Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

52782170 .. 52789491

Gene Structure 7322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAATAGAGAGGACTAGCTCAGATCCTCAGTCTATTCCAATTTCAACAATGACTCGCTCGCAAGATGAGGAAGACCCCGCTAAATCAAGACCATGTGTCAGGTGCTATATGAGTATATCAGACAAGATAACAAGCCTACTTCAATGCCTATTTTGTTCATGGTTTGCAACATATTACGACGGAGTATGCACGACAATACGTGTGATGCTAGAGATACTTGATAACTCATGGCGGAAGGTCCGAAGGAACGTAACGATACTACTTGATAACTTATGGTGGAGGGTTGATAACTTAAGGTGGAAGGTCCGAAGGAACATGAGGATACTACCTGATAACTTATGGTGGAAGGTCCGAAGCAACATAGCAAGGTGGAAGGTCCGAAGTTTATGGCGGAATGCAATAAGTGTAATAAGCTCATGGTGGGATACAATATTTGTAACATCTTGTGTGATTGCAGTCTCACAAGATCCTTTATTTTTTTATATTCCAACTATAAATGAGGAAGAAAAGTGCCTCGAAATGGACACCAAGTTGATGATTGTGTCACTCGTTTTGCGATCATTCACGGACATCATTTTCATATGGGACATTAAAAATCAAAATTATAAGGCTGCAGCAATAGCTAAGATATGGCGAGCAGTTGCAACAGACTTTTTTGCTATACTTCCCGTCCCACAAGTGTTAATAATAGTCGTCCTTTACAAACATCGAGACTTGGGATATCTGAATGTGTTTCTTTTCATCCAATATATACCAAGGATTTATCGACTTAGTCAATCGTTTGACAATCTTAAGCGGAGAAGGGACACCGGATTATGGGTCAAAGTTGCATTCAATTTTTTTCTATACATCCTTGCTTGTCATATACTTGGAGCCTCGTGGTTTTTCTTTTCTGTTCAACGAGAGATGTTATGTTGGCGCCAAACTTGTGTAGAACAGAATACATGCGGAAGTAATTTCAAGTGCAACGAAAATAGTTCGAGAAATGTCACAAAACTAGTTCAACTTTGTCCAATGAATCCACCAGATTCTACCGTATTTAATTTTGGAATATTTGAAAATCCTCTGGGAACTAGTAGCAGAACATCAATAAACTTCTCGACGAAGTTATCTTACTCTTTCTGGTGGGGAGTGCGAAATATAAGGTTTGCATACACACACACACACACACACACACACGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

396

Amino Acids

46.81

Weight (kDa)

9.39

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	921
AciI	CCGC	5 cut(s)	81, 235, 394, 799, 951
AclWI	GGATC	2 cut(s)	20, 464
AcvI	CACGTG	1 cut(s)	1183
AcyI	GRCGYC	1 cut(s)	922
AfiI	CCNNNNNNNGG	2 cut(s)	523, 819
AflII	CTTAAG	2 cut(s)	295, 794
AflIII	ACRYGT	3 cut(s)	202, 1180, 1182
AgsI	TTSAA	7 cut(s)	48, 146, 838, 902, 964, 1007, 1061
AhdI	GACNNNNNGTC	1 cut(s)	98
AhlI	ACTAGT	2 cut(s)	1000, 1076
AleI	CACNNNNGTG	1 cut(s)	1181
AluBI	AGCT	3 cut(s)	21, 417, 626
AluI	AGCT	3 cut(s)	21, 417, 626
Alw26I	GTCTC	2 cut(s)	466, 708
AlwI	GGATC	2 cut(s)	20, 464
ApeKI	GCWGC	2 cut(s)	614, 617
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	4 cut(s)	241, 307, 352, 379
AvaII	GGWCC	4 cut(s)	241, 307, 352, 379
BanI	GGYRCC	1 cut(s)	921
BarI	GAAGNNNNNNTAC	2 cut(s)	1100, 1132
BauI	CACGAG	1 cut(s)	880
BbrPI	CACGTG	1 cut(s)	1183
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	601, 629
BciVI	GTATCC	2 cut(s)	318, 421
BcoDI	GTCTC	2 cut(s)	466, 708
BcuI	ACTAGT	2 cut(s)	1000, 1076
BfaI	CTAG	4 cut(s)	18, 212, 1001, 1077
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	925
BfrI	CTTAAG	2 cut(s)	295, 794
BfuI	GTATCC	2 cut(s)	318, 421
BisI	GCNGC	2 cut(s)	615, 618
BlsI	GCNGC	2 cut(s)	616, 619
Bme18I	GGWCC	4 cut(s)	241, 307, 352, 379
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	4 cut(s)	241, 307, 352, 379
BmiI	GGNNCC	2 cut(s)	877, 923
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	81
BsaAI	YACGTR	2 cut(s)	203, 1183
BsaHI	GRCGYC	1 cut(s)	922
BsaJI	CCNNGG	1 cut(s)	758
BsaWI	WCCGGW	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 819
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	744, 852
BseLI	CCNNNNNNNGG	2 cut(s)	523, 819
BseMII	CTCAG	2 cut(s)	36, 44
BseXI	GCAGC	2 cut(s)	601, 629
BshNI	GGYRCC	1 cut(s)	921
BsiSI	CCGG	1 cut(s)	813
BslFI	GGGAC	3 cut(s)	602, 659, 821
BslI	CCNNNNNNNGG	2 cut(s)	523, 819
BsmAI	GTCTC	2 cut(s)	466, 708
BsmFI	GGGAC	3 cut(s)	602, 659, 821
BsmI	GAATGC	2 cut(s)	403, 833
Bsp143I	GATC	3 cut(s)	25, 469, 560
BspACI	CCGC	5 cut(s)	81, 235, 394, 799, 951
BspCNI	CTCAG	2 cut(s)	35, 43
BspLI	GGNNCC	2 cut(s)	877, 923
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	20, 464
BspT107I	GGYRCC	1 cut(s)	921
BspTI	CTTAAG	2 cut(s)	295, 794
BssECI	CCNNGG	1 cut(s)	758
BssMI	GATC	3 cut(s)	25, 469, 560
BssNI	GRCGYC	1 cut(s)	922
BssSI	CACGAG	1 cut(s)	880
BssT1I	CCWWGG	1 cut(s)	758
Bst2BI	CACGAG	1 cut(s)	880
Bst4CI	ACNGT	1 cut(s)	1039
BstACI	GRCGYC	1 cut(s)	922
BstAFI	CTTAAG	2 cut(s)	295, 794
BstBAI	YACGTR	2 cut(s)	203, 1183
BstC8I	GCNNGC	2 cut(s)	62, 639
BstDEI	CTNAG	4 cut(s)	22, 30, 627, 773
BstF5I	GGATG	2 cut(s)	744, 852
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	3 cut(s)	28, 472, 563
BstMAI	GTCTC	2 cut(s)	466, 708
BstMBI	GATC	3 cut(s)	25, 469, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	951
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	601, 629
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	25, 469
BstYI	RGATCY	2 cut(s)	25, 469
BsuI	GTATCC	2 cut(s)	318, 421
BtsCI	GGATG	2 cut(s)	744, 852
Cac8I	GCNNGC	2 cut(s)	62, 639
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	4 cut(s)	241, 307, 352, 379
CviAII	CATG	6 cut(s)	96, 162, 231, 319, 420, 948
CviJI	RGCY	6 cut(s)	21, 138, 417, 614, 626, 878
CviKI_1	RGCY	6 cut(s)	21, 138, 417, 614, 626, 878
DdeI	CTNAG	4 cut(s)	22, 30, 627, 773
DinI	GGCGCC	1 cut(s)	923
DpnI	GATC	3 cut(s)	27, 471, 562
DpnII	GATC	3 cut(s)	25, 469, 560
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	250, 409
Eco130I	CCWWGG	1 cut(s)	758
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	4 cut(s)	241, 307, 352, 379
Eco72I	CACGTG	1 cut(s)	1183
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	758
EgeI	GGCGCC	1 cut(s)	923
EheI	GGCGCC	1 cut(s)	923
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	6 cut(s)	99, 165, 234, 322, 423, 951
FaqI	GGGAC	3 cut(s)	602, 659, 821
FatI	CATG	6 cut(s)	95, 161, 230, 318, 419, 947
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	584
Fnu4HI	GCNGC	2 cut(s)	615, 618
FokI	GGATG	2 cut(s)	731, 839
Fsp4HI	GCNGC	2 cut(s)	615, 618
FspBI	CTAG	4 cut(s)	18, 212, 1001, 1077
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	2 cut(s)	615, 618
HaeII	RGCGCY	1 cut(s)	925
HapII	CCGG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	922
Hin1II	CATG	6 cut(s)	99, 165, 234, 322, 423, 951
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HinfI	GANTC	3 cut(s)	55, 1021, 1031
HpaII	CCGG	1 cut(s)	813
Hpy188I	TCNGA	7 cut(s)	25, 124, 245, 311, 356, 383, 729
Hpy188III	TCNNGA	4 cut(s)	90, 713, 984, 1102
Hpy99I	CGWCG	2 cut(s)	185, 1108
HpyAV	CCTTC	7 cut(s)	232, 240, 298, 306, 343, 370, 798
HpyCH4III	ACNGT	1 cut(s)	1039
HpyCH4IV	ACGT	3 cut(s)	202, 252, 1182
HpyCH4V	TGCA	9 cut(s)	170, 192, 401, 458, 617, 647, 833, 969, 1154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	4 cut(s)	22, 30, 627, 773
HpySE526I	ACGT	3 cut(s)	202, 252, 1182
Hsp92I	GRCGYC	1 cut(s)	922
Hsp92II	CATG	6 cut(s)	99, 165, 234, 322, 423, 951
HspAI	GCGC	1 cut(s)	922
KasI	GGCGCC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	25, 469, 560
LmnI	GCTCC	1 cut(s)	875
LpnPI	CCDG	6 cut(s)	88, 345, 826, 1041, 1055, 1111
Lsp1109I	GCAGC	2 cut(s)	601, 629
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	4 cut(s)	18, 212, 1001, 1077
MaeII	ACGT	3 cut(s)	202, 252, 1182
MaeIII	GTNAC	4 cut(s)	253, 439, 546, 991
MalI	GATC	3 cut(s)	27, 471, 562
MboI	GATC	3 cut(s)	25, 469, 560
MboII	GAAGA	2 cut(s)	86, 518
MflI	RGATCY	2 cut(s)	25, 469
MluCI	AATT	5 cut(s)	42, 604, 838, 958, 1045
Mly113I	GGCGCC	1 cut(s)	922
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	9 cut(s)	6, 39, 64, 276, 315, 496, 527, 889, 1077
MseI	TTAA	5 cut(s)	296, 594, 686, 795, 1044
MslI	CAYNNNNRTG	1 cut(s)	1181
MspCI	CTTAAG	2 cut(s)	295, 794
MspI	CCGG	1 cut(s)	813
Mva1269I	GAATGC	2 cut(s)	403, 833
MwoI	GCNNNNNNNGC	1 cut(s)	623
NarI	GGCGCC	1 cut(s)	922
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	3 cut(s)	25, 469, 560
NlaIII	CATG	6 cut(s)	99, 165, 234, 322, 423, 951
NlaIV	GGNNCC	2 cut(s)	877, 923
NmuCI	GTSAC	2 cut(s)	546, 991
NspI	RCATGY	1 cut(s)	951
OliI	CACNNNNGTG	1 cut(s)	1181
PctI	GAATGC	2 cut(s)	403, 833
PfeI	GAWTC	2 cut(s)	1021, 1031
PflFI	GACNNNGTC	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	616, 619
PleI	GAGTC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	925
PmaCI	CACGTG	1 cut(s)	1183
PmlI	CACGTG	1 cut(s)	1183
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	2 cut(s)	203, 1183
PsiI	TTATAA	1 cut(s)	609
PspCI	CACGTG	1 cut(s)	1183
PspN4I	GGNNCC	2 cut(s)	877, 923
PspPI	GGNCC	4 cut(s)	241, 307, 352, 379
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	2 cut(s)	25, 469
PsyI	GACNNNGTC	1 cut(s)	774
RseI	CAYNNNNRTG	1 cut(s)	1181
SaqAI	TTAA	5 cut(s)	296, 594, 686, 795, 1044
SatI	GCNGC	2 cut(s)	615, 618
Sau3AI	GATC	3 cut(s)	25, 469, 560
Sau96I	GGNCC	4 cut(s)	241, 307, 352, 379
SchI	GAGTC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	615
SfoI	GGCGCC	1 cut(s)	923
SinI	GGWCC	4 cut(s)	241, 307, 352, 379
SmiMI	CAYNNNNRTG	1 cut(s)	1181
SmlI	CTYRAG	2 cut(s)	295, 794
SmoI	CTYRAG	2 cut(s)	295, 794
SpeI	ACTAGT	2 cut(s)	1000, 1076
Sse9I	AATT	5 cut(s)	42, 604, 838, 958, 1045
SsiI	CCGC	5 cut(s)	81, 235, 394, 799, 951
SspDI	GGCGCC	1 cut(s)	921
SspI	AATATT	2 cut(s)	435, 1056
SspMI	CTAG	4 cut(s)	18, 212, 1001, 1077
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	1 cut(s)	1039
TaiI	ACGT	3 cut(s)	205, 255, 1185
TaqI	TCGA	5 cut(s)	519, 712, 769, 983, 1103
TasI	AATT	5 cut(s)	42, 604, 838, 958, 1045
TfiI	GAWTC	2 cut(s)	1021, 1031
Tru1I	TTAA	5 cut(s)	296, 594, 686, 795, 1044
Tru9I	TTAA	5 cut(s)	296, 594, 686, 795, 1044
TseFI	GTSAC	2 cut(s)	546, 991
TseI	GCWGC	2 cut(s)	614, 617
Tsp45I	GTSAC	2 cut(s)	546, 991
TspDTI	ATGAA	4 cut(s)	150, 571, 733, 1034
TspGWI	ACGGA	2 cut(s)	198, 584
Tth111I	GACNNNGTC	1 cut(s)	774
Vha464I	CTTAAG	2 cut(s)	295, 794
VpaK11BI	GGWCC	4 cut(s)	241, 307, 352, 379
XceI	RCATGY	1 cut(s)	951
XspI	CTAG	4 cut(s)	18, 212, 1001, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.