) 1384
PspGI CCWGG 1 cut(s) 1384
PspN4I GGNNCC 3 cut(s) 865, 911, 1636
PspPI GGNCC 8 cut(s) 229, 295, 340, 367, 1492, 1629, 1634, 1882
PspPPI RGGWCCY 1 cut(s) 1882
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 25, 457
PsyI GACNNNGTC 1 cut(s) 762
RsaI GTAC 3 cut(s) 744, 1165, 1601
RsaNI GTAC 3 cut(s) 743, 1164, 1600
RseI CAYNNNNRTG 2 cut(s) 1262, 1503
SapI GCTCTTC 1 cut(s) 2107
SaqAI TTAA 8 cut(s) 284, 582, 674, 783, 1050, 1377, 1419, 1542
SatI GCNGC 2 cut(s) 603, 606
Sau96I GGNCC 8 cut(s) 229, 295, 340, 367, 1492, 1629, 1634, 1882
ScaI AGTACT 1 cut(s) 1165
SchI GAGTC 2 cut(s) 49, 1462
ScrFI CCNGG 1 cut(s) 1386
SduI GDGCHC 1 cut(s) 1777
SfaNI GCATC 3 cut(s) 186, 1356, 1509
SfcI CTRYAG 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 911
SfuI TTCGAA 1 cut(s) 2110
SinI GGWCC 7 cut(s) 229, 295, 340, 367, 1492, 1634, 1882
SmiMI CAYNNNNRTG 2 cut(s) 1262, 1503
SmlI CTYRAG 2 cut(s) 283, 782
SmoI CTYRAG 2 cut(s) 283, 782
SpeI ACTAGT 2 cut(s) 1064, 1762
SsiI CCGC 4 cut(s) 81, 223, 382, 787
SspDI GGCGCC 1 cut(s) 909
SspI AATATT 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 1384
StyI CCWWGG 2 cut(s) 746, 1638
TaaI ACNGT 1 cut(s) 1825
TaiI ACGT 4 cut(s) 193, 243, 256, 309
TaqI TCGA 8 cut(s) 507, 757, 971, 1407, 1731, 1797, 2110, 2142
TatI WGTACW 1 cut(s) 1163
TfiI GAWTC 3 cut(s) 1009, 1487, 1916
Tru1I TTAA 8 cut(s) 284, 582, 674, 783, 1050, 1377, 1419, 1542
Tru9I TTAA 8 cut(s) 284, 582, 674, 783, 1050, 1377, 1419, 1542
TscAI CASTG 1 cut(s) 1873
TseFI GTSAC 2 cut(s) 979, 1868
TseI GCWGC 2 cut(s) 602, 605
Tsp45I GTSAC 2 cut(s) 979, 1868
TspDTI ATGAA 7 cut(s) 138, 559, 721, 1022, 1246, 1280, 1289
TspGWI ACGGA 4 cut(s) 186, 572, 1764, 1803
TspRI CASTG 1 cut(s) 1873
Tth111I GACNNNGTC 1 cut(s) 762
Vha464I CTTAAG 2 cut(s) 283, 782
VpaK11BI GGWCC 7 cut(s) 229, 295, 340, 367, 1492, 1634, 1882
XapI RAATTY 3 cut(s) 1018, 1357, 1572
XceI RCATGY 2 cut(s) 165, 939
XmiI GTMKAC 2 cut(s) 1680, 1746
ZrmI AGTACT 1 cut(s) 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.