Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001823.1

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

10255 .. 11256

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001823.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgtgtgcatgcacaattataagtataccttatggtggaactgagcgagctagcttcttgtttgtcgtgagacagacatttatgcaaatgaaaactatgaaagcggaggaggaagctggaaggataaggcaaatgctgacacggataaattcgtggatggaccgagttgatttccctccccgggtgaaggaagaagtccagaccaaaattcaagaaaagttgcaagaaaacaaaaaggctaacatttataatgtattgactctattatcttttgtaccttcgtactaccgcgaagatggaaagagtgatgtctgcgtgacgacgttaaagaagctgccagtttttaaaggtatcagaccatatgtgctgcgtcaaatttctcggttgatggagacagtggagtaccccgaaaatacttcgattgttaaaaaggacgaatcattggaccgcatggttttcattacagaagggactatgagggtctacaggactagcacggacccttctccatcagcaatcattcaagggtctcttgacgaatggaatgtctacggagctggacaactactgagttgggcaccctcaaccaacggaaatctcgaccgccttcctatctcaaaagagatcgtcaagtgtcataccaaagtagaaggctttgttctcacagccagcaacttgaagagagtctacaatgaatgcggcctactcgaagacaataattctgatcaagatcacttgggaattagtaattctattgaggggaaaagttcttctagcctgagatcagcctctctttttcggcgacaccttcaaagagtgaagcctgcattagatatcgacccctctagctacaaaggaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

287

Amino Acids

32.65

Weight (kDa)

8.97

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	20, 249
AccB1I	GGYRCC	1 cut(s)	577
AccI	GTMKAC	4 cut(s)	25, 483, 549, 687
AccII	CGCG	1 cut(s)	291
AciI	CCGC	5 cut(s)	104, 289, 448, 604, 699
AcsI	RAATTY	3 cut(s)	148, 207, 375
AfaI	GTAC	3 cut(s)	276, 284, 404
AfiI	CCNNNNNNNGG	3 cut(s)	35, 181, 187
AgsI	TTSAA	4 cut(s)	212, 524, 679, 812
AluBI	AGCT	6 cut(s)	50, 54, 116, 334, 557, 849
AluI	AGCT	6 cut(s)	50, 54, 116, 334, 557, 849
Alw26I	GTCTC	3 cut(s)	64, 386, 534
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	2 cut(s)	334, 367
ApoI	RAATTY	3 cut(s)	148, 207, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AspS9I	GGNCC	3 cut(s)	160, 445, 499
AsuC2I	CCSGG	2 cut(s)	181, 182
AsuHPI	GGTGA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	3 cut(s)	160, 445, 499
BaeGI	GKGCMC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbsI	GAAGAC	1 cut(s)	717
BbvI	GCAGC	2 cut(s)	321, 354
BccI	CCATC	4 cut(s)	151, 290, 382, 517
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	2 cut(s)	181, 182
BcoDI	GTCTC	3 cut(s)	64, 386, 534
BfaI	CTAG	4 cut(s)	51, 492, 774, 846
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	3 cut(s)	335, 368, 700
BlsI	GCNGC	3 cut(s)	336, 369, 701
Bme1390I	CCNGG	2 cut(s)	181, 182
Bme18I	GGWCC	3 cut(s)	160, 445, 499
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	160, 445, 499
BmiI	GGNNCC	2 cut(s)	501, 579
BmrFI	CCNGG	2 cut(s)	181, 182
BmtI	GCTAGC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	717
BpuMI	CCSGG	2 cut(s)	181, 182
BsaBI	GATNNNNATC	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	179, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 181, 187
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	2 cut(s)	179, 180
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	3 cut(s)	35, 181, 187
BseMII	CTCAG	3 cut(s)	33, 560, 770
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	321, 354
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	702
BshNI	GGYRCC	1 cut(s)	577
BsiEI	CGRYCG	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	3 cut(s)	35, 181, 187
BsmAI	GTCTC	3 cut(s)	64, 386, 534
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	702
Bso31I	GGTCTC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	624, 724, 730, 782
BspACI	CCGC	5 cut(s)	104, 289, 448, 604, 699
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	34, 561, 771
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	501, 579
BspOI	GCTAGC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	179, 180
BssMI	GATC	4 cut(s)	624, 724, 730, 782
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	674
BstC8I	GCNNGC	5 cut(s)	10, 48, 52, 670, 825
BstDEI	CTNAG	3 cut(s)	42, 569, 779
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	4 cut(s)	627, 727, 733, 785
BstMAI	GTCTC	3 cut(s)	64, 386, 534
BstMBI	GATC	4 cut(s)	624, 724, 730, 782
BstMCI	CGRYCG	1 cut(s)	604
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	179, 180
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	321, 354
BstV2I	GAAGAC	1 cut(s)	717
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	5 cut(s)	10, 48, 52, 670, 825
Cfr13I	GGNCC	3 cut(s)	160, 445, 499
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	275, 283, 403
CviAII	CATG	2 cut(s)	9, 451
CviQI	GTAC	3 cut(s)	275, 283, 403
DdeI	CTNAG	3 cut(s)	42, 569, 779
DpnI	GATC	4 cut(s)	626, 726, 732, 784
DpnII	GATC	4 cut(s)	624, 724, 730, 782
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	3 cut(s)	160, 445, 499
Eco88I	CYCGRG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	835
FaeI	CATG	2 cut(s)	12, 454
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 516, 548
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	8, 450
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	4 cut(s)	25, 483, 549, 687
Fnu4HI	GCNGC	3 cut(s)	335, 368, 700
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	335, 368, 700
FspBI	CTAG	4 cut(s)	51, 492, 774, 846
GluI	GCNGC	3 cut(s)	335, 368, 700
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	12, 454
HinfI	GANTC	3 cut(s)	259, 437, 684
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	4 cut(s)	26, 484, 550, 688
Hpy188I	TCNGA	2 cut(s)	356, 724
Hpy188III	TCNNGA	6 cut(s)	67, 199, 212, 533, 599, 728
Hpy8I	GTNNAC	4 cut(s)	26, 484, 550, 688
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	8 cut(s)	114, 181, 288, 461, 513, 617, 644, 818
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	5 cut(s)	8, 12, 85, 223, 827
HpyF3I	CTNAG	3 cut(s)	42, 569, 779
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	12, 454
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	4 cut(s)	624, 724, 730, 782
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	9 cut(s)	102, 194, 212, 351, 472, 543, 682, 791, 837
Lsp1109I	GCAGC	2 cut(s)	321, 354
MaeI	CTAG	4 cut(s)	51, 492, 774, 846
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	4 cut(s)	626, 726, 732, 784
MboI	GATC	4 cut(s)	624, 724, 730, 782
MboII	GAAGA	5 cut(s)	203, 305, 691, 722, 762
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	7 cut(s)	15, 148, 207, 375, 718, 741, 748
MlyI	GAGTC	2 cut(s)	253, 693
MnlI	CCTC	8 cut(s)	100, 103, 186, 471, 592, 751, 799, 853
MseI	TTAA	3 cut(s)	326, 345, 426
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	181, 182
Mva1269I	GAATGC	1 cut(s)	701
MvnI	CGCG	1 cut(s)	291
NciI	CCSGG	2 cut(s)	181, 182
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	624, 724, 730, 782
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	12, 454
NlaIV	GGNNCC	2 cut(s)	501, 579
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	336, 369, 701
PleI	GAGTC	2 cut(s)	253, 692
PpsI	GAGTC	2 cut(s)	253, 692
PsiI	TTATAA	2 cut(s)	20, 249
PspN4I	GGNNCC	2 cut(s)	501, 579
PspPI	GGNCC	3 cut(s)	160, 445, 499
RsaI	GTAC	3 cut(s)	276, 284, 404
RsaNI	GTAC	3 cut(s)	275, 283, 403
SaqAI	TTAA	3 cut(s)	326, 345, 426
SatI	GCNGC	3 cut(s)	335, 368, 700
Sau3AI	GATC	4 cut(s)	624, 724, 730, 782
Sau96I	GGNCC	3 cut(s)	160, 445, 499
SchI	GAGTC	2 cut(s)	253, 693
ScrFI	CCNGG	2 cut(s)	181, 182
SduI	GDGCHC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	3 cut(s)	160, 445, 499
SmaI	CCCGGG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	7 cut(s)	15, 148, 207, 375, 718, 741, 748
SsiI	CCGC	5 cut(s)	104, 289, 448, 604, 699
SspMI	CTAG	4 cut(s)	51, 492, 774, 846
StyD4I	CCNGG	2 cut(s)	179, 180
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	419, 600, 708, 837
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	7 cut(s)	15, 148, 207, 375, 718, 741, 748
TauI	GCSGC	1 cut(s)	702
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	3 cut(s)	326, 345, 426
Tru9I	TTAA	3 cut(s)	326, 345, 426
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	334, 367
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	104, 113, 448, 708
TspGWI	ACGGA	4 cut(s)	157, 512, 567, 606
TspMI	CCCGGG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	3 cut(s)	160, 445, 499
XapI	RAATTY	3 cut(s)	148, 207, 375
XceI	RCATGY	1 cut(s)	12
XmaI	CCCGGG	1 cut(s)	180
XmiI	GTMKAC	4 cut(s)	25, 483, 549, 687
XspI	CTAG	4 cut(s)	51, 492, 774, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.