Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 |
| rosa_chinensis | RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461 |
| rosa_laevigata | RLG00000027646 RLG00000027647 |
| rosa_multiflora | Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160 |
| rosa_rugosa | Rorug01G0298100 |
| rosa_samantha | Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900 |
| rosa_wichuraiana | Rw0G020280 Rw1G027280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| AccB1I | GGYRCC | 1 cut(s) | 403 |
| AclWI | GGATC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AgsI | TTSAA | 2 cut(s) | 194, 384 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 49 |
| AluBI | AGCT | 1 cut(s) | 293 |
| AluI | AGCT | 1 cut(s) | 293 |
| Alw26I | GTCTC | 1 cut(s) | 139 |
| AlwI | GGATC | 1 cut(s) | 137 |
| ApeKI | GCWGC | 1 cut(s) | 28 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 92, 124 |
| BanI | GGYRCC | 1 cut(s) | 403 |
| BbvI | GCAGC | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 139 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfmI | CTRYAG | 2 cut(s) | 29, 288 |
| BisI | GCNGC | 1 cut(s) | 29 |
| BlsI | GCNGC | 1 cut(s) | 30 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 49 |
| BmiI | GGNNCC | 2 cut(s) | 358, 405 |
| BmsI | GCATC | 2 cut(s) | 15, 46 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseXI | GCAGC | 1 cut(s) | 15 |
| BshNI | GGYRCC | 1 cut(s) | 403 |
| BslFI | GGGAC | 3 cut(s) | 113, 275, 326 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsmAI | GTCTC | 1 cut(s) | 139 |
| BsmFI | GGGAC | 3 cut(s) | 113, 275, 326 |
| Bsp143I | GATC | 2 cut(s) | 142, 233 |
| BspLI | GGNNCC | 2 cut(s) | 358, 405 |
| BspMAI | CTGCAG | 1 cut(s) | 33 |
| BspPI | GGATC | 1 cut(s) | 137 |
| BspT107I | GGYRCC | 1 cut(s) | 403 |
| BssMI | GATC | 2 cut(s) | 142, 233 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 37 |
| BstC8I | GCNNGC | 2 cut(s) | 61, 306 |
| BstDEI | CTNAG | 1 cut(s) | 294 |
| BstKTI | GATC | 2 cut(s) | 145, 236 |
| BstMAI | GTCTC | 1 cut(s) | 139 |
| BstMBI | GATC | 2 cut(s) | 142, 233 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 37 |
| BstNSI | RCATGY | 1 cut(s) | 433 |
| BstSFI | CTRYAG | 2 cut(s) | 29, 288 |
| BstV1I | GCAGC | 1 cut(s) | 15 |
| BstX2I | RGATCY | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 142 |
| Cac8I | GCNNGC | 2 cut(s) | 61, 306 |
| CviAII | CATG | 3 cut(s) | 93, 300, 430 |
| CviJI | RGCY | 3 cut(s) | 287, 293, 359 |
| CviKI_1 | RGCY | 3 cut(s) | 287, 293, 359 |
| DdeI | CTNAG | 1 cut(s) | 294 |
| DpnI | GATC | 2 cut(s) | 144, 235 |
| DpnII | GATC | 2 cut(s) | 142, 233 |
| DriI | GACNNNNNGTC | 1 cut(s) | 49 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 49 |
| FaeI | CATG | 3 cut(s) | 96, 303, 433 |
| FaqI | GGGAC | 3 cut(s) | 113, 275, 326 |
| FatI | CATG | 3 cut(s) | 92, 299, 429 |
| FauNDI | CATATG | 1 cut(s) | 257 |
| Fnu4HI | GCNGC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 1 cut(s) | 29 |
| FspBI | CTAG | 1 cut(s) | 140 |
| GluI | GCNGC | 1 cut(s) | 29 |
| Hin1II | CATG | 3 cut(s) | 96, 303, 433 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 131, 314 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 37 |
| HpyF3I | CTNAG | 1 cut(s) | 294 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92II | CATG | 3 cut(s) | 96, 303, 433 |
| Kzo9I | GATC | 2 cut(s) | 142, 233 |
| LmnI | GCTCC | 1 cut(s) | 356 |
| LpnPI | CCDG | 3 cut(s) | 17, 26, 58 |
| Lsp1109I | GCAGC | 1 cut(s) | 15 |
| LweI | GCATC | 2 cut(s) | 15, 46 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MalI | GATC | 2 cut(s) | 144, 235 |
| MboI | GATC | 2 cut(s) | 142, 233 |
| MboII | GAAGA | 2 cut(s) | 61, 191 |
| MflI | RGATCY | 1 cut(s) | 142 |
| MluCI | AATT | 1 cut(s) | 277 |
| MmeI | TCCRAC | 1 cut(s) | 188 |
| MseI | TTAA | 2 cut(s) | 86, 267 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 257 |
| NdeII | GATC | 2 cut(s) | 142, 233 |
| NlaIII | CATG | 3 cut(s) | 96, 303, 433 |
| NlaIV | GGNNCC | 2 cut(s) | 358, 405 |
| NspI | RCATGY | 1 cut(s) | 433 |
| PkrI | GCNGC | 1 cut(s) | 30 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| PspN4I | GGNNCC | 2 cut(s) | 358, 405 |
| PstI | CTGCAG | 1 cut(s) | 33 |
| PsuI | RGATCY | 1 cut(s) | 142 |
| SaqAI | TTAA | 2 cut(s) | 86, 267 |
| SatI | GCNGC | 1 cut(s) | 29 |
| Sau3AI | GATC | 2 cut(s) | 142, 233 |
| SetI | ASST | 2 cut(s) | 53, 295 |
| SfaNI | GCATC | 2 cut(s) | 15, 46 |
| SfcI | CTRYAG | 2 cut(s) | 29, 288 |
| Sse9I | AATT | 1 cut(s) | 277 |
| SspMI | CTAG | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TasI | AATT | 1 cut(s) | 277 |
| Tru1I | TTAA | 2 cut(s) | 86, 267 |
| Tru9I | TTAA | 2 cut(s) | 86, 267 |
| TseI | GCWGC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 1 cut(s) | 244 |
| TspGWI | ACGGA | 1 cut(s) | 257 |
| XceI | RCATGY | 1 cut(s) | 433 |
| XspI | CTAG | 1 cut(s) | 140 |