Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007589.1

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Reverse (-)

49150 .. 50085

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007589.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgaaagcggaggcggagaaggaagctgaaaggataaggcatgaagctgatgaagctgatgaagctgaaaggataaggcaagagatacgtatatattcgtggatggaacgatttaattcgtatcggtttccgatggacgaagtcctgacaaaaatgaaagaaaagtggcaggagaacaaagaggttaatcttgatcatgtatcgactctattatctcttgtaccttcggagaggaatttagtctgcctgagcatgttagagaatctgccagtgtttaaagatatgaaacgggatgtgttgaccgaaattattgagttgatgaagatggtggagtactccgaaaatactttgattgttaaaaacgacggaccattggatcgcatgtttgtcattacagaagggactatgggggtccacacgactagcacggactcttctccatcagcaatcattaaagggtctcttgaggaatggaatgtctacggagttgagcaactactgagttgggcactctcaaccaacggaaatctcgactgccttcctatctcaaaagagaccgtcaagtgtcataccaaagtagaaggctttgttctcgaagcccgtgacttgaagaaggcgttctctaaatacggcgtaatccgagacaatgattctgatcaagatcatgaggaaatttctattgagaaggaaagttcttctagcaagagatcatcaatccttgcaccgataaaaaatacagcctctcgttttcggcgacgccttcaaggcataagattccgacccctctggctacagaggaatatgagaacgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

271

Amino Acids

31.49

Weight (kDa)

5.73

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	8, 14
AclI	AACGTT	1 cut(s)	809
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	235, 672
AcyI	GRCGYC	1 cut(s)	757
AfaI	GTAC	2 cut(s)	222, 335
AgsI	TTSAA	2 cut(s)	610, 764
AluBI	AGCT	4 cut(s)	26, 47, 56, 65
AluI	AGCT	4 cut(s)	26, 47, 56, 65
Alw26I	GTCTC	3 cut(s)	465, 548, 636
AlwI	GGATC	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	235, 672
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	2 cut(s)	368, 412
AvaII	GGWCC	2 cut(s)	368, 412
BaeGI	GKGCMC	1 cut(s)	511
BccI	CCATC	4 cut(s)	97, 127, 319, 448
BceAI	ACGGC	1 cut(s)	646
BclI	TGATCA	2 cut(s)	193, 655
BcoDI	GTCTC	3 cut(s)	465, 548, 636
BfaI	CTAG	2 cut(s)	423, 699
BfmI	CTRYAG	1 cut(s)	791
BglI	GCCNNNNNGGC	1 cut(s)	765
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	368, 412
BmgT120I	GGNCC	2 cut(s)	368, 412
BmiI	GGNNCC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	654, 660
BsaHI	GRCGYC	1 cut(s)	757
BsaI	GGTCTC	2 cut(s)	465, 548
Bse1I	ACTGG	1 cut(s)	269
Bse8I	GATNNNNATC	2 cut(s)	654, 660
BseGI	GGATG	2 cut(s)	108, 298
BseJI	GATNNNNATC	2 cut(s)	654, 660
BseMII	CTCAG	2 cut(s)	239, 491
BseNI	ACTGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	415
BsmAI	GTCTC	3 cut(s)	465, 548, 636
BsmFI	GGGAC	1 cut(s)	415
Bso31I	GGTCTC	2 cut(s)	465, 548
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	5 cut(s)	193, 376, 655, 661, 707
BspACI	CCGC	2 cut(s)	8, 14
BspCNI	CTCAG	2 cut(s)	240, 492
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	2 cut(s)	465, 548
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	5 cut(s)	193, 376, 655, 661, 707
BssNI	GRCGYC	1 cut(s)	757
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	248, 500
BstF5I	GGATG	2 cut(s)	108, 298
BstKTI	GATC	5 cut(s)	196, 379, 658, 664, 710
BstMAI	GTCTC	3 cut(s)	465, 548, 636
BstMBI	GATC	5 cut(s)	193, 376, 655, 661, 707
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 62, 765
BstNSI	RCATGY	2 cut(s)	256, 385
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	511
BstSNI	TACGTA	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	108, 298
BtsIMutI	CAGTG	1 cut(s)	276
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	368, 412
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	2 cut(s)	221, 334
CviAII	CATG	5 cut(s)	41, 197, 253, 382, 665
CviJI	RGCY	8 cut(s)	26, 47, 56, 65, 585, 599, 740, 790
CviKI_1	RGCY	8 cut(s)	26, 47, 56, 65, 585, 599, 740, 790
CviQI	GTAC	2 cut(s)	221, 334
DdeI	CTNAG	2 cut(s)	248, 500
DpnI	GATC	5 cut(s)	195, 378, 657, 663, 709
DpnII	GATC	5 cut(s)	193, 376, 655, 661, 707
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	89
Eco31I	GGTCTC	2 cut(s)	465, 548
Eco47I	GGWCC	2 cut(s)	368, 412
FaeI	CATG	5 cut(s)	44, 200, 256, 385, 668
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	40, 196, 252, 381, 664
FbaI	TGATCA	2 cut(s)	193, 655
FblI	GTMKAC	1 cut(s)	480
FokI	GGATG	2 cut(s)	115, 305
FspBI	CTAG	2 cut(s)	423, 699
HgaI	GACGC	1 cut(s)	765
Hin1I	GRCGYC	1 cut(s)	757
Hin1II	CATG	5 cut(s)	44, 200, 256, 385, 668
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	205, 262, 431, 650, 774
Hpy166II	GTNNAC	3 cut(s)	300, 415, 481
Hpy188I	TCNGA	6 cut(s)	132, 229, 340, 641, 655, 779
Hpy188III	TCNNGA	7 cut(s)	145, 191, 464, 530, 593, 659, 665
Hpy8I	GTNNAC	3 cut(s)	300, 415, 481
Hpy99I	CGWCG	2 cut(s)	368, 759
HpyAV	CCTTC	8 cut(s)	13, 234, 392, 548, 575, 607, 679, 770
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	88, 809
HpyCH4V	TGCA	1 cut(s)	722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 62, 765
HpyF3I	CTNAG	2 cut(s)	248, 500
HpySE526I	ACGT	2 cut(s)	88, 809
Hsp92I	GRCGYC	1 cut(s)	757
Hsp92II	CATG	5 cut(s)	44, 200, 256, 385, 668
Ksp22I	TGATCA	2 cut(s)	193, 655
Kzo9I	GATC	5 cut(s)	193, 376, 655, 661, 707
LpnPI	CCDG	5 cut(s)	155, 158, 260, 282, 772
MaeI	CTAG	2 cut(s)	423, 699
MaeII	ACGT	2 cut(s)	88, 809
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	5 cut(s)	195, 378, 657, 663, 709
MboI	GATC	5 cut(s)	193, 376, 655, 661, 707
MboII	GAAGA	4 cut(s)	334, 426, 622, 687
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	4 cut(s)	115, 235, 306, 672
MlyI	GAGTC	2 cut(s)	199, 425
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	8 cut(s)	4, 175, 225, 460, 661, 751, 789, 794
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	5 cut(s)	114, 186, 276, 357, 453
MwoI	GCNNNNNNNGC	3 cut(s)	53, 62, 765
NdeII	GATC	5 cut(s)	193, 376, 655, 661, 707
NlaIII	CATG	5 cut(s)	44, 200, 256, 385, 668
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	602
NspI	RCATGY	2 cut(s)	256, 385
PagI	TCATGA	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	2 cut(s)	528, 751
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	262, 650, 774
PflFI	GACNNNGTC	1 cut(s)	140
PleI	GAGTC	2 cut(s)	199, 425
PpsI	GAGTC	2 cut(s)	199, 425
Ppu21I	YACGTR	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	809
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	2 cut(s)	368, 412
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	222, 335
RsaNI	GTAC	2 cut(s)	221, 334
SaqAI	TTAA	5 cut(s)	114, 186, 276, 357, 453
Sau3AI	GATC	5 cut(s)	193, 376, 655, 661, 707
Sau96I	GGNCC	2 cut(s)	368, 412
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	199, 425
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	8 cut(s)	28, 49, 58, 67, 91, 186, 226, 812
SfcI	CTRYAG	1 cut(s)	791
SinI	GGWCC	2 cut(s)	368, 412
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SnaBI	TACGTA	1 cut(s)	89
Sse9I	AATT	4 cut(s)	115, 235, 306, 672
SsiI	CCGC	2 cut(s)	8, 14
SspMI	CTAG	2 cut(s)	423, 699
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	2 cut(s)	91, 812
TaqI	TCGA	3 cut(s)	203, 531, 594
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	115, 235, 306, 672
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	262, 650, 774
Tru1I	TTAA	5 cut(s)	114, 186, 276, 357, 453
Tru9I	TTAA	5 cut(s)	114, 186, 276, 357, 453
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	7 cut(s)	17, 57, 66, 75, 170, 299, 335
TspGWI	ACGGA	4 cut(s)	381, 443, 498, 537
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	368, 412
XapI	RAATTY	2 cut(s)	235, 672
XceI	RCATGY	2 cut(s)	256, 385
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	2 cut(s)	423, 699
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.