RchiOBHm_Chr1g0378321

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002711
Physical Location & Seq
Forward (+)
64898808 .. 64900129
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60174

Sequence Viewer

Length: 531 bp
ATGCGCGCAGTTGATAAACTAAGCCAGTATGCATCGAATGGTGGAGCACAACTAATTGTGCCTCCCGGAAAATGGCTCACCGGGAGCTTTAATCTCACTAGTTACTTTACCCTTTTCCTCCATAATGATGGTGTTATTCTTGGGTCTCAGGGGAGAGGCAGAGACGCCCCTGGTGGAAGGCGTATCAATCTCGTCTTTGGAAGCAACCTCACTGATGTCGTAACAATGGCACCATTGATGGACAAGGTGTTCCTTGGTGGGACAACTATATATATTTTGTACTTATTTGCATGTCGATGTGGATTACATTCTCGTATTATTTGCAGCAACATAACAATCCAAAGCCTCACTATCCTTGCCCCATTTAACGTTCTCAACACAGATGGGATTAACCCCGATTCATGTTCACAAACTCGTATTGAAGACTGTTACATAGTCTCGGGGGATGACTGCATTGCAGTGAAGAGTGGCTGGGATCAGGATGGAATCAACTTCGCATGCCAACCGACTAACCGAGCATCTAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

176

Amino Acids

19.07

Weight (kDa)

6.68

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 106 - 158 2.8e-11 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccII CGCG 1 cut(s) 6
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 422
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 3 cut(s) 150, 156, 442
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 324
AspLEI GCGC 2 cut(s) 6, 8
AsuC2I CCSGG 2 cut(s) 66, 82
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 439
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 336
BccI CCATC 4 cut(s) 122, 232, 377, 476
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 2 cut(s) 66, 82
BcoDI GTCTC 3 cut(s) 150, 156, 442
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 2 cut(s) 99, 522
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 66, 82, 171
BmeT110I CYCGRG 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 3 cut(s) 66, 82, 171
BmsI GCATC 2 cut(s) 41, 527
BpiI GAAGAC 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 66, 82
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 169, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 169, 253
BseGI GGATG 2 cut(s) 451, 487
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 25
BsePI GCGCGC 1 cut(s) 4
BseXI GCAGC 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 2 cut(s) 66, 81
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 3 cut(s) 150, 156, 442
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 274
Bso31I GGTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 169, 253
BssHII GCGCGC 1 cut(s) 4
BssMI GATC 1 cut(s) 475
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 6, 499
BstDEI CTNAG 2 cut(s) 20, 147
BstF5I GGATG 2 cut(s) 451, 487
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 2 cut(s) 6, 8
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 3 cut(s) 150, 156, 442
BstMBI GATC 1 cut(s) 475
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 294, 501
BstSCI CCNGG 3 cut(s) 64, 80, 169
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 451, 487
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 210, 465
Cac8I GCNNGC 2 cut(s) 6, 499
CfoI GCGC 2 cut(s) 6, 8
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 291, 402, 498
CviJI RGCY 5 cut(s) 24, 76, 87, 345, 471
CviKI_1 RGCY 5 cut(s) 24, 76, 87, 345, 471
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 20, 147
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 294, 405, 501
FaqI GGGAC 1 cut(s) 274
FatI CATG 3 cut(s) 290, 401, 497
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 2 cut(s) 458, 494
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 2 cut(s) 99, 522
GlaI GCGC 2 cut(s) 5, 7
GluI GCNGC 1 cut(s) 325
GsaI CCCAGC 1 cut(s) 475
HapII CCGG 2 cut(s) 66, 81
HgaI GACGC 1 cut(s) 173
HhaI GCGC 2 cut(s) 6, 8
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 294, 405, 501
Hin6I GCGC 2 cut(s) 4, 6
HinP1I GCGC 2 cut(s) 4, 6
HinfI GANTC 2 cut(s) 398, 486
HpaII CCGG 2 cut(s) 66, 81
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 407
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 32, 290, 324, 453, 458
HpyF3I CTNAG 2 cut(s) 20, 147
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 294, 405, 501
HspAI GCGC 2 cut(s) 4, 6
Kzo9I GATC 1 cut(s) 475
LmnI GCTCC 2 cut(s) 44, 84
LpnPI CCDG 8 cut(s) 38, 79, 94, 134, 156, 183, 457, 464
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 2 cut(s) 41, 527
MaeI CTAG 2 cut(s) 99, 522
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 101, 220, 428
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 2 cut(s) 434, 475
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 54
MnlI CCTC 5 cut(s) 72, 128, 149, 218, 356
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 3 cut(s) 90, 366, 390
MslI CAYNNNNRTG 3 cut(s) 126, 295, 458
MspI CCGG 2 cut(s) 66, 81
MspR9I CCNGG 3 cut(s) 66, 82, 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 6
NciI CCSGG 2 cut(s) 66, 82
NdeII GATC 1 cut(s) 475
NlaIII CATG 3 cut(s) 294, 405, 501
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 294, 501
PaeI GCATGC 1 cut(s) 501
PauI GCGCGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 398, 486
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 231
PteI GCGCGC 1 cut(s) 4
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 3 cut(s) 126, 295, 458
SaqAI TTAA 3 cut(s) 90, 366, 390
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 1 cut(s) 475
ScrFI CCNGG 3 cut(s) 66, 82, 171
SduI GDGCHC 1 cut(s) 49
SetI ASST 4 cut(s) 89, 210, 249, 372
SfaNI GCATC 2 cut(s) 41, 527
SmiMI CAYNNNNRTG 3 cut(s) 126, 295, 458
SpeI ACTAGT 1 cut(s) 98
SphI GCATGC 1 cut(s) 501
Sse9I AATT 1 cut(s) 54
SspMI CTAG 2 cut(s) 99, 522
StyD4I CCNGG 3 cut(s) 64, 80, 169
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 35, 295
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 398, 486
Tru1I TTAA 3 cut(s) 90, 366, 390
Tru9I TTAA 3 cut(s) 90, 366, 390
TscAI CASTG 2 cut(s) 217, 465
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 2 cut(s) 217, 465
XceI RCATGY 2 cut(s) 294, 501
XspI CTAG 2 cut(s) 99, 522
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.