Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

40624527 .. 40625171

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGGTGCCAGTTATTAAAGATATGGGTCGGCGTGTGTTGTCTGAAATTTCTGAGTTGATGGAGATAGTGGAGTACCCCGAAAATACTTTGATTGTTGAAAGGGCCGGACCCTTGGATCGCATGGTTGTCATTACAGAAGGGACTATGGGGGTCTACAAGACTAGCACGAAGCCTTCTCCATCAGCAATCATTCAAGGGTCTTTCGACCAAGGGAATTTCTACGGACATATACAACTAGTGAGTTGGGCACTCTCAACCAACGGAAATCTCGACTGCCTTCCTATCTCAGAAGAAACCGTCAAGTGTCATACCAAAGTAGAAGGATTTGTTCTCACAGCCAGTGACTTGAAGAAGGTCCTCTCTAAATACGGCGTAATCCAAGACAATGATTCTGATCAAGATTATGTGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGTATGGGATCAGCAATCCCTGTAGCAACAGATCAAGATCATGGGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGCCTGAGATCAGCAATTCTTGTAGCAACAACAGCCTCTCGTTTCCGGCGACGCCTTCGAAGAGCGAAGCCTGCATTACATTTAGATTTCGACCCCTCTAGCTACAAAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

214

Amino Acids

23.41

Weight (kDa)

5.05

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	126, 463
AcsI	RAATTY	2 cut(s)	48, 217
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	101, 197, 352
AhlI	ACTAGT	1 cut(s)	238
AluBI	AGCT	1 cut(s)	630
AluI	AGCT	1 cut(s)	630
AlwI	GGATC	2 cut(s)	126, 463
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	48, 217
AspS9I	GGNCC	3 cut(s)	105, 110, 358
AsuII	TTCGAA	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	110, 358
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	7
BccI	CCATC	2 cut(s)	55, 190
BceAI	ACGGC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	5 cut(s)	165, 239, 447, 528, 627
BfmI	CTRYAG	1 cut(s)	468
Bme18I	GGWCC	2 cut(s)	110, 358
BmgT120I	GGNCC	3 cut(s)	105, 110, 358
BmiI	GGNNCC	2 cut(s)	9, 112
Bpu14I	TTCGAA	1 cut(s)	586
BsaBI	GATNNNNATC	2 cut(s)	396, 483
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	114, 211
Bse1I	ACTGG	2 cut(s)	11, 342
Bse8I	GATNNNNATC	2 cut(s)	396, 483
BseDI	CCNNGG	2 cut(s)	114, 211
BseJI	GATNNNNATC	2 cut(s)	396, 483
BseMII	CTCAG	3 cut(s)	45, 303, 524
BseNI	ACTGG	2 cut(s)	11, 342
BseSI	GKGCMC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	108, 574
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	46, 302, 525
BspLI	GGNNCC	2 cut(s)	9, 112
BspPI	GGATC	2 cut(s)	126, 463
BspQI	GCTCTTC	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	11, 342
BssECI	CCNNGG	2 cut(s)	114, 211
BssMI	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
BssNI	GRCGYC	1 cut(s)	580
BssT1I	CCWWGG	2 cut(s)	114, 211
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	583
BstACI	GRCGYC	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	54, 289, 533
BstKTI	GATC	6 cut(s)	121, 400, 458, 481, 487, 539
BstMBI	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 599
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	105, 110, 358
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	124, 488
CviJI	RGCY	7 cut(s)	107, 175, 341, 531, 563, 598, 630
CviKI_1	RGCY	7 cut(s)	107, 175, 341, 531, 563, 598, 630
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	54, 289, 533
DpnI	GATC	6 cut(s)	120, 399, 457, 480, 486, 538
DpnII	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	114, 211
Eco47I	GGWCC	2 cut(s)	110, 358
EcoO109I	RGGNCCY	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	114, 211
ErhI	CCWWGG	2 cut(s)	114, 211
FaeI	CATG	2 cut(s)	127, 491
FaiI	YATR	9 cut(s)	26, 125, 149, 231, 233, 312, 408, 452, 489
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	123, 487
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	156
FspBI	CTAG	5 cut(s)	165, 239, 447, 528, 627
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	108, 574
HgaI	GACGC	1 cut(s)	588
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	2 cut(s)	127, 491
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	2 cut(s)	108, 574
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	46, 55, 292, 397
Hpy188III	TCNNGA	3 cut(s)	272, 401, 482
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	582
HpyAV	CCTTC	6 cut(s)	134, 186, 290, 317, 349, 593
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	4, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 599
HpyF3I	CTNAG	3 cut(s)	54, 289, 533
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	2 cut(s)	127, 491
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
LguI	GCTCTTC	1 cut(s)	583
LpnPI	CCDG	7 cut(s)	24, 121, 355, 480, 545, 587, 612
MaeI	CTAG	5 cut(s)	165, 239, 447, 528, 627
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	6 cut(s)	120, 399, 457, 480, 486, 538
MboI	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
MboII	GAAGA	5 cut(s)	305, 364, 435, 516, 600
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	7 cut(s)	48, 217, 414, 421, 495, 502, 543
MnlI	CCTC	5 cut(s)	371, 424, 505, 574, 634
MseI	TTAA	1 cut(s)	18
MspI	CCGG	2 cut(s)	108, 574
MwoI	GCNNNNNNNGC	2 cut(s)	560, 599
NdeII	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
NlaIII	CATG	2 cut(s)	127, 491
NlaIV	GGNNCC	2 cut(s)	9, 112
NmuCI	GTSAC	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 574
PfeI	GAWTC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	9, 112
PspPI	GGNCC	3 cut(s)	105, 110, 358
PspPPI	RGGWCCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	6 cut(s)	118, 397, 455, 478, 484, 536
Sau96I	GGNCC	3 cut(s)	105, 110, 358
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	3 cut(s)	9, 360, 632
SfcI	CTRYAG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	2 cut(s)	110, 358
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	7 cut(s)	48, 217, 414, 421, 495, 502, 543
SspMI	CTAG	5 cut(s)	165, 239, 447, 528, 627
StyI	CCWWGG	2 cut(s)	114, 211
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	4 cut(s)	207, 273, 586, 618
TasI	AATT	7 cut(s)	48, 217, 414, 421, 495, 502, 543
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspGWI	ACGGA	2 cut(s)	240, 279
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	110, 358
XapI	RAATTY	2 cut(s)	48, 217
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	5 cut(s)	165, 239, 447, 528, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.