Rmu_co8099662.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8099662.1
OG0005197
Physical Location & Seq
Reverse (-)
1 .. 576
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8099662.1_g000001.1.cds

Sequence Viewer

Length: 474 bp
atgctagagatacttgataactcatggcggaaggtccgaaggaacgtaacgatactacgtgataacttatggtggaaggttgataacttaaggtggaaggtccgaaggaacatgaggatactacctgataacttatggtggaaggtccgaagcaacatagcaaggtggaaggtccgaagtttatggcggaatgcaaccagtgtaataagctcatggtgggatacaatatttgtaacatcttgtgtgattgcagtctcacaagatcctctatttttttatattccaaccataaatgaggaagaaaagtgcctcgaaatggacaccaagttgatgattgtgttactcgttttgcgatcactcacggacatcattttcatatgggacattaaaagtcaaaattataaggctgcagcaatagctaagacatggcgagcagttgcaacagatttttttgctatacttcccgtcccacaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

158

Amino Acids

18.97

Weight (kDa)

10.01

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AciI CCGC 2 cut(s) 28, 187
AclWI GGATC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 1 cut(s) 88
AluBI AGCT 2 cut(s) 210, 419
AluI AGCT 2 cut(s) 210, 419
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 407, 410
AspS9I GGNCC 4 cut(s) 34, 100, 145, 172
AvaII GGWCC 4 cut(s) 34, 100, 145, 172
BbvI GCAGC 2 cut(s) 394, 422
BciVI GTATCC 2 cut(s) 111, 214
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 88
BfuI GTATCC 2 cut(s) 111, 214
BisI GCNGC 2 cut(s) 408, 411
BlsI GCNGC 2 cut(s) 409, 412
Bme18I GGWCC 4 cut(s) 34, 100, 145, 172
BmgT120I GGNCC 4 cut(s) 34, 100, 145, 172
BsaAI YACGTR 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 394, 422
BslFI GGGAC 2 cut(s) 395, 452
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 395, 452
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 262, 353
BspACI CCGC 2 cut(s) 28, 187
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 198
BssMI GATC 2 cut(s) 262, 353
BstAFI CTTAAG 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 420
BstKTI GATC 2 cut(s) 265, 356
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 2 cut(s) 262, 353
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 394, 422
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 2 cut(s) 111, 214
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 4 cut(s) 34, 100, 145, 172
CviAII CATG 4 cut(s) 24, 112, 213, 426
CviJI RGCY 3 cut(s) 210, 407, 419
CviKI_1 RGCY 3 cut(s) 210, 407, 419
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 264, 355
DpnII GATC 2 cut(s) 262, 353
EciI GGCGGA 2 cut(s) 43, 202
Eco47I GGWCC 4 cut(s) 34, 100, 145, 172
FaeI CATG 4 cut(s) 27, 115, 216, 429
FaqI GGGAC 2 cut(s) 395, 452
FatI CATG 4 cut(s) 23, 111, 212, 425
FauNDI CATATG 1 cut(s) 377
Fnu4HI GCNGC 2 cut(s) 408, 411
Fsp4HI GCNGC 2 cut(s) 408, 411
FspBI CTAG 1 cut(s) 5
GluI GCNGC 2 cut(s) 408, 411
Hin1II CATG 4 cut(s) 27, 115, 216, 429
Hpy188I TCNGA 4 cut(s) 38, 104, 149, 176
HpyAV CCTTC 7 cut(s) 25, 33, 70, 91, 99, 136, 163
HpyCH4IV ACGT 2 cut(s) 45, 58
HpyCH4V TGCA 4 cut(s) 194, 251, 410, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 2 cut(s) 45, 58
Hsp92II CATG 4 cut(s) 27, 115, 216, 429
Kzo9I GATC 2 cut(s) 262, 353
LpnPI CCDG 2 cut(s) 138, 211
Lsp1109I GCAGC 2 cut(s) 394, 422
MaeI CTAG 1 cut(s) 5
MaeII ACGT 2 cut(s) 45, 58
MaeIII GTNAC 3 cut(s) 46, 232, 339
MalI GATC 2 cut(s) 264, 355
MboI GATC 2 cut(s) 262, 353
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 262
MluCI AATT 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 4 cut(s) 108, 276, 289, 320
MseI TTAA 2 cut(s) 89, 387
MspCI CTTAAG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeI CATATG 1 cut(s) 377
NdeII GATC 2 cut(s) 262, 353
NlaIII CATG 4 cut(s) 27, 115, 216, 429
PctI GAATGC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 409, 412
Ppu21I YACGTR 1 cut(s) 59
PsiI TTATAA 1 cut(s) 402
PspPI GGNCC 4 cut(s) 34, 100, 145, 172
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 2 cut(s) 89, 387
SatI GCNGC 2 cut(s) 408, 411
Sau3AI GATC 2 cut(s) 262, 353
Sau96I GGNCC 4 cut(s) 34, 100, 145, 172
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 4 cut(s) 34, 100, 145, 172
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 397
SsiI CCGC 2 cut(s) 28, 187
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 5
TaiI ACGT 2 cut(s) 48, 61
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 397
Tru1I TTAA 2 cut(s) 89, 387
Tru9I TTAA 2 cut(s) 89, 387
TscAI CASTG 1 cut(s) 205
TseI GCWGC 2 cut(s) 407, 410
TspDTI ATGAA 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 4 cut(s) 34, 100, 145, 172
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.