Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005197

Physical Location & Seq

Genomic Coordinates Forward (+)

56111339 .. 56112395

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAAGAGGAGGAGGAAGCTAAAAAGATGAGGCAAGAAGCTGAAAGGATAAGGCAAGAGCTTCTCCATCAAGAGAGACGCATAACTTCGTGGATGCACCGACTTAATTTCCCTGGGTTTTTGAGGGAAGAAGTCGAGAGAAAAATTAAAGAGAAGTTGCAAGAAAACAAAGAGGTTAATCTTGCTAATGTATTGACTCTATTATCATTTATGGATTCAGACCTCCACAGAGATGTAAAGTGGCTGATACTGGAAAATGTGCCAGTTATTAAAGATATGGGTCGGCGGGTGTTGTCTGAAATTTCTGAGTTGATGGAGATAGTGGAGTACCCCGAAAATACTTTGATCGTTGAAAGGGCCGGACCCTTGGATCGCATGGTTGTCATTACGGAAGGGACTATGGGGGTCTACAAGACTAGCACAAACCCTCCTCCATCAGCAATCATTCAAGGGTCTTTCGACCAAGTGAATGTCTACGGACAGATACAACTAGTGAGTTGGGCACTCTCAACCAACGGAAATCTCGACTGCCTTCCTATCTCAGAAGAAACCGTCAAGTGTCATACCAAAGTAGAAGGATTTGTTCTCACAGCCAGTGACTTGAAGAAGGTCCTCTCTAAATACGGCGTAATCCAAGACAATGATTCTGATCAAGATCATGTGGAAAGTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGTATGGGATCAGCAATCCCTGTAGCAGCAGATCAAGATCAGGGGGAAATTAGTAATTCTATTGAGGGGGAAAGTTCTTCTAGCCTGAAATCAGCAATTCTTGTAGCAACAACAGCCTCTCGTTTCCGGCGACGCCTTCGAAGAGCGAAGCCTGCATTAAATTTAGATTTCGACCCCTCTAGCTACAAAGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

298

Amino Acids

33.57

Weight (kDa)

5.2

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690 FvH4_7g18690
rosa_chinensis	RchiOBHm_Chr1g0362441 RchiOBHm_Chr1g0362461
rosa_laevigata	RLG00000027646 RLG00000027647
rosa_multiflora	Rmu_co8099662.1_g000001 Rmu_co8183750.1_g000001 Rmu_sc0001823.1_g000003 Rmu_sc0007589.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294140 Rroxscaffold_4G00294150 Rroxscaffold_4G00294160
rosa_rugosa	Rorug01G0298100
rosa_samantha	Rh1AG307400 Rh1AG307600 Rh1BG270700 Rh1CG084300 Rh1CG084400 Rh1CG288100 Rh1CG288300 Rh1DG300900
rosa_wichuraiana	Rw0G020280 Rw1G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	408, 474
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	2 cut(s)	378, 715
AcsI	RAATTY	2 cut(s)	300, 859
AcyI	GRCGYC	1 cut(s)	832
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	353, 449, 604
AhlI	ACTAGT	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	20, 41, 61, 882
AluI	AGCT	4 cut(s)	20, 41, 61, 882
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	378, 715
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	2 cut(s)	300, 859
AspS9I	GGNCC	3 cut(s)	357, 362, 610
AsuII	TTCGAA	1 cut(s)	838
AvaII	GGWCC	2 cut(s)	362, 610
BaeGI	GKGCMC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	737
BccI	CCATC	3 cut(s)	75, 307, 442
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	5 cut(s)	417, 491, 699, 780, 879
BfmI	CTRYAG	1 cut(s)	720
BisI	GCNGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	2 cut(s)	362, 610
BmgT120I	GGNCC	3 cut(s)	357, 362, 610
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	838
BsaBI	GATNNNNATC	3 cut(s)	648, 654, 735
BsaHI	GRCGYC	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	112, 113, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	3 cut(s)	255, 263, 594
Bse8I	GATNNNNATC	3 cut(s)	648, 654, 735
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	112, 113, 366
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	3 cut(s)	648, 654, 735
BseMII	CTCAG	2 cut(s)	297, 555
BseNI	ACTGG	3 cut(s)	255, 263, 594
BseRI	GAGGAG	3 cut(s)	23, 26, 420
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	737
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	360, 826
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	298, 554
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	378, 715
BspQI	GCTCTTC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	255, 263, 594
BssECI	CCNNGG	3 cut(s)	112, 113, 366
BssMI	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
BssNI	GRCGYC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	835
BstACI	GRCGYC	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	838
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	2 cut(s)	306, 541
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	7 cut(s)	348, 373, 652, 658, 710, 733, 739
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	812, 851
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	357, 362, 610
CseI	GACGC	2 cut(s)	87, 840
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	376, 659
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	306, 541
DpnI	GATC	7 cut(s)	347, 372, 651, 657, 709, 732, 738
DpnII	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	362, 610
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	2 cut(s)	379, 662
FaiI	YATR	8 cut(s)	83, 212, 278, 377, 401, 564, 660, 704
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	375, 658
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	408, 474
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	726
FspBI	CTAG	5 cut(s)	417, 491, 699, 780, 879
GluI	GCNGC	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	360, 826
HgaI	GACGC	2 cut(s)	87, 840
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	2 cut(s)	379, 662
HinfI	GANTC	3 cut(s)	196, 215, 644
HpaII	CCGG	2 cut(s)	360, 826
Hpy166II	GTNNAC	2 cut(s)	409, 475
Hpy188I	TCNGA	5 cut(s)	220, 298, 307, 544, 649
Hpy188III	TCNNGA	5 cut(s)	71, 136, 524, 653, 734
Hpy8I	GTNNAC	2 cut(s)	409, 475
Hpy99I	CGWCG	1 cut(s)	834
HpyAV	CCTTC	5 cut(s)	386, 542, 569, 601, 845
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	97, 160, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	812, 851
HpyF3I	CTNAG	2 cut(s)	306, 541
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	2 cut(s)	379, 662
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
LguI	GCTCTTC	1 cut(s)	835
Lsp1109I	GCAGC	1 cut(s)	737
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	5 cut(s)	417, 491, 699, 780, 879
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	7 cut(s)	347, 372, 651, 657, 709, 732, 738
MboI	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
MboII	GAAGA	6 cut(s)	140, 557, 616, 687, 768, 852
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	8 cut(s)	106, 144, 300, 673, 747, 754, 795, 859
MlyI	GAGTC	1 cut(s)	190
MseI	TTAA	5 cut(s)	105, 147, 177, 270, 857
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	2 cut(s)	360, 826
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	812, 851
NdeII	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
NlaIII	CATG	2 cut(s)	379, 662
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	838
PasI	CCCWGGG	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	2 cut(s)	522, 826
PfeI	GAWTC	2 cut(s)	215, 644
PkrI	GCNGC	1 cut(s)	727
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	357, 362, 610
PspPPI	RGGWCCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	5 cut(s)	105, 147, 177, 270, 857
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	7 cut(s)	345, 370, 649, 655, 707, 730, 736
Sau96I	GGNCC	3 cut(s)	357, 362, 610
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	7 cut(s)	22, 43, 63, 177, 225, 612, 884
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	838
SinI	GGWCC	2 cut(s)	362, 610
SmiMI	CAYNNNNRTG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	8 cut(s)	106, 144, 300, 673, 747, 754, 795, 859
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	5 cut(s)	417, 491, 699, 780, 879
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	5 cut(s)	135, 459, 525, 838, 870
TasI	AATT	8 cut(s)	106, 144, 300, 673, 747, 754, 795, 859
TfiI	GAWTC	2 cut(s)	215, 644
Tru1I	TTAA	5 cut(s)	105, 147, 177, 270, 857
Tru9I	TTAA	5 cut(s)	105, 147, 177, 270, 857
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	404, 492, 531
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	2 cut(s)	362, 610
XapI	RAATTY	2 cut(s)	300, 859
XmiI	GTMKAC	2 cut(s)	408, 474
XspI	CTAG	5 cut(s)	417, 491, 699, 780, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.