Rmu_co8183750.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8183750.1
OG0005197
Physical Location & Seq
Forward (+)
1 .. 445
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8183750.1_g000001.1.cds

Sequence Viewer

Length: 445 bp
gtctttcgaccaagtgaatgtctacggacagatacaactagtgagttgggcactctcaaccaacggaaatctcgacagccttcctatctcagaagaaaccgtcaagtgtcataccaaagtagaaggatttgttctcacagccagtgacttgaagaaggtcctctctaaatacggcgtaatccaagacaatgattctgatcaagatcatgtggaaattagtaattctattgagggggaaagttcttctagtatgggatcagcaatccttgtagcaacagatcaagatcatggggaaattagtaattctattgagggggaaagttcttctagcctgatatcagcaattcttgtagcaacaacagcctctcgtttccgacgacgccttcgaagagcgaagcctgcattacatttagatttcgacccctctagctacaaaggaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

147

Amino Acids

15.93

Weight (kDa)

4.96

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AclWI GGATC 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 380
AgsI TTSAA 1 cut(s) 152
AhlI ACTAGT 1 cut(s) 38
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
AlwI GGATC 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AspS9I GGNCC 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 188
BclI TGATCA 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 4 cut(s) 39, 247, 328, 427
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 386
BsaBI GATNNNNATC 3 cut(s) 196, 202, 283
BsaHI GRCGYC 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 142
Bse8I GATNNNNATC 3 cut(s) 196, 202, 283
BseJI GATNNNNATC 3 cut(s) 196, 202, 283
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 5 cut(s) 197, 203, 255, 278, 284
BspCNI CTCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 386
BsrI ACTGG 1 cut(s) 142
BssMI GATC 5 cut(s) 197, 203, 255, 278, 284
BssNI GRCGYC 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 5 cut(s) 200, 206, 258, 281, 287
BstMBI GATC 5 cut(s) 197, 203, 255, 278, 284
BstMWI GCNNNNNNNGC 2 cut(s) 360, 399
BstSLI GKGCMC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 388
CviAII CATG 2 cut(s) 207, 288
CviJI RGCY 6 cut(s) 79, 141, 331, 363, 398, 430
CviKI_1 RGCY 6 cut(s) 79, 141, 331, 363, 398, 430
DdeI CTNAG 1 cut(s) 89
DpnI GATC 5 cut(s) 199, 205, 257, 280, 286
DpnII GATC 5 cut(s) 197, 203, 255, 278, 284
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 158
EcoRV GATATC 1 cut(s) 337
FaeI CATG 2 cut(s) 210, 291
FaiI YATR 4 cut(s) 112, 208, 252, 289
FatI CATG 2 cut(s) 206, 287
FbaI TGATCA 1 cut(s) 197
FblI GTMKAC 1 cut(s) 22
FspBI CTAG 4 cut(s) 39, 247, 328, 427
HgaI GACGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 2 cut(s) 210, 291
HinfI GANTC 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 92, 197, 375
Hpy188III TCNNGA 3 cut(s) 72, 201, 282
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 2 cut(s) 379, 382
HpyAV CCTTC 4 cut(s) 90, 117, 149, 393
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 399
HpyF3I CTNAG 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 2 cut(s) 210, 291
Ksp22I TGATCA 1 cut(s) 197
Kzo9I GATC 5 cut(s) 197, 203, 255, 278, 284
LguI GCTCTTC 1 cut(s) 383
LpnPI CCDG 3 cut(s) 155, 345, 412
MaeI CTAG 4 cut(s) 39, 247, 328, 427
MaeIII GTNAC 1 cut(s) 144
MalI GATC 5 cut(s) 199, 205, 257, 280, 286
MboI GATC 5 cut(s) 197, 203, 255, 278, 284
MboII GAAGA 5 cut(s) 105, 164, 235, 316, 400
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 5 cut(s) 214, 221, 295, 302, 343
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 5 cut(s) 171, 224, 305, 374, 434
MwoI GCNNNNNNNGC 2 cut(s) 360, 399
NdeII GATC 5 cut(s) 197, 203, 255, 278, 284
NlaIII CATG 2 cut(s) 210, 291
NmuCI GTSAC 1 cut(s) 144
NspV TTCGAA 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 3 cut(s) 70, 374, 383
PfeI GAWTC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 383
Sau3AI GATC 5 cut(s) 197, 203, 255, 278, 284
Sau96I GGNCC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 53
SetI ASST 2 cut(s) 160, 432
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 5 cut(s) 214, 221, 295, 302, 343
SspMI CTAG 4 cut(s) 39, 247, 328, 427
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 4 cut(s) 7, 73, 386, 418
TasI AATT 5 cut(s) 214, 221, 295, 302, 343
TfiI GAWTC 1 cut(s) 192
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspGWI ACGGA 2 cut(s) 40, 79
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 4 cut(s) 39, 247, 328, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.