Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

54128832 .. 54129947

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAAGCGGAGGAGGAAGCTGAAAGGATAAGGCAAATGCTGACACGGATAAATTCGTGGATGGACCGAGTTGATTTCCCTCCCCGGGTGAAGGAAGAAGTCCAGACCAAAATTCAAGAAAAGTTGCAAGAAAACAAAAAGGCTAACATTTATAATGTATTGACTCTATTATCTTTTGTACCTTCGTACTACCGCGAAGATGGAAAGAGTGATGTCTGCGTGACGACGTTAAAGAAGCTGCCAGTTTTTAAAGAAGGGACTATGAGGGTCTACAGGACTAGCACGGACCCTTCTCCATCAGCAATCATTCTAGGGTCTCTTGACGAATGGAATGTCTACGGAGCTGGACAACTACTGAGTTGGGCACCCTCAACCAACGGAAATCTCGACCGCCTTCCTATCTCAAACGAGACCGTCAAGTGTCATACCAAAGTAGAAGGCTTTGTTCTCACAGCCAGCAACTTGAAGAGAGTGTACAATGAATGCGGCCTAATCGAAGACAATAATTCTGATCAAGATCACTTGGGAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGCCTGAGATCAGCCTCTCTTTTTCGGCGACACCTTCAAAGAGTGAAGCCTGCATTAGATATCGACCCCTCTAGCTACAAAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

216

Amino Acids

24.46

Weight (kDa)

6.85

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	364
AccI	GTMKAC	2 cut(s)	270, 336
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	8, 193, 391, 486
AcsI	RAATTY	2 cut(s)	52, 111
AfaI	GTAC	3 cut(s)	180, 188, 476
AfiI	CCNNNNNNNGG	2 cut(s)	85, 91
AgsI	TTSAA	3 cut(s)	116, 466, 599
AluBI	AGCT	4 cut(s)	20, 238, 344, 636
AluI	AGCT	4 cut(s)	20, 238, 344, 636
Alw26I	GTCTC	2 cut(s)	321, 404
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	52, 111
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AspS9I	GGNCC	2 cut(s)	64, 286
AsuC2I	CCSGG	2 cut(s)	85, 86
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	64, 286
BaeGI	GKGCMC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	55, 194, 304
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	2 cut(s)	85, 86
BcoDI	GTCTC	2 cut(s)	321, 404
BfaI	CTAG	4 cut(s)	279, 311, 561, 633
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	2 cut(s)	239, 487
BlsI	GCNGC	2 cut(s)	240, 488
Bme1390I	CCNGG	2 cut(s)	85, 86
Bme18I	GGWCC	2 cut(s)	64, 286
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	64, 286
BmiI	GGNNCC	2 cut(s)	288, 366
BmrFI	CCNGG	2 cut(s)	85, 86
BpiI	GAAGAC	1 cut(s)	504
BpuMI	CCSGG	2 cut(s)	85, 86
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	2 cut(s)	321, 404
BsaJI	CCNNGG	2 cut(s)	83, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 91
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	83, 84
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	85, 91
BseMII	CTCAG	2 cut(s)	347, 557
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	489
BshNI	GGYRCC	1 cut(s)	364
BsiEI	CGRYCG	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	85, 91
BsmAI	GTCTC	2 cut(s)	321, 404
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	489
Bso31I	GGTCTC	2 cut(s)	321, 404
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	511, 517, 569
BspACI	CCGC	4 cut(s)	8, 193, 391, 486
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	2 cut(s)	348, 558
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	288, 366
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	2 cut(s)	321, 404
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	83, 84
BssMI	GATC	3 cut(s)	511, 517, 569
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	457, 612
BstDEI	CTNAG	2 cut(s)	356, 566
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	3 cut(s)	514, 520, 572
BstMAI	GTCTC	2 cut(s)	321, 404
BstMBI	GATC	3 cut(s)	511, 517, 569
BstMCI	CGRYCG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	83, 84
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	457, 612
Cfr13I	GGNCC	2 cut(s)	64, 286
Cfr9I	CCCGGG	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	179, 187, 475
CviQI	GTAC	3 cut(s)	179, 187, 475
DdeI	CTNAG	2 cut(s)	356, 566
DpnI	GATC	3 cut(s)	513, 519, 571
DpnII	GATC	3 cut(s)	511, 517, 569
DraI	TTTAAA	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco31I	GGTCTC	2 cut(s)	321, 404
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	64, 286
Eco88I	CYCGRG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	622
FaiI	YATR	3 cut(s)	153, 263, 426
FaqI	GGGAC	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	2 cut(s)	270, 336
Fnu4HI	GCNGC	2 cut(s)	239, 487
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	239, 487
FspBI	CTAG	4 cut(s)	279, 311, 561, 633
GluI	GCNGC	2 cut(s)	239, 487
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	271, 337, 475
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	5 cut(s)	103, 116, 320, 386, 515
Hpy8I	GTNNAC	3 cut(s)	271, 337, 475
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	7 cut(s)	85, 192, 248, 300, 404, 431, 605
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	127, 614
HpyF3I	CTNAG	2 cut(s)	356, 566
HpySE526I	ACGT	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	511, 517, 569
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	8 cut(s)	98, 116, 255, 259, 330, 469, 578, 624
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	4 cut(s)	279, 311, 561, 633
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	513, 519, 571
MboI	GATC	3 cut(s)	511, 517, 569
MboII	GAAGA	5 cut(s)	107, 209, 478, 509, 549
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	5 cut(s)	52, 111, 505, 528, 535
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	8 cut(s)	4, 7, 90, 258, 379, 538, 586, 640
MseI	TTAA	2 cut(s)	230, 249
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	85, 86
Mva1269I	GAATGC	1 cut(s)	488
MvnI	CGCG	1 cut(s)	195
NciI	CCSGG	2 cut(s)	85, 86
NdeII	GATC	3 cut(s)	511, 517, 569
NlaIV	GGNNCC	2 cut(s)	288, 366
NmuCI	GTSAC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	240, 488
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	288, 366
PspPI	GGNCC	2 cut(s)	64, 286
RsaI	GTAC	3 cut(s)	180, 188, 476
RsaNI	GTAC	3 cut(s)	179, 187, 475
SaqAI	TTAA	2 cut(s)	230, 249
SatI	GCNGC	2 cut(s)	239, 487
Sau3AI	GATC	3 cut(s)	511, 517, 569
Sau96I	GGNCC	2 cut(s)	64, 286
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	85, 86
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	22, 184, 230, 240, 346, 597, 638
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	2 cut(s)	64, 286
SmaI	CCCGGG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	52, 111, 505, 528, 535
SsiI	CCGC	4 cut(s)	8, 193, 391, 486
SspMI	CTAG	4 cut(s)	279, 311, 561, 633
StyD4I	CCNGG	2 cut(s)	83, 84
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	387, 495, 624
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	52, 111, 505, 528, 535
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	230, 249
Tru9I	TTAA	2 cut(s)	230, 249
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	17, 495
TspGWI	ACGGA	4 cut(s)	61, 299, 354, 393
TspMI	CCCGGG	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	64, 286
XapI	RAATTY	2 cut(s)	52, 111
XmaI	CCCGGG	1 cut(s)	84
XmiI	GTMKAC	2 cut(s)	270, 336
XspI	CTAG	4 cut(s)	279, 311, 561, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.