Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Reverse (-)

13513664 .. 13522671

Gene Structure 9008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGAAATAGAGAGGACTAGCTCAGGTCCTCAGTCTACTCCAATTTCAAAAATGACTCGCTCGCAAGATGAGGAAGACCCCGTTGAATCAAGACCACGTGTCAGGTGCTATACGAGTATATCAGACAAGATAACAAGCCTACTTCAATGCCTATTTTGTTCATGGACAATACGTGTGATGCTAGAGATACTTGATAACTTATGGCGGAAGGTCCGAAGGAACGTAAGGATACTACTTGATAACTTTTGGTGGAAGGTTGATGACTTATGGTGGAAGGTCCGAAGGAACACGAGGATTCTACCTGATAACTTATGGTGGAAGGTCCGAAGCAACATAGCAAGGTGGAAGGTCCGAAGTTTATGGCGGAATACAATAAGTGTAATAAGCTCATGGTGGGATACAATATTTGTAACATCTTGTGTGATTGCAGTTTCACAAGATCCTTTATTTTTTTATATTCCAACTATAAATGAGGAAAAAAAGTGCCTCGAAATGGACACCAAGTTGATGATTGTATCACTCGTTTTGCGATCATTGACGGACATCATTTTCATATGGGACATTAAAAATCAAAATTATAAGGCTGCGGCAATAGCTAAGATATGGCGTGCAGTTGCAACAGACTTTTTTGCTATACTTCCCGTCCCACAAGTGTTAATAATAGTCGTCCTTTACAAACATCGAGACTTGGGATATCTGAATGTGTTTCTTTTCATCCAATATGCACCAAGGATTTATCGACTTAGTCAATCGTTTGACAATCTTAAGCGGAGAAGGGACACCGGATTATGGGTCAAAGTTGCATTCAATTTTTTTCTATACATCCTTGCTTGTCATATACTTGGAGCCTCGTGGTTTTTCTTTTCTGTTCAACGAGAGATGTTATGTTGGCACCGGATTTGTGTAAAACAGAATACATGCGGAAGTAATTTCAAGTGCAACAAAAATAGTTCGAGAAATGTCAAAAAACTAGTTCAACTTTGTCCAATCAATCCAGCAGATCCTACCGTATTTAATTTTGGGATATTTGATAATCCTCTGGGAACTAGTAGCAGAACACCAATAAACTTCTCGACGAAGTTATCTTACTCTTTTTGGTGGGGAGTGCGAAATATAAGTAATTTTGGCACAAATCTGGTGACAAGTACTTATTTGGGGGAAGTTTGGTTTGCAAGTCTAATTTCGGTCATCGGCTTGCTACTCTTTGTATATCTCATTGGAAATAATGTTCAGACATTCATGCAAATGAAAACTATGAAAGAGGAGGAGGAAGCTAAAAAGATGAGGCAAGAAGCTGAAAGAATAAGGCAAGAGCTTCTCCATCAAGAGAGACGCATAAATTCGTGGATGCACCGACTTAATTTCCCTGGGCTTTTGAGGGAAGAAGTCGAGAGAAAAATTAAAGAGAAGTTGCAAGAAAACAAAGAGGCTAATCTTGCTAATGTATTGACTCTATTATCATTTATGGATTCGGACCTCCACAGAGATGTAAAGTGGCTGATACTGGAAAAGGTAAGTCTTCAACCCATCTCTCTCCGCGTGTTCACTGTTGAGTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

521

Amino Acids

61.5

Weight (kDa)

9.6

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	1539
AciI	CCGC	6 cut(s)	205, 364, 587, 769, 921, 1537
AclWI	GGATC	2 cut(s)	434, 995
AcsI	RAATTY	1 cut(s)	1339
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	1147
AfiI	CCNNNNNNNGG	2 cut(s)	493, 789
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	2 cut(s)	97, 172
AgsI	TTSAA	8 cut(s)	48, 86, 146, 808, 872, 934, 977, 1523
AhdI	GACNNNNNGTC	1 cut(s)	98
AhlI	ACTAGT	2 cut(s)	970, 1046
AjnI	CCWGG	1 cut(s)	1366
AloI	GAACNNNNNNTCC	2 cut(s)	1212, 1244
AluBI	AGCT	6 cut(s)	21, 387, 596, 1274, 1295, 1315
AluI	AGCT	6 cut(s)	21, 387, 596, 1274, 1295, 1315
Alw26I	GTCTC	2 cut(s)	678, 1324
AlwI	GGATC	2 cut(s)	434, 995
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	1339
AspS9I	GGNCC	6 cut(s)	26, 211, 277, 322, 349, 1474
AsuHPI	GGTGA	1 cut(s)	1150
AvaII	GGWCC	6 cut(s)	26, 211, 277, 322, 349, 1474
BanI	GGYRCC	1 cut(s)	891
BarI	GAAGNNNNNNTAC	2 cut(s)	1070, 1102
BauI	CACGAG	2 cut(s)	289, 850
BbrPI	CACGTG	1 cut(s)	98
BbsI	GAAGAC	2 cut(s)	81, 1511
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	2 cut(s)	1329, 1535
BciT130I	CCWGG	1 cut(s)	1368
BciVI	GTATCC	2 cut(s)	222, 391
BcoDI	GTCTC	2 cut(s)	678, 1324
BcuI	ACTAGT	2 cut(s)	970, 1046
BfaI	CTAG	4 cut(s)	18, 182, 971, 1047
BfrI	CTTAAG	1 cut(s)	764
BfuI	GTATCC	2 cut(s)	222, 391
BisI	GCNGC	2 cut(s)	585, 588
BlsI	GCNGC	2 cut(s)	586, 589
BmcAI	AGTACT	1 cut(s)	1147
Bme1390I	CCNGG	1 cut(s)	1368
Bme18I	GGWCC	6 cut(s)	26, 211, 277, 322, 349, 1474
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	6 cut(s)	26, 211, 277, 322, 349, 1474
BmiI	GGNNCC	2 cut(s)	847, 893
BmrFI	CCNGG	1 cut(s)	1368
BmsI	GCATC	2 cut(s)	168, 1338
BpiI	GAAGAC	2 cut(s)	81, 1511
Bpu10I	CCTNAGC	1 cut(s)	22
BsaAI	YACGTR	2 cut(s)	98, 173
BsaJI	CCNNGG	3 cut(s)	728, 1366, 1367
BsaWI	WCCGGW	2 cut(s)	782, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 789
Bse1I	ACTGG	1 cut(s)	1509
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	3 cut(s)	728, 1366, 1367
BseGI	GGATG	3 cut(s)	714, 822, 1353
BseLI	CCNNNNNNNGG	2 cut(s)	493, 789
BseMII	CTCAG	2 cut(s)	36, 44
BseNI	ACTGG	1 cut(s)	1509
BseRI	GAGGAG	2 cut(s)	1277, 1280
BseXI	GCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	1539
BshNI	GGYRCC	1 cut(s)	891
BsiSI	CCGG	2 cut(s)	783, 895
BslFI	GGGAC	3 cut(s)	572, 629, 791
BslI	CCNNNNNNNGG	2 cut(s)	493, 789
BsmAI	GTCTC	2 cut(s)	678, 1324
BsmBI	CGTCTC	1 cut(s)	1324
BsmFI	GGGAC	3 cut(s)	572, 629, 791
BsmI	GAATGC	1 cut(s)	803
Bsp143I	GATC	3 cut(s)	439, 530, 1000
BspACI	CCGC	6 cut(s)	205, 364, 587, 769, 921, 1537
BspCNI	CTCAG	2 cut(s)	35, 43
BspFNI	CGCG	1 cut(s)	1539
BspLI	GGNNCC	2 cut(s)	847, 893
BspPI	GGATC	2 cut(s)	434, 995
BspT107I	GGYRCC	1 cut(s)	891
BspTI	CTTAAG	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	1509
BssECI	CCNNGG	3 cut(s)	728, 1366, 1367
BssMI	GATC	3 cut(s)	439, 530, 1000
BssSI	CACGAG	2 cut(s)	289, 850
BssT1I	CCWWGG	1 cut(s)	728
Bst2BI	CACGAG	2 cut(s)	289, 850
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	2 cut(s)	1009, 1549
BstAFI	CTTAAG	1 cut(s)	764
BstBAI	YACGTR	2 cut(s)	98, 173
BstC8I	GCNNGC	3 cut(s)	62, 609, 1196
BstDEI	CTNAG	4 cut(s)	22, 30, 597, 743
BstF5I	GGATG	3 cut(s)	714, 822, 1353
BstFNI	CGCG	1 cut(s)	1539
BstKTI	GATC	3 cut(s)	442, 533, 1003
BstMAI	GTCTC	2 cut(s)	678, 1324
BstMBI	GATC	3 cut(s)	439, 530, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 1436
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	1366
BstUI	CGCG	1 cut(s)	1539
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	2 cut(s)	81, 1511
BstX2I	RGATCY	2 cut(s)	439, 1000
BstYI	RGATCY	2 cut(s)	439, 1000
BsuI	GTATCC	2 cut(s)	222, 391
BtsCI	GGATG	3 cut(s)	714, 822, 1353
BtsIMutI	CAGTG	1 cut(s)	1545
Cac8I	GCNNGC	3 cut(s)	62, 609, 1196
Cfr13I	GGNCC	6 cut(s)	26, 211, 277, 322, 349, 1474
CseI	GACGC	1 cut(s)	1341
Csp6I	GTAC	1 cut(s)	1146
CviAII	CATG	4 cut(s)	162, 390, 918, 1240
CviQI	GTAC	1 cut(s)	1146
DdeI	CTNAG	4 cut(s)	22, 30, 597, 743
DpnI	GATC	3 cut(s)	441, 532, 1002
DpnII	GATC	3 cut(s)	439, 530, 1000
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	220, 379
Eco130I	CCWWGG	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	695
Eco47I	GGWCC	6 cut(s)	26, 211, 277, 322, 349, 1474
Eco72I	CACGTG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	1366
EcoRV	GATATC	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
Esp3I	CGTCTC	1 cut(s)	1324
FaeI	CATG	4 cut(s)	165, 393, 921, 1243
FaqI	GGGAC	3 cut(s)	572, 629, 791
FatI	CATG	4 cut(s)	161, 389, 917, 1239
FauNDI	CATATG	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	585, 588
FokI	GGATG	3 cut(s)	701, 809, 1360
Fsp4HI	GCNGC	2 cut(s)	585, 588
FspBI	CTAG	4 cut(s)	18, 182, 971, 1047
GluI	GCNGC	2 cut(s)	585, 588
HapII	CCGG	2 cut(s)	783, 895
HgaI	GACGC	1 cut(s)	1341
Hin1II	CATG	4 cut(s)	165, 393, 921, 1243
HinfI	GANTC	5 cut(s)	55, 86, 295, 1450, 1469
HpaII	CCGG	2 cut(s)	783, 895
HphI	GGTGA	1 cut(s)	1150
Hpy166II	GTNNAC	2 cut(s)	36, 1545
Hpy188I	TCNGA	8 cut(s)	124, 215, 281, 326, 353, 699, 1233, 1474
Hpy188III	TCNNGA	6 cut(s)	90, 683, 954, 1072, 1325, 1390
Hpy8I	GTNNAC	2 cut(s)	36, 1545
Hpy99I	CGWCG	1 cut(s)	1078
HpyAV	CCTTC	8 cut(s)	202, 210, 247, 268, 276, 313, 340, 768
HpyCH4III	ACNGT	2 cut(s)	1009, 1549
HpyCH4IV	ACGT	3 cut(s)	97, 172, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 1436
HpyF3I	CTNAG	4 cut(s)	22, 30, 597, 743
HpySE526I	ACGT	3 cut(s)	97, 172, 222
Hsp92II	CATG	4 cut(s)	165, 393, 921, 1243
Kzo9I	GATC	3 cut(s)	439, 530, 1000
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	2 cut(s)	168, 1338
MaeI	CTAG	4 cut(s)	18, 182, 971, 1047
MaeII	ACGT	3 cut(s)	97, 172, 222
MaeIII	GTNAC	2 cut(s)	409, 1138
MalI	GATC	3 cut(s)	441, 532, 1002
MboI	GATC	3 cut(s)	439, 530, 1000
MboII	GAAGA	3 cut(s)	86, 1394, 1511
MflI	RGATCY	2 cut(s)	439, 1000
MlyI	GAGTC	2 cut(s)	49, 1444
MmeI	TCCRAC	1 cut(s)	485
MseI	TTAA	7 cut(s)	564, 656, 765, 1014, 1359, 1401, 1561
MslI	CAYNNNNRTG	2 cut(s)	1244, 1485
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	2 cut(s)	783, 895
MspR9I	CCNGG	1 cut(s)	1368
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	1 cut(s)	1539
MwoI	GCNNNNNNNGC	2 cut(s)	593, 1436
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	3 cut(s)	439, 530, 1000
NlaIII	CATG	4 cut(s)	165, 393, 921, 1243
NlaIV	GGNNCC	2 cut(s)	847, 893
NmuCI	GTSAC	1 cut(s)	1138
NspI	RCATGY	1 cut(s)	921
PasI	CCCWGGG	1 cut(s)	1367
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	86, 295, 1469
PflFI	GACNNNGTC	1 cut(s)	744
PkrI	GCNGC	2 cut(s)	586, 589
PleI	GAGTC	2 cut(s)	49, 1444
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
PpsI	GAGTC	2 cut(s)	49, 1444
Ppu21I	YACGTR	2 cut(s)	98, 173
PpuMI	RGGWCCY	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	1366
PspCI	CACGTG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	2 cut(s)	847, 893
PspPI	GGNCC	6 cut(s)	26, 211, 277, 322, 349, 1474
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	439, 1000
PsyI	GACNNNGTC	1 cut(s)	744
RsaI	GTAC	1 cut(s)	1147
RsaNI	GTAC	1 cut(s)	1146
RseI	CAYNNNNRTG	2 cut(s)	1244, 1485
SaqAI	TTAA	7 cut(s)	564, 656, 765, 1014, 1359, 1401, 1561
SatI	GCNGC	2 cut(s)	585, 588
Sau3AI	GATC	3 cut(s)	439, 530, 1000
Sau96I	GGNCC	6 cut(s)	26, 211, 277, 322, 349, 1474
ScaI	AGTACT	1 cut(s)	1147
SchI	GAGTC	2 cut(s)	49, 1444
ScrFI	CCNGG	1 cut(s)	1368
SfaNI	GCATC	2 cut(s)	168, 1338
SinI	GGWCC	6 cut(s)	26, 211, 277, 322, 349, 1474
SmiMI	CAYNNNNRTG	2 cut(s)	1244, 1485
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SpeI	ACTAGT	2 cut(s)	970, 1046
SsiI	CCGC	6 cut(s)	205, 364, 587, 769, 921, 1537
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	4 cut(s)	18, 182, 971, 1047
StyD4I	CCNGG	1 cut(s)	1366
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	2 cut(s)	1009, 1549
TaiI	ACGT	3 cut(s)	100, 175, 225
TaqI	TCGA	6 cut(s)	489, 682, 739, 953, 1073, 1389
TaqII	GACCGA	1 cut(s)	1174
TatI	WGTACW	1 cut(s)	1145
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	86, 295, 1469
Tru1I	TTAA	7 cut(s)	564, 656, 765, 1014, 1359, 1401, 1561
Tru9I	TTAA	7 cut(s)	564, 656, 765, 1014, 1359, 1401, 1561
TscAI	CASTG	1 cut(s)	1552
TseFI	GTSAC	1 cut(s)	1138
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	1138
TspDTI	ATGAA	6 cut(s)	150, 541, 703, 1228, 1262, 1271
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	1552
Tth111I	GACNNNGTC	1 cut(s)	744
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	6 cut(s)	26, 211, 277, 322, 349, 1474
XapI	RAATTY	1 cut(s)	1339
XceI	RCATGY	1 cut(s)	921
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	4 cut(s)	18, 182, 971, 1047
ZrmI	AGTACT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.