Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

17629269 .. 17630210

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG084400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGTGCATACATAGTTATAAGTATACCTTATAGTGGAACTGATCTAGCCAGCTTCTTCTTTGTCGTGAGACAGACATTTATGCAAATGAGCACTATGAAAGCGGAGGAGGAAACTAAAAGGATAAGGCATGAAGCTGAAAGGATAAGGCTAATGTTGACATTGATAAATTCGCGGATGGACCAACTTAATTTCTCTCGGGATGTGAGGAGTGAACTGGAGAAAAAATTGAAAGAAAGGTTGCAAGAAAACAAAGAGCCTAATCCTGATAATGTATGGACTCTATTATCTTTTGTACCTTCGCACCGCCGCAAATGGGTGGAGTGTAACATCTGCGAGATGGCGGTAAAGAATCTGCCAGTGTTTAAAGATATGAAACGGCCTGTGTTGTACGAAATTTCTGTGTTGATGCAGAGAGTGGAGTACCCCAAAAAGACTTTAATTGTTGAAAAGAACAAATCATTAGATCGCATGGTTGTCATTACAGAAGGTAAAATGGGGATTTACGCAAACACGGGCTATTCTCCATCATCAACCATTGAAGGGTCTATTGAGGAATTTAGTGTCTACGGACATGACCAACTAGTGAGTTGGATATTCTCAGCCGACGCAAATCTCATCTCAAAAGAAACCGTCAAGTGTCATACCAAAGTAGAAGGATTTTTTCTCACAGCTGGTGACTTGAAGAGTGTGCTCTTTAGACTCGGCGTAATACCTGTAGCAGCCAAAGACTCTCATTTCCGGCGACCCATTCGAAGAGCGAAGGCTGCATTACATTTAGATTTCGACCCCTCTAGCTACAGAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

270

Amino Acids

31.23

Weight (kDa)

9.25

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AccI	GTMKAC	2 cut(s)	25, 567
AccII	CGCG	1 cut(s)	175
AciI	CCGC	5 cut(s)	104, 175, 307, 310, 344
AcsI	RAATTY	3 cut(s)	169, 396, 557
AfaI	GTAC	3 cut(s)	297, 392, 425
AfiI	CCNNNNNNNGG	3 cut(s)	35, 316, 543
AgsI	TTSAA	4 cut(s)	232, 449, 542, 685
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	4 cut(s)	54, 137, 674, 798
AluI	AGCT	4 cut(s)	54, 137, 674, 798
Alw21I	GWGCWC	2 cut(s)	95, 696
Alw26I	GTCTC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	722, 767
ApoI	RAATTY	3 cut(s)	169, 396, 557
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	689
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	95, 696
BbvI	GCAGC	2 cut(s)	734, 754
BccI	CCATC	3 cut(s)	172, 334, 535
BceAI	ACGGC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	3 cut(s)	47, 584, 795
BfmI	CTRYAG	2 cut(s)	717, 799
BisI	GCNGC	3 cut(s)	310, 723, 768
BlsI	GCNGC	3 cut(s)	311, 724, 769
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 316, 543
Bse1I	ACTGG	2 cut(s)	222, 359
BseGI	GGATG	2 cut(s)	183, 208
BseLI	CCNNNNNNNGG	3 cut(s)	35, 316, 543
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	2 cut(s)	222, 359
BseRI	GAGGAG	2 cut(s)	122, 223
BseXI	GCAGC	2 cut(s)	734, 754
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	95, 696
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	742
BslI	CCNNNNNNNGG	3 cut(s)	35, 316, 543
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	95, 696
Bsp143I	GATC	2 cut(s)	43, 466
BspACI	CCGC	5 cut(s)	104, 175, 307, 310, 344
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	614
BspFNI	CGCG	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	751
BspT104I	TTCGAA	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	222, 359
BssMI	GATC	2 cut(s)	43, 466
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	2 cut(s)	680, 751
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	183, 208
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	46, 469
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	43, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstSFI	CTRYAG	2 cut(s)	717, 799
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	734, 754
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	183, 208
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	296, 391, 424
CviAII	CATG	3 cut(s)	131, 472, 575
CviQI	GTAC	3 cut(s)	296, 391, 424
DdeI	CTNAG	1 cut(s)	601
DpnI	GATC	2 cut(s)	45, 468
DpnII	GATC	2 cut(s)	43, 466
DraI	TTTAAA	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	680, 751
EarI	CTCTTC	2 cut(s)	680, 751
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	198
FaeI	CATG	3 cut(s)	134, 475, 578
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	3 cut(s)	130, 471, 574
FblI	GTMKAC	2 cut(s)	25, 567
Fnu4HI	GCNGC	3 cut(s)	310, 723, 768
FokI	GGATG	2 cut(s)	190, 215
Fsp4HI	GCNGC	3 cut(s)	310, 723, 768
FspBI	CTAG	3 cut(s)	47, 584, 795
GluI	GCNGC	3 cut(s)	310, 723, 768
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	742
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	134, 475, 578
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	280, 352, 702, 731
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	4 cut(s)	26, 159, 215, 568
Hpy188III	TCNNGA	3 cut(s)	67, 200, 266
Hpy8I	GTNNAC	4 cut(s)	26, 159, 215, 568
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	5 cut(s)	309, 482, 536, 650, 757
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	8, 85, 244, 412, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	134, 475, 578
Kzo9I	GATC	2 cut(s)	43, 466
LguI	GCTCTTC	1 cut(s)	751
LpnPI	CCDG	8 cut(s)	64, 203, 279, 372, 396, 660, 729, 755
Lsp1109I	GCAGC	2 cut(s)	734, 754
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	47, 584, 795
MaeIII	GTNAC	2 cut(s)	326, 677
MalI	GATC	2 cut(s)	45, 468
MboI	GATC	2 cut(s)	43, 466
MboII	GAAGA	3 cut(s)	49, 697, 768
MhlI	GDGCHC	2 cut(s)	95, 696
MluCI	AATT	6 cut(s)	169, 190, 227, 396, 441, 557
MlyI	GAGTC	3 cut(s)	274, 696, 725
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	6 cut(s)	100, 103, 201, 547, 797, 802
MseI	TTAA	3 cut(s)	189, 366, 440
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	767
NdeII	GATC	2 cut(s)	43, 466
NlaIII	CATG	3 cut(s)	134, 475, 578
NmeAIII	GCCGAG	1 cut(s)	684
NmuCI	GTSAC	1 cut(s)	677
NspV	TTCGAA	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	311, 724, 769
PleI	GAGTC	3 cut(s)	274, 696, 725
PpsI	GAGTC	3 cut(s)	274, 696, 725
PsiI	TTATAA	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	297, 392, 425
RsaNI	GTAC	3 cut(s)	296, 391, 424
SapI	GCTCTTC	1 cut(s)	751
SaqAI	TTAA	3 cut(s)	189, 366, 440
SatI	GCNGC	3 cut(s)	310, 723, 768
Sau3AI	GATC	2 cut(s)	43, 466
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	3 cut(s)	274, 696, 725
SduI	GDGCHC	2 cut(s)	95, 696
SetI	ASST	9 cut(s)	31, 56, 139, 242, 301, 493, 676, 718, 800
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	2 cut(s)	717, 799
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	6 cut(s)	169, 190, 227, 396, 441, 557
SsiI	CCGC	5 cut(s)	104, 175, 307, 310, 344
SspMI	CTAG	3 cut(s)	47, 584, 795
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	2 cut(s)	754, 786
TasI	AATT	6 cut(s)	169, 190, 227, 396, 441, 557
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	3 cut(s)	189, 366, 440
Tru9I	TTAA	3 cut(s)	189, 366, 440
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	2 cut(s)	722, 767
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	3 cut(s)	113, 147, 389
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	3 cut(s)	169, 396, 557
XmiI	GTMKAC	2 cut(s)	25, 567
XspI	CTAG	3 cut(s)	47, 584, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.