Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

56103160 .. 56107014

Gene Structure 3855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG288100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAATAGAGAAGACTAGCTCAGATCCTCAGTCTATTCCAATTTCAACAATGACTCGCTCGCCAGATGAGGAAGACCCCGCTAAATCAAGGTGCTATATGAGTATGTCAGACAAGATAACAAGCCTACTTCAATGCCTATTTTGTTCATGGTTTGCAACATGTTACGACGGAGTATGCACGACAATACGTGTGATGCTAGAGATACTTGATAACTCATGGCGGAAGGTCCGAAGGAACGTAACGATACTACGTGATAAGTTATGGTGGAAGCTTGATAACTTAAGGTGGAAGGTCCGAAGGAACATGAGGATACTACCTGATAACTTATGGTGGAAGGTCCGAAGCAACATAGCAAGGTGGAAGGTCCGAAGTTTATGGCGGAATGCAACGAGTGTAATAAGCTCATGGTGGGATACAATATTTGTAACATCTTGTGTGATTGCAGTCTCACAAGATCCTTTATTTTTTTATATTCCAACTATAAATGAGGAAGAAAAGTGCCTCGAAATGGACACCAATTTGATGATTGTGTTACTCGTTTTGCGATCACTCACGGACATCATTTTCATATGGGACATTAAAAGTCAAAATTATAAGGCTGCAGCAATAGCTAAGACATGGCGAGCAGTTGCAACAGACTTTTTTGCTATACTTCCCGTCCCACAAGTGTTAATAATAGTTGTCCTTTACAAACATCGAGACTTGGGATATCTGAATGTGTTTCTTTTCATCCAATATGTACCAAGGATTTATCGACTTAGTCAATCGTTTGACAATCTTAAGCGGAGAAGGGACACCGGATTATGGGTCAAAGTTGCATTCAATTTTTTTCTATACATCCTTGCTTGTCACCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

286

Amino Acids

34.01

Weight (kDa)

9.49

Isoelectric Point (pI)

64.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AciI	CCGC	5 cut(s)	81, 223, 382, 787, 856
AclWI	GGATC	2 cut(s)	20, 452
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	2 cut(s)	511, 807
AflII	CTTAAG	2 cut(s)	283, 782
AflIII	ACRYGT	2 cut(s)	161, 190
AgsI	TTSAA	3 cut(s)	48, 134, 826
AluBI	AGCT	4 cut(s)	21, 274, 405, 614
AluI	AGCT	4 cut(s)	21, 274, 405, 614
Alw26I	GTCTC	2 cut(s)	454, 696
AlwI	GGATC	2 cut(s)	20, 452
ApeKI	GCWGC	2 cut(s)	602, 605
AspS9I	GGNCC	4 cut(s)	229, 295, 340, 367
AsuHPI	GGTGA	1 cut(s)	845
AvaII	GGWCC	4 cut(s)	229, 295, 340, 367
BbsI	GAAGAC	2 cut(s)	20, 81
BbvI	GCAGC	2 cut(s)	589, 617
BciVI	GTATCC	2 cut(s)	306, 409
BcoDI	GTCTC	2 cut(s)	454, 696
BfaI	CTAG	2 cut(s)	18, 200
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	2 cut(s)	283, 782
BfuI	GTATCC	2 cut(s)	306, 409
BisI	GCNGC	2 cut(s)	603, 606
BlsI	GCNGC	2 cut(s)	604, 607
Bme18I	GGWCC	4 cut(s)	229, 295, 340, 367
BmgT120I	GGNCC	4 cut(s)	229, 295, 340, 367
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	20, 81
BsaAI	YACGTR	2 cut(s)	191, 254
BsaJI	CCNNGG	1 cut(s)	746
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 807
BseDI	CCNNGG	1 cut(s)	746
BseGI	GGATG	2 cut(s)	732, 840
BseLI	CCNNNNNNNGG	2 cut(s)	511, 807
BseMII	CTCAG	2 cut(s)	36, 44
BseXI	GCAGC	2 cut(s)	589, 617
BsiSI	CCGG	1 cut(s)	801
BslFI	GGGAC	3 cut(s)	590, 647, 809
BslI	CCNNNNNNNGG	2 cut(s)	511, 807
BsmAI	GTCTC	2 cut(s)	454, 696
BsmFI	GGGAC	3 cut(s)	590, 647, 809
BsmI	GAATGC	2 cut(s)	391, 821
Bsp143I	GATC	3 cut(s)	25, 457, 548
BspACI	CCGC	5 cut(s)	81, 223, 382, 787, 856
BspCNI	CTCAG	2 cut(s)	35, 43
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	2 cut(s)	20, 452
BspTI	CTTAAG	2 cut(s)	283, 782
BssECI	CCNNGG	1 cut(s)	746
BssMI	GATC	3 cut(s)	25, 457, 548
BssT1I	CCWWGG	1 cut(s)	746
BstAFI	CTTAAG	2 cut(s)	283, 782
BstBAI	YACGTR	2 cut(s)	191, 254
BstC8I	GCNNGC	2 cut(s)	62, 627
BstDEI	CTNAG	4 cut(s)	22, 30, 615, 761
BstF5I	GGATG	2 cut(s)	732, 840
BstKTI	GATC	3 cut(s)	28, 460, 551
BstMAI	GTCTC	2 cut(s)	454, 696
BstMBI	GATC	3 cut(s)	25, 457, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	589, 617
BstV2I	GAAGAC	2 cut(s)	20, 81
BstX2I	RGATCY	2 cut(s)	25, 457
BstYI	RGATCY	2 cut(s)	25, 457
BsuI	GTATCC	2 cut(s)	306, 409
BtsCI	GGATG	2 cut(s)	732, 840
Cac8I	GCNNGC	2 cut(s)	62, 627
Cfr13I	GGNCC	4 cut(s)	229, 295, 340, 367
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	6 cut(s)	150, 162, 219, 307, 408, 621
CviJI	RGCY	6 cut(s)	21, 126, 274, 405, 602, 614
CviKI_1	RGCY	6 cut(s)	21, 126, 274, 405, 602, 614
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	4 cut(s)	22, 30, 615, 761
DpnI	GATC	3 cut(s)	27, 459, 550
DpnII	GATC	3 cut(s)	25, 457, 548
EciI	GGCGGA	2 cut(s)	238, 397
Eco130I	CCWWGG	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	4 cut(s)	229, 295, 340, 367
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	746
FaeI	CATG	6 cut(s)	153, 165, 222, 310, 411, 624
FaqI	GGGAC	3 cut(s)	590, 647, 809
FatI	CATG	6 cut(s)	149, 161, 218, 306, 407, 620
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	572
Fnu4HI	GCNGC	2 cut(s)	603, 606
FokI	GGATG	2 cut(s)	719, 827
Fsp4HI	GCNGC	2 cut(s)	603, 606
FspBI	CTAG	2 cut(s)	18, 200
GluI	GCNGC	2 cut(s)	603, 606
HapII	CCGG	1 cut(s)	801
Hin1II	CATG	6 cut(s)	153, 165, 222, 310, 411, 624
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	801
HphI	GGTGA	1 cut(s)	845
Hpy188I	TCNGA	7 cut(s)	25, 112, 233, 299, 344, 371, 717
Hpy188III	TCNNGA	1 cut(s)	701
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	7 cut(s)	220, 228, 286, 294, 331, 358, 786
HpyCH4IV	ACGT	3 cut(s)	190, 240, 253
HpyCH4V	TGCA	7 cut(s)	158, 180, 389, 446, 605, 635, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	4 cut(s)	22, 30, 615, 761
HpySE526I	ACGT	3 cut(s)	190, 240, 253
Hsp92II	CATG	6 cut(s)	153, 165, 222, 310, 411, 624
Kzo9I	GATC	3 cut(s)	25, 457, 548
LpnPI	CCDG	3 cut(s)	78, 333, 814
Lsp1109I	GCAGC	2 cut(s)	589, 617
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	18, 200
MaeII	ACGT	3 cut(s)	190, 240, 253
MaeIII	GTNAC	5 cut(s)	164, 241, 427, 534, 851
MalI	GATC	3 cut(s)	27, 459, 550
MboI	GATC	3 cut(s)	25, 457, 548
MboII	GAAGA	3 cut(s)	25, 86, 506
MflI	RGATCY	2 cut(s)	25, 457
MluCI	AATT	4 cut(s)	42, 520, 592, 826
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	39, 64, 303, 484, 515
MseI	TTAA	4 cut(s)	284, 582, 674, 783
MspCI	CTTAAG	2 cut(s)	283, 782
MspI	CCGG	1 cut(s)	801
Mva1269I	GAATGC	2 cut(s)	391, 821
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	3 cut(s)	25, 457, 548
NlaIII	CATG	6 cut(s)	153, 165, 222, 310, 411, 624
NmuCI	GTSAC	1 cut(s)	851
NspI	RCATGY	1 cut(s)	165
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	2 cut(s)	391, 821
PflFI	GACNNNGTC	1 cut(s)	762
PkrI	GCNGC	2 cut(s)	604, 607
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	2 cut(s)	191, 254
PscI	ACATGT	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	597
PspPI	GGNCC	4 cut(s)	229, 295, 340, 367
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	25, 457
PsyI	GACNNNGTC	1 cut(s)	762
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
SaqAI	TTAA	4 cut(s)	284, 582, 674, 783
SatI	GCNGC	2 cut(s)	603, 606
Sau3AI	GATC	3 cut(s)	25, 457, 548
Sau96I	GGNCC	4 cut(s)	229, 295, 340, 367
SchI	GAGTC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	4 cut(s)	229, 295, 340, 367
SmlI	CTYRAG	2 cut(s)	283, 782
SmoI	CTYRAG	2 cut(s)	283, 782
Sse9I	AATT	4 cut(s)	42, 520, 592, 826
SsiI	CCGC	5 cut(s)	81, 223, 382, 787, 856
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	18, 200
StyI	CCWWGG	1 cut(s)	746
TaiI	ACGT	3 cut(s)	193, 243, 256
TaqI	TCGA	3 cut(s)	507, 700, 757
TasI	AATT	4 cut(s)	42, 520, 592, 826
Tru1I	TTAA	4 cut(s)	284, 582, 674, 783
Tru9I	TTAA	4 cut(s)	284, 582, 674, 783
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	2 cut(s)	602, 605
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	3 cut(s)	138, 559, 721
TspGWI	ACGGA	2 cut(s)	186, 572
Tth111I	GACNNNGTC	1 cut(s)	762
Vha464I	CTTAAG	2 cut(s)	283, 782
VpaK11BI	GGWCC	4 cut(s)	229, 295, 340, 367
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	2 cut(s)	18, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.