Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

17621369 .. 17626068

Gene Structure 4700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG084300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAATAGAGAGGACTCACTCGCAAGACGAGGAAGACCCCGCTGAATCAAGGTTTGCAATATGTTACGACGGAGTACGCACGACAATGATGCCAGAGATATCAACAAGGAAGGTCCGATTCTTATGGATAGGCTCATGGTGGGATACAACACTTGTAACATGTGTGATTGCAGTCTTACTGGATCCTTTATTTTTTTATATTCCAACTATAAATGAAGGAGAAAAGTGCCTTGAAAGGGACACCAAGCTGATGATTGTATCACTCGTTTTGCGATCATTCACGGACATCATTTTCATATGGGACATTATAAACCAAATTTGTAAGAGTACGTCAATAGCTAAGAAATGGCGATTATTGGCAGCGGACTTTCTTGCTATACTTCCCGCCCAACAGGTATTAATAATAATCATCCTTTACAAAAATCGAGACTTGGGATATCTGAATGTCTTTCTTTTCATCCAACATGCATCAAGGATTAATCGACTTAGTCAATCATTTGACAATTTCAAGCAGAAAAGGGACGCCGGATTATGGTTCAAAATTGCATTCAATTTTTTTCGATATATCCTTGCCTGTCACGTAAGTTTGAATTATTTTATCATCATATATATTAGGTTCTTATCTTACATGACATATTATTCTTATTTCTCATTTGTTAAGAGTTTTACTTTATTATTTTTAACAATATTGTTTTTAGTAACTAATCTACTTGTCTTTAGATACTTGGAGCCTCATGGTTTTTCTTTTCCGTTCAACGAGAGATGTTATGTTGGCACCAAACTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

263

Amino Acids

31.2

Weight (kDa)

8.83

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	776
AciI	CCGC	3 cut(s)	42, 365, 387
AclWI	GGATC	2 cut(s)	179, 192
AcsI	RAATTY	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	78, 331
AfiI	CCNNNNNNNGG	2 cut(s)	238, 534
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	236, 511, 541, 553, 592, 757
AluBI	AGCT	2 cut(s)	250, 341
AluI	AGCT	2 cut(s)	250, 341
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	179, 192
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	318
AseI	ATTAAT	2 cut(s)	401, 480
AspS9I	GGNCC	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciVI	GTATCC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	186, 732, 778
BmsI	GCATC	2 cut(s)	81, 479
BpiI	GAAGAC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 534
Bse1I	ACTGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	411, 459
BseLI	CCNNNNNNNGG	2 cut(s)	238, 534
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	3 cut(s)	254, 317, 536
BslI	CCNNNNNNNGG	2 cut(s)	238, 534
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	3 cut(s)	254, 317, 536
BsmI	GAATGC	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	184, 275
BspACI	CCGC	3 cut(s)	42, 365, 387
BspLI	GGNNCC	3 cut(s)	186, 732, 778
BspPI	GGATC	2 cut(s)	179, 192
BspT107I	GGYRCC	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	184, 275
BssNI	GRCGYC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	342, 488
BstF5I	GGATG	2 cut(s)	411, 459
BstKTI	GATC	2 cut(s)	187, 278
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	184, 275
BstNSI	RCATGY	2 cut(s)	165, 470
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	411, 459
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	77, 330
CviAII	CATG	5 cut(s)	138, 162, 467, 631, 737
CviJI	RGCY	4 cut(s)	135, 250, 341, 733
CviKI_1	RGCY	4 cut(s)	135, 250, 341, 733
CviQI	GTAC	2 cut(s)	77, 330
DdeI	CTNAG	2 cut(s)	342, 488
DpnI	GATC	2 cut(s)	186, 277
DpnII	GATC	2 cut(s)	184, 275
Eco32I	GATATC	2 cut(s)	102, 440
Eco47I	GGWCC	1 cut(s)	115
EcoRV	GATATC	2 cut(s)	102, 440
EcoT22I	ATGCAT	1 cut(s)	472
FaeI	CATG	5 cut(s)	141, 165, 470, 634, 740
FaqI	GGGAC	3 cut(s)	254, 317, 536
FatI	CATG	5 cut(s)	137, 161, 466, 630, 736
FauI	CCCGC	2 cut(s)	49, 394
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	2 cut(s)	398, 446
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	141, 165, 470, 634, 740
HinfI	GANTC	3 cut(s)	16, 47, 120
HpaII	CCGG	1 cut(s)	528
Hpy188I	TCNGA	2 cut(s)	119, 444
Hpy188III	TCNNGA	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	106, 212
HpyCH4IV	ACGT	2 cut(s)	332, 582
HpyCH4V	TGCA	4 cut(s)	59, 173, 470, 548
HpyF3I	CTNAG	2 cut(s)	342, 488
HpySE526I	ACGT	2 cut(s)	332, 582
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	5 cut(s)	141, 165, 470, 634, 740
Kzo9I	GATC	2 cut(s)	184, 275
LmnI	GCTCC	1 cut(s)	730
LpnPI	CCDG	5 cut(s)	108, 167, 380, 541, 589
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	81, 479
MaeII	ACGT	2 cut(s)	332, 582
MaeIII	GTNAC	4 cut(s)	65, 157, 578, 700
MalI	GATC	2 cut(s)	186, 277
MboI	GATC	2 cut(s)	184, 275
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	5 cut(s)	318, 505, 543, 553, 592
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	2 cut(s)	230, 487
MnlI	CCTC	3 cut(s)	6, 25, 744
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	4 cut(s)	401, 480, 660, 683
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	44, 365
MspI	CCGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	2 cut(s)	184, 275
NlaIII	CATG	5 cut(s)	141, 165, 470, 634, 740
NlaIV	GGNNCC	3 cut(s)	186, 732, 778
NmuCI	GTSAC	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	2 cut(s)	165, 470
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	47, 120
PflFI	GACNNNGTC	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	583
PscI	ACATGT	1 cut(s)	161
PshBI	ATTAAT	2 cut(s)	401, 480
PsiI	TTATAA	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	186, 732, 778
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	489
RsaI	GTAC	2 cut(s)	78, 331
RsaNI	GTAC	2 cut(s)	77, 330
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	401, 480, 660, 683
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	184, 275
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	10
SetI	ASST	8 cut(s)	56, 117, 252, 335, 343, 399, 585, 620
SfaNI	GCATC	2 cut(s)	81, 479
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	318, 505, 543, 553, 592
SsiI	CCGC	3 cut(s)	42, 365, 387
SspI	AATATT	1 cut(s)	690
TaiI	ACGT	2 cut(s)	335, 585
TaqI	TCGA	3 cut(s)	427, 484, 562
TasI	AATT	5 cut(s)	318, 505, 543, 553, 592
TfiI	GAWTC	2 cut(s)	47, 120
Tru1I	TTAA	4 cut(s)	401, 480, 660, 683
Tru9I	TTAA	4 cut(s)	401, 480, 660, 683
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	231, 286, 448
TspGWI	ACGGA	3 cut(s)	87, 299, 741
Tth111I	GACNNNGTC	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	2 cut(s)	401, 480
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	2 cut(s)	165, 470
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.