Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Reverse (-)

14328236 .. 14341222

Gene Structure 12987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAAATGAAAACTATGAAAGAGGAGGAGGAAGCTAAAAAGATGAGGCAAGAAGCTGAAAGAATAAGGCAAGAGCTTCTCCATCAAGAGAGACGCATAAATTCGTGGATGCACCGACTTAATTTCCCTGGGTTTTTGAGGGAAGAAGTCGAGAGAAAAATTAAAGAAAAGTTGCATGAAAACAAAGAGGCTAATCTTGCTAATGTATTGACTCTATTATCATTTATGGATTCGGACCTCCACAGAGATGTAAAGTGGCTGATACTGGAAAATGTGCCAGTTATTAAAGATATGGGTCGGCGTGTGTTGTCTGAAATTTCTGAGTTGATGGAGATAGTGGAGTACCCCGAAAATACTTTGATTGTTGAAAGGGACGGACCATTGGATCGCATGGTTGTCATTACAGAAGGGACTATGGGGGTCTACAAGACTAGCACGAACCCTTCTCCATCAGCAATCATTCAAGGGTCTTTCGACCAGGGGAATGTCTACGGACATATACAACTAGTGAGTTGGGCACTCTCAACCAACGGAAATCTCGACTGCCTTCCTGTCTCAGAAGAAAGCGTCAAGTGTCATACCAAAGTAGAAGGATTTGTTCTCACAGCCAGTGACTTGAAGAAGGTCCTCTCTAAATACGGCGTAATCCAAGACAATGATTCTGATCAAGATCATGTGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGTATGGGATCAGCAATCCTTGTAGCAACAGATCAAGATCATGGGGAAATTAGTAATTCTATTGAGGGAGAAAGTTCTTCTAGCCTGAGATCAGCAATTCTTGTAGCAACAACAGCCTCTCGTTTCCGACGACGCCTTCGAAGAGCGAGGCCGGCATTACATTTAGATTTCGACCCCTCTAGCTACAAAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

303

Amino Acids

34.32

Weight (kDa)

5.49

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	423, 489
AclWI	GGATC	2 cut(s)	393, 730
AcsI	RAATTY	2 cut(s)	100, 315
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	368, 464, 619
AhlI	ACTAGT	1 cut(s)	505
AjnI	CCWGG	2 cut(s)	127, 477
AluBI	AGCT	4 cut(s)	35, 56, 76, 897
AluI	AGCT	4 cut(s)	35, 56, 76, 897
Alw26I	GTCTC	2 cut(s)	85, 559
AlwI	GGATC	2 cut(s)	393, 730
AoxI	GGCC	1 cut(s)	863
ApoI	RAATTY	2 cut(s)	100, 315
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AspS9I	GGNCC	3 cut(s)	235, 377, 625
AsuII	TTCGAA	1 cut(s)	853
AvaII	GGWCC	3 cut(s)	235, 377, 625
BaeGI	GKGCMC	1 cut(s)	520
BccI	CCATC	3 cut(s)	90, 322, 457
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	2 cut(s)	129, 479
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	85, 559
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	5 cut(s)	432, 506, 714, 795, 894
Bme1390I	CCNGG	2 cut(s)	129, 479
Bme18I	GGWCC	3 cut(s)	235, 377, 625
BmgT120I	GGNCC	3 cut(s)	235, 377, 625
BmrFI	CCNGG	2 cut(s)	129, 479
BmsI	GCATC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	853
BsaBI	GATNNNNATC	3 cut(s)	663, 669, 750
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	127, 128, 478
Bse118I	RCCGGY	1 cut(s)	865
Bse1I	ACTGG	3 cut(s)	270, 278, 609
Bse8I	GATNNNNATC	3 cut(s)	663, 669, 750
BseBI	CCWGG	2 cut(s)	129, 479
BseDI	CCNNGG	3 cut(s)	127, 128, 478
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	3 cut(s)	663, 669, 750
BseMII	CTCAG	3 cut(s)	312, 570, 791
BseNI	ACTGG	3 cut(s)	270, 278, 609
BseRI	GAGGAG	2 cut(s)	38, 41
BseSI	GKGCMC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	866
BslFI	GGGAC	2 cut(s)	386, 424
BsmAI	GTCTC	2 cut(s)	85, 559
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	386, 424
BsnI	GGCC	1 cut(s)	865
Bsp119I	TTCGAA	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	3 cut(s)	313, 569, 792
BspPI	GGATC	2 cut(s)	393, 730
BspQI	GCTCTTC	1 cut(s)	850
BspT104I	TTCGAA	1 cut(s)	853
BsrFI	RCCGGY	1 cut(s)	865
BsrI	ACTGG	3 cut(s)	270, 278, 609
BssAI	RCCGGY	1 cut(s)	865
BssECI	CCNNGG	3 cut(s)	127, 128, 478
BssMI	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
BssNI	GRCGYC	1 cut(s)	847
Bst2UI	CCWGG	2 cut(s)	129, 479
Bst6I	CTCTTC	1 cut(s)	850
BstACI	GRCGYC	1 cut(s)	847
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	3 cut(s)	321, 556, 800
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	7 cut(s)	388, 667, 673, 725, 748, 754, 806
BstMAI	GTCTC	2 cut(s)	85, 559
BstMBI	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 827, 866
BstNI	CCWGG	2 cut(s)	129, 479
BstSCI	CCNGG	2 cut(s)	127, 477
BstSLI	GKGCMC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	865
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	867
Cfr10I	RCCGGY	1 cut(s)	865
Cfr13I	GGNCC	3 cut(s)	235, 377, 625
CseI	GACGC	3 cut(s)	102, 556, 855
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	176, 391, 674, 755
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	321, 556, 800
DpnI	GATC	7 cut(s)	387, 666, 672, 724, 747, 753, 805
DpnII	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Eco47I	GGWCC	3 cut(s)	235, 377, 625
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	127, 477
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	179, 394, 677, 758
FaqI	GGGAC	2 cut(s)	386, 424
FatI	CATG	4 cut(s)	175, 390, 673, 754
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	423, 489
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	5 cut(s)	432, 506, 714, 795, 894
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	3 cut(s)	102, 556, 855
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	4 cut(s)	179, 394, 677, 758
HinfI	GANTC	3 cut(s)	211, 230, 659
HpaII	CCGG	1 cut(s)	866
Hpy166II	GTNNAC	2 cut(s)	424, 490
Hpy188I	TCNGA	6 cut(s)	235, 313, 322, 559, 664, 842
Hpy188III	TCNNGA	5 cut(s)	86, 151, 539, 668, 749
Hpy8I	GTNNAC	2 cut(s)	424, 490
Hpy99I	CGWCG	2 cut(s)	846, 849
HpyAV	CCTTC	6 cut(s)	401, 453, 557, 584, 616, 860
HpyCH4V	TGCA	3 cut(s)	4, 112, 175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 827, 866
HpyF3I	CTNAG	3 cut(s)	321, 556, 800
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	4 cut(s)	179, 394, 677, 758
KroI	GCCGGC	1 cut(s)	865
KroNI	GCCGGC	1 cut(s)	867
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
LguI	GCTCTTC	1 cut(s)	850
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	5 cut(s)	432, 506, 714, 795, 894
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	7 cut(s)	387, 666, 672, 724, 747, 753, 805
MboI	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
MboII	GAAGA	6 cut(s)	155, 572, 631, 702, 783, 867
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	9 cut(s)	100, 121, 159, 315, 681, 688, 762, 769, 810
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	865
MroNI	GCCGGC	1 cut(s)	865
MseI	TTAA	3 cut(s)	120, 162, 285
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	2 cut(s)	129, 479
MvaI	CCWGG	2 cut(s)	129, 479
MwoI	GCNNNNNNNGC	3 cut(s)	197, 827, 866
NaeI	GCCGGC	1 cut(s)	867
NdeII	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
NgoMIV	GCCGGC	1 cut(s)	865
NlaIII	CATG	4 cut(s)	179, 394, 677, 758
NmuCI	GTSAC	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	853
PasI	CCCWGGG	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	3 cut(s)	537, 841, 850
PdiI	GCCGGC	1 cut(s)	867
PfeI	GAWTC	2 cut(s)	230, 659
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	127, 477
PspGI	CCWGG	2 cut(s)	127, 477
PspPI	GGNCC	3 cut(s)	235, 377, 625
PspPPI	RGGWCCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	850
SaqAI	TTAA	3 cut(s)	120, 162, 285
Sau3AI	GATC	7 cut(s)	385, 664, 670, 722, 745, 751, 803
Sau96I	GGNCC	3 cut(s)	235, 377, 625
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	129, 479
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	6 cut(s)	37, 58, 78, 240, 627, 899
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	853
SinI	GGWCC	3 cut(s)	235, 377, 625
SmiMI	CAYNNNNRTG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	9 cut(s)	100, 121, 159, 315, 681, 688, 762, 769, 810
SspMI	CTAG	5 cut(s)	432, 506, 714, 795, 894
StyD4I	CCNGG	2 cut(s)	127, 477
TaqI	TCGA	5 cut(s)	150, 474, 540, 853, 885
TasI	AATT	9 cut(s)	100, 121, 159, 315, 681, 688, 762, 769, 810
TfiI	GAWTC	2 cut(s)	230, 659
Tru1I	TTAA	3 cut(s)	120, 162, 285
Tru9I	TTAA	3 cut(s)	120, 162, 285
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	23, 32, 192
TspGWI	ACGGA	3 cut(s)	390, 507, 546
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	3 cut(s)	235, 377, 625
XapI	RAATTY	2 cut(s)	100, 315
XmiI	GTMKAC	2 cut(s)	423, 489
XspI	CTAG	5 cut(s)	432, 506, 714, 795, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.