Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Reverse (-)

14319582 .. 14320510

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAAGCGGAGGAGGAAGCTAAAAGGATAAGGCAGAAGCTGACACGTATAAATTCGTGGATGGAGCGAGTTGGTATGCCTCGGTCTTTGAAGGAAGTAGTCGAGACAAAAGTTAAAGAAAAATTGCAAGAAAACAAAAAGGCTAATCTTGAGAATGTATCGACTCTATTATCTTTTGTACCTTCGGGCGCCGACGAATTTGTAAAGTATCTCATCTGGAGGTGGATGCTAAAAAATCTGCCAGAGTTTAAAGATATGGAATCGTATTCGCGGTTCGGAATTTGGTCAATTTCCGATGCTTGGGAGATAGTGCAGTTCCCCAAAAATACTTCGATTGTTGAAAAGGACCGACCATTGGATCGCATGGTTGTCATTACAGAAGGCACTATAGGGGTCTACCCGACTAGCACGTACCCTTCTCCATCAGCAATCATTAAAGAATTTAAAGGGTCTCTTGACGAATGGAATGTCTACGGAGCTGAACAACTACTGAGTTGGGCACTCTCAACCAACGGAAATCTCGACTGCCTTCCTATCTCAAAAGAGACCCTCAAGTGTCATACCAAAGTAGAAGGCTTTGTTCTCACAGCCAGCAAGTTGAAGATAGCGTGCATTGAATGCGGCCTAATCGAAGACAATAGTTCTGATCAAGATCACGTGGGAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGCCTGAGATCAGCCTCGCTTTTTCGGCGACACCCTCAAAGCGTGAAGCCTGCATTACATTTAGATTTCGACCCCTCCAGCTACAAAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

263

Amino Acids

29.83

Weight (kDa)

6.47

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	2 cut(s)	396, 471
AccII	CGCG	1 cut(s)	271
AciI	CCGC	3 cut(s)	8, 271, 621
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	4 cut(s)	52, 197, 279, 440
AcvI	CACGTG	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	180, 413
AfiI	CCNNNNNNNGG	2 cut(s)	300, 355
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	91, 341, 601, 617
AluBI	AGCT	4 cut(s)	20, 40, 479, 777
AluI	AGCT	4 cut(s)	20, 40, 479, 777
Alw26I	GTCTC	3 cut(s)	98, 456, 539
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	622
ApoI	RAATTY	4 cut(s)	52, 197, 279, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	453, 485
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	639
BccI	CCATC	2 cut(s)	55, 430
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	3 cut(s)	98, 456, 539
BfaI	CTAG	2 cut(s)	405, 696
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	2 cut(s)	216, 286
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	2 cut(s)	238, 757
BpuEI	CTTGAG	2 cut(s)	170, 536
BsaAI	YACGTR	3 cut(s)	47, 411, 658
BsaBI	GATNNNNATC	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	2 cut(s)	456, 539
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 355
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	66, 231
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	2 cut(s)	300, 355
BseMII	CTCAG	2 cut(s)	482, 692
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	300, 355
BsmAI	GTCTC	3 cut(s)	98, 456, 539
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	2 cut(s)	456, 539
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	358, 646, 652, 704
BspACI	CCGC	3 cut(s)	8, 271, 621
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	483, 693
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	456, 539
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	358, 646, 652, 704
BssNI	GRCGYC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	618
BstBAI	YACGTR	3 cut(s)	47, 411, 658
BstC8I	GCNNGC	3 cut(s)	592, 610, 747
BstDEI	CTNAG	2 cut(s)	491, 701
BstF5I	GGATG	2 cut(s)	66, 231
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	361, 649, 655, 707
BstMAI	GTCTC	3 cut(s)	98, 456, 539
BstMBI	GATC	4 cut(s)	358, 646, 652, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	618, 721
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	66, 231
Cac8I	GCNNGC	3 cut(s)	592, 610, 747
CaiI	CAGNNNCTG	1 cut(s)	40
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	179, 412
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	2 cut(s)	179, 412
DdeI	CTNAG	2 cut(s)	491, 701
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	4 cut(s)	360, 648, 654, 706
DpnII	GATC	4 cut(s)	358, 646, 652, 704
DraI	TTTAAA	2 cut(s)	250, 445
Eco31I	GGTCTC	2 cut(s)	456, 539
Eco47I	GGWCC	1 cut(s)	346
Eco72I	CACGTG	1 cut(s)	658
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
FaeI	CATG	1 cut(s)	367
FaiI	YATR	6 cut(s)	50, 77, 257, 365, 389, 561
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FatI	CATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	396, 471
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	2 cut(s)	73, 238
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	2 cut(s)	405, 696
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	622
GsuI	CTGGAG	2 cut(s)	238, 757
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	163, 260
Hpy166II	GTNNAC	2 cut(s)	397, 472
Hpy188I	TCNGA	3 cut(s)	278, 295, 646
Hpy188III	TCNNGA	6 cut(s)	103, 149, 217, 455, 521, 650
Hpy8I	GTNNAC	2 cut(s)	397, 472
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	85, 192, 374, 426, 539, 566
HpyCH4IV	ACGT	3 cut(s)	46, 410, 657
HpyCH4V	TGCA	4 cut(s)	127, 313, 612, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	618, 721
HpyF3I	CTNAG	2 cut(s)	491, 701
HpySE526I	ACGT	3 cut(s)	46, 410, 657
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	358, 646, 652, 704
LmnI	GCTCC	2 cut(s)	64, 476
LpnPI	CCDG	6 cut(s)	202, 255, 604, 713, 759, 787
LweI	GCATC	2 cut(s)	216, 286
MaeI	CTAG	2 cut(s)	405, 696
MaeII	ACGT	3 cut(s)	46, 410, 657
MalI	GATC	4 cut(s)	360, 648, 654, 706
MboI	GATC	4 cut(s)	358, 646, 652, 704
MboII	GAAGA	3 cut(s)	613, 644, 684
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	8 cut(s)	52, 122, 197, 279, 288, 440, 663, 670
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	4, 7, 90, 213, 560, 673, 721, 741, 781
MseI	TTAA	4 cut(s)	114, 249, 435, 444
Mva1269I	GAATGC	1 cut(s)	623
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	618, 721
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	4 cut(s)	358, 646, 652, 704
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	623
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	192
PmaCI	CACGTG	1 cut(s)	658
PmlI	CACGTG	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	3 cut(s)	47, 411, 658
PspCI	CACGTG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	346
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
PstNI	CAGNNNCTG	1 cut(s)	40
RsaI	GTAC	2 cut(s)	180, 413
RsaNI	GTAC	2 cut(s)	179, 412
SaqAI	TTAA	4 cut(s)	114, 249, 435, 444
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	4 cut(s)	358, 646, 652, 704
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	9 cut(s)	22, 42, 49, 184, 224, 413, 481, 660, 779
SfaNI	GCATC	2 cut(s)	216, 286
SfcI	CTRYAG	1 cut(s)	387
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	149, 551
SmoI	CTYRAG	2 cut(s)	149, 551
Sse9I	AATT	8 cut(s)	52, 122, 197, 279, 288, 440, 663, 670
SsiI	CCGC	3 cut(s)	8, 271, 621
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	405, 696
TaiI	ACGT	3 cut(s)	49, 413, 660
TaqI	TCGA	6 cut(s)	102, 161, 332, 522, 630, 765
TaqII	GACCGA	2 cut(s)	72, 363
TasI	AATT	8 cut(s)	52, 122, 197, 279, 288, 440, 663, 670
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	4 cut(s)	114, 249, 435, 444
Tru9I	TTAA	4 cut(s)	114, 249, 435, 444
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	489, 528
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	4 cut(s)	52, 197, 279, 440
XmiI	GTMKAC	2 cut(s)	396, 471
XspI	CTAG	2 cut(s)	405, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.