Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Reverse (-)

13493595 .. 13494545

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAAATGAGAACTATGAAAGCGGAGGAGGAAGCTGAAAGGATAAGGCATGAAGCTGATGAAGCTGAAAGGATAAGGCAAAAGCATCTCCTTCAAGAGATACGGATAAATTCGTGGATGGAACGATTTAATTTGGAAAGGTTTCCGAGGGACGAAGTCCTGACAAAAATGAAAGAAAAGTGGCAAGAGAACAAAGAGGTTAATCTTGATCATGTATCGACTCTATTACCTCTTGTACCTTCGGGAAGGAATTTAGTCTGCCTGAGGATGTTCGAGAATCTGCCAGTGTTTAAAGATATGGAACGGGATGTGTTGACCGAAATTATTGAGTTGATGAAGATGGTGGAGTACTCCGAAAATACTTTGATTGTTAAAAAGGACGGACCATTGGATCGCATGTTTGTCATTACAGAAGGGACTATGGGGGTCCACACGACTAGCACGGACTCTTCTCCATCAGCAATCATTAAAGGGTCTCTTGAGGAATGGGATGTCTACGGACTTGAACAACTAAAGAGTTGGGCTCTCTCAAAAAGGGGAAATCTCAACCCCCTTCCTATCGCAAAAGAAACCGTCAAGTGTCGTACCAAAGTAGAAGGCTTTGTTCTCACAGCCCGTGACTTGAAGAAGGCGTTCTCTAAATACGGCGTAATCCAAGACAATGATTCTGATCAAGACCATATGGAAATTTCTGTTGAGAGGGAAAGTTCTTCTAGCAAGAGATCATTAATCCTTGCAACCATAAAAAATACAGCCTCTCGTTTTCGGCGACGCCTTCAAGGCATTAGATTCCGACCCCTCTGGCTACAGAGCAATATGAGAACGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

277

Amino Acids

32.28

Weight (kDa)

8.75

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	824
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	3 cut(s)	109, 250, 687
AcyI	GRCGYC	1 cut(s)	772
AfaI	GTAC	3 cut(s)	237, 350, 586
AgsI	TTSAA	4 cut(s)	95, 506, 625, 779
AluBI	AGCT	3 cut(s)	35, 56, 65
AluI	AGCT	3 cut(s)	35, 56, 65
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	399
ApoI	RAATTY	3 cut(s)	109, 250, 687
AseI	ATTAAT	1 cut(s)	728
Asp700I	GAANNNNTTC	2 cut(s)	141, 632
AspS9I	GGNCC	2 cut(s)	383, 427
AvaII	GGWCC	2 cut(s)	383, 427
AxyI	CCTNAGG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	526
BccI	CCATC	3 cut(s)	112, 334, 463
BceAI	ACGGC	1 cut(s)	661
BclI	TGATCA	2 cut(s)	208, 670
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	438, 714
BfmI	CTRYAG	1 cut(s)	806
BglI	GCCNNNNNGGC	1 cut(s)	780
BmcAI	AGTACT	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	383, 427
BmgT120I	GGNCC	2 cut(s)	383, 427
BmiI	GGNNCC	1 cut(s)	428
BmsI	GCATC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	4 cut(s)	123, 273, 313, 496
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	164, 430
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	2 cut(s)	164, 430
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	208, 391, 670, 722
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	4 cut(s)	208, 391, 670, 722
BssNI	GRCGYC	1 cut(s)	772
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	772
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	123, 273, 313, 496
BstKTI	GATC	4 cut(s)	211, 394, 673, 725
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	4 cut(s)	208, 391, 670, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 780
BstNSI	RCATGY	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	806
Bsu36I	CCTNAGG	1 cut(s)	263
BtsCI	GGATG	4 cut(s)	123, 273, 313, 496
BtsIMutI	CAGTG	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	383, 427
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	3 cut(s)	236, 349, 585
CviAII	CATG	3 cut(s)	50, 212, 397
CviJI	RGCY	8 cut(s)	35, 56, 65, 524, 600, 614, 755, 805
CviKI_1	RGCY	8 cut(s)	35, 56, 65, 524, 600, 614, 755, 805
CviQI	GTAC	3 cut(s)	236, 349, 585
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	4 cut(s)	210, 393, 672, 724
DpnII	GATC	4 cut(s)	208, 391, 670, 722
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	383, 427
Eco81I	CCTNAGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	526
FaeI	CATG	3 cut(s)	53, 215, 400
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	2 cut(s)	164, 430
FatI	CATG	3 cut(s)	49, 211, 396
FauNDI	CATATG	1 cut(s)	681
FbaI	TGATCA	2 cut(s)	208, 670
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	4 cut(s)	130, 280, 320, 503
FriOI	GRGCYC	1 cut(s)	526
FspBI	CTAG	2 cut(s)	438, 714
HgaI	GACGC	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	772
Hin1II	CATG	3 cut(s)	53, 215, 400
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	5 cut(s)	220, 277, 446, 665, 789
Hpy166II	GTNNAC	3 cut(s)	315, 430, 496
Hpy188I	TCNGA	4 cut(s)	147, 355, 670, 794
Hpy188III	TCNNGA	7 cut(s)	95, 160, 206, 243, 274, 479, 674
Hpy8I	GTNNAC	3 cut(s)	315, 430, 496
Hpy99I	CGWCG	1 cut(s)	774
HpyAV	CCTTC	8 cut(s)	101, 240, 249, 407, 563, 590, 622, 785
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	2 cut(s)	4, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 780
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	824
Hsp92I	GRCGYC	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	53, 215, 400
Ksp22I	TGATCA	2 cut(s)	208, 670
Kzo9I	GATC	4 cut(s)	208, 391, 670, 722
LpnPI	CCDG	4 cut(s)	173, 275, 297, 787
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	438, 714
MaeII	ACGT	1 cut(s)	824
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	4 cut(s)	210, 393, 672, 724
MboI	GATC	4 cut(s)	208, 391, 670, 722
MboII	GAAGA	4 cut(s)	349, 441, 637, 702
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	5 cut(s)	109, 130, 250, 321, 687
MlyI	GAGTC	2 cut(s)	214, 440
MmeI	TCCRAC	1 cut(s)	817
MroXI	GAANNNNTTC	2 cut(s)	141, 632
MseI	TTAA	6 cut(s)	129, 201, 291, 372, 468, 728
MwoI	GCNNNNNNNGC	2 cut(s)	62, 780
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	4 cut(s)	208, 391, 670, 722
NlaIII	CATG	3 cut(s)	53, 215, 400
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	766
PdmI	GAANNNNTTC	2 cut(s)	141, 632
PfeI	GAWTC	3 cut(s)	277, 665, 789
PflFI	GACNNNGTC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	214, 440
PpsI	GAGTC	2 cut(s)	214, 440
PshBI	ATTAAT	1 cut(s)	728
Psp1406I	AACGTT	1 cut(s)	824
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	383, 427
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	237, 350, 586
RsaNI	GTAC	3 cut(s)	236, 349, 585
SaqAI	TTAA	6 cut(s)	129, 201, 291, 372, 468, 728
Sau3AI	GATC	4 cut(s)	208, 391, 670, 722
Sau96I	GGNCC	2 cut(s)	383, 427
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	2 cut(s)	214, 440
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	8 cut(s)	37, 58, 67, 143, 201, 232, 241, 827
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	806
SinI	GGWCC	2 cut(s)	383, 427
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	109, 130, 250, 321, 687
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	438, 714
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	2 cut(s)	218, 273
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	5 cut(s)	109, 130, 250, 321, 687
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	277, 665, 789
Tru1I	TTAA	6 cut(s)	129, 201, 291, 372, 468, 728
Tru9I	TTAA	6 cut(s)	129, 201, 291, 372, 468, 728
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	32, 66, 75, 185, 350
TspGWI	ACGGA	4 cut(s)	118, 396, 458, 513
TspRI	CASTG	1 cut(s)	291
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	383, 427
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	3 cut(s)	109, 250, 687
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	141, 632
XspI	CTAG	2 cut(s)	438, 714
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.