Rmu_sc0001017.1_g000009

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001017.1
Physical Location & Seq
Forward (+)
47690 .. 49578
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001017.1_g000009.1.cds

Sequence Viewer

Length: 1392 bp
atgagaaaattacaggttgctactattgttatactgggattactattcctgcaagcggcagaatgtagagtagagaatattaaggatgcagttacgtactccgccattaactgccggaagcacagtgctcttttgactgatttcggagccgttggcgatggaaagacattgaacacaaaggcttttaaagatgcagttgataaactaagccagtatgcatctgatggcggagcacagctaattgtgccccccggtaactggcttaccggaagcttcaacctcacaagccactttacccttttcctccataaggatgctgttattcttgggtctcaggatgagtccgagtggcctcttcttccagcactgccttcatacgggcaagggagagaggcccctggtggaaggttaagcagtctaatctttggaacaaacctttccgatgtcgtaattacaggtaacaatggcaccattgatgggcaaggtgctccatggtgggacaaattcaagaagggtcttttgaaagtcacccgaccatacttggttgatattatgtactctaatcagatccaaatctccaatctcacttttcgtaattctccatcctggcacatccatcccatttacagcagtaacattactatacagggcctcacaatccttgcacccgttaccgttcctaacacagatggtattgaccccgactcgtgttcacaaactcgaattgaagactgttacatagtctccggggatgactgcattgcagtgaagagtggctgggatcagcatggaatcaaatttcgaatgccaaccaagcatcttgttattaggaggcttacctgtatttcacctaaaagtgctaccgttgccctaggcagtgaaatgtctggtggaatcagggatgtaagagttgaagatgtgacagccattaacaccgaatccagcattaggatcaaaacatctgtaggcagaggagcttatgtaaaagacatttatgtacgaagaatgacgttgaacactatgaagttcgttttttggatgacaggcgcctatggttcacatccaggcgagggttttgatccaaaggcacttcctgtgattcaaaacatcaactatagagaggttgttgctgagaatgttacaatgccggcccagttggatggaattgctagtgatcctttcaagggaatttgcatctctaatgtgagtatctcactcactgaaaagccaaagaaattgttgtggaactgtactgatgttgagggcgttacgagcaatgtgactccgaaggcttgcgattcgttgcccgagcagcaaaaaccaatcgattgtgctttccctgaggataagttagccattgagggcgttaagctgaccacttgttctgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

50.47

Weight (kDa)

7.05

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 467, 1046
AciI CCGC 3 cut(s) 56, 102, 228
AclWI GGATC 5 cut(s) 562, 789, 959, 1073, 1169
AcsI RAATTY 3 cut(s) 503, 797, 1188
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 4 cut(s) 98, 557, 999, 1252
AfiI CCNNNNNNNGG 8 cut(s) 55, 258, 310, 377, 477, 948, 1070, 1184
AgsI TTSAA 9 cut(s) 172, 277, 508, 523, 728, 914, 1015, 1103, 1183
AjnI CCWGG 3 cut(s) 397, 605, 1063
AluBI AGCT 4 cut(s) 238, 273, 977, 1372
AluI AGCT 4 cut(s) 238, 273, 977, 1372
Alw21I GWGCWC 3 cut(s) 130, 235, 490
Alw26I GTCTC 2 cut(s) 336, 748
AlwI GGATC 5 cut(s) 562, 789, 959, 1073, 1169
Ama87I CYCGRG 1 cut(s) 1307
AoxI GGCC 4 cut(s) 350, 393, 649, 1149
ApeKI GCWGC 1 cut(s) 1312
ApoI RAATTY 3 cut(s) 503, 797, 1188
AspA2I CCTAGG 1 cut(s) 871
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 3 cut(s) 394, 649, 1150
AsuC2I CCSGG 2 cut(s) 252, 748
AsuHPI GGTGA 2 cut(s) 520, 840
AsuII TTCGAA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 1307
AvrII CCTAGG 1 cut(s) 871
AxyI CCTNAGG 1 cut(s) 1341
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 2 cut(s) 467, 1046
BauI CACGAG 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 3 cut(s) 130, 235, 490
BbvI GCAGC 1 cut(s) 1324
BccI CCATC 7 cut(s) 152, 218, 470, 610, 624, 683, 1154
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 3 cut(s) 399, 607, 1065
BcnI CCSGG 2 cut(s) 252, 748
BcoDI GTCTC 2 cut(s) 336, 748
BfaI CTAG 2 cut(s) 872, 1170
BfmI CTRYAG 2 cut(s) 963, 1114
BfoI RGCGCY 1 cut(s) 1050
BisI GCNGC 2 cut(s) 57, 1313
BlnI CCTAGG 1 cut(s) 871
BlsI GCNGC 2 cut(s) 58, 1314
Bme1390I CCNGG 5 cut(s) 252, 399, 607, 748, 1065
BmeT110I CYCGRG 1 cut(s) 1307
BmgT120I GGNCC 3 cut(s) 394, 649, 1150
BmiI GGNNCC 4 cut(s) 148, 396, 469, 1048
BmrFI CCNGG 5 cut(s) 252, 399, 607, 748, 1065
BmrI ACTGGG 2 cut(s) 44, 1147
BmsI GCATC 6 cut(s) 76, 181, 227, 304, 826, 1203
BmuI ACTGGG 2 cut(s) 44, 1147
BpiI GAAGAC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 802
BpuMI CCSGG 2 cut(s) 252, 748
Bsa29I ATCGAT 1 cut(s) 1326
BsaAI YACGTR 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 5 cut(s) 250, 397, 491, 747, 871
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 4 cut(s) 728, 758, 966, 996
Bsc4I CCNNNNNNNGG 8 cut(s) 55, 258, 310, 377, 477, 948, 1070, 1184
Bse118I RCCGGY 1 cut(s) 1147
Bse1I ACTGG 4 cut(s) 39, 211, 263, 1153
Bse21I CCTNAGG 1 cut(s) 1341
Bse3DI GCAATG 2 cut(s) 759, 1282
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 3 cut(s) 399, 607, 1065
BseCI ATCGAT 1 cut(s) 1326
BseDI CCNNGG 5 cut(s) 250, 397, 491, 747, 871
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 8 cut(s) 55, 258, 310, 377, 477, 948, 1070, 1184
BseMI GCAATG 2 cut(s) 759, 1282
BseMII CTCAG 3 cut(s) 347, 1122, 1332
BseNI ACTGG 4 cut(s) 39, 211, 263, 1153
BseRI GAGGAG 1 cut(s) 987
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 1 cut(s) 1324
BseYI CCCAGC 1 cut(s) 777
BshFI GGCC 4 cut(s) 352, 395, 651, 1151
BshNI GGYRCC 2 cut(s) 467, 1046
BshVI ATCGAT 1 cut(s) 1326
BsiHKAI GWGCWC 3 cut(s) 130, 235, 490
BsiHKCI CYCGRG 1 cut(s) 1307
BsiSI CCGG 5 cut(s) 115, 252, 267, 747, 1148
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 8 cut(s) 55, 258, 310, 377, 477, 948, 1070, 1184
BsmAI GTCTC 2 cut(s) 336, 748
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 4 cut(s) 352, 395, 651, 1151
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 1307
Bsp119I TTCGAA 1 cut(s) 802
Bsp1286I GDGCHC 4 cut(s) 130, 235, 249, 490
Bsp143I GATC 5 cut(s) 567, 781, 951, 1078, 1174
Bsp19I CCATGG 1 cut(s) 491
BspACI CCGC 3 cut(s) 56, 102, 228
BspANI GGCC 4 cut(s) 352, 395, 651, 1151
BspCNI CTCAG 3 cut(s) 346, 1123, 1333
BspDI ATCGAT 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 148, 396, 469, 1048
BspPI GGATC 5 cut(s) 562, 789, 959, 1073, 1169
BspT104I TTCGAA 1 cut(s) 802
BspT107I GGYRCC 2 cut(s) 467, 1046
BspTNI GGTCTC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 759, 1282
BsrFI RCCGGY 1 cut(s) 1147
BsrI ACTGG 4 cut(s) 39, 211, 263, 1153
BssAI RCCGGY 1 cut(s) 1147
BssECI CCNNGG 5 cut(s) 250, 397, 491, 747, 871
BssMI GATC 5 cut(s) 567, 781, 951, 1078, 1174
BssNI GRCGYC 1 cut(s) 1047
BssSI CACGAG 1 cut(s) 706
BssT1I CCWWGG 2 cut(s) 491, 871
Bst2BI CACGAG 1 cut(s) 706
Bst2UI CCWGG 3 cut(s) 399, 607, 1065
Bst4CI ACNGT 5 cut(s) 125, 676, 734, 865, 1250
Bst6I CTCTTC 2 cut(s) 360, 764
BstACI GRCGYC 1 cut(s) 1047
BstBAI YACGTR 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 802
BstC8I GCNNGC 3 cut(s) 54, 1149, 1294
BstDEI CTNAG 4 cut(s) 206, 333, 1131, 1341
BstDSI CCRYGG 1 cut(s) 491
BstENI CCTNNNNNAGG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 5 cut(s) 570, 784, 954, 1081, 1177
BstMAI GTCTC 2 cut(s) 336, 748
BstMBI GATC 5 cut(s) 567, 781, 951, 1078, 1174
BstMWI GCNNNNNNNGC 5 cut(s) 244, 814, 866, 1272, 1312
BstNI CCWGG 3 cut(s) 399, 607, 1065
BstSCI CCNGG 5 cut(s) 250, 397, 605, 746, 1063
BstSFI CTRYAG 2 cut(s) 963, 1114
BstSLI GKGCMC 1 cut(s) 249
BstSNI TACGTA 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 1324
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 1326
Bsu36I CCTNAGG 1 cut(s) 1341
BsuRI GGCC 4 cut(s) 352, 395, 651, 1151
BsuTUI ATCGAT 1 cut(s) 1326
BtgI CCRYGG 1 cut(s) 491
BtgZI GCGATG 1 cut(s) 171
BtsI GCAGTG 3 cut(s) 365, 771, 883
BtsIMutI CAGTG 5 cut(s) 130, 365, 771, 883, 1218
Cac8I GCNNGC 3 cut(s) 54, 1149, 1294
CfoI GCGC 1 cut(s) 1049
Cfr10I RCCGGY 1 cut(s) 1147
Cfr13I GGNCC 3 cut(s) 394, 649, 1150
ClaI ATCGAT 1 cut(s) 1326
Csp6I GTAC 4 cut(s) 97, 556, 998, 1251
CviAII CATG 2 cut(s) 492, 788
CviQI GTAC 4 cut(s) 97, 556, 998, 1251
DdeI CTNAG 4 cut(s) 206, 333, 1131, 1341
DinI GGCGCC 1 cut(s) 1048
DpnI GATC 5 cut(s) 569, 783, 953, 1080, 1176
DpnII GATC 5 cut(s) 567, 781, 951, 1078, 1174
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 360, 764
EarI CTCTTC 2 cut(s) 360, 764
EciI GGCGGA 2 cut(s) 91, 243
Eco105I TACGTA 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 491, 871
Eco31I GGTCTC 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 1341
Eco88I CYCGRG 1 cut(s) 1307
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 394, 649
EcoRII CCWGG 3 cut(s) 397, 605, 1063
EcoT14I CCWWGG 2 cut(s) 491, 871
EcoT22I ATGCAT 1 cut(s) 220
EgeI GGCGCC 1 cut(s) 1048
EheI GGCGCC 1 cut(s) 1048
ErhI CCWWGG 2 cut(s) 491, 871
FaeI CATG 2 cut(s) 495, 791
FaqI GGGAC 1 cut(s) 512
FatI CATG 2 cut(s) 491, 787
Fnu4HI GCNGC 2 cut(s) 57, 1313
Fsp4HI GCNGC 2 cut(s) 57, 1313
FspBI CTAG 2 cut(s) 872, 1170
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 2 cut(s) 57, 1313
GsaI CCCAGC 1 cut(s) 781
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 4 cut(s) 352, 395, 651, 1151
HapII CCGG 5 cut(s) 115, 252, 267, 747, 1148
HhaI GCGC 1 cut(s) 1049
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 2 cut(s) 495, 791
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 8 cut(s) 341, 704, 792, 894, 938, 1099, 1282, 1298
HpaII CCGG 5 cut(s) 115, 252, 267, 747, 1148
HphI GGTGA 2 cut(s) 520, 840
Hpy166II GTNNAC 2 cut(s) 713, 1058
Hpy188I TCNGA 6 cut(s) 146, 223, 346, 442, 567, 1287
Hpy188III TCNNGA 2 cut(s) 335, 508
Hpy8I GTNNAC 2 cut(s) 713, 1058
HpyAV CCTTC 4 cut(s) 381, 399, 505, 1282
HpyCH4III ACNGT 5 cut(s) 125, 676, 734, 865, 1250
HpyCH4IV ACGT 2 cut(s) 95, 1010
HpyCH4V TGCA 8 cut(s) 52, 89, 194, 218, 665, 759, 764, 1194
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 814, 866, 1272, 1312
HpyF3I CTNAG 4 cut(s) 206, 333, 1131, 1341
HpySE526I ACGT 2 cut(s) 95, 1010
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 2 cut(s) 495, 791
HspAI GCGC 1 cut(s) 1047
KasI GGCGCC 1 cut(s) 1046
KroI GCCGGC 1 cut(s) 1147
KroNI GCCGGC 1 cut(s) 1149
Kzo9I GATC 5 cut(s) 567, 781, 951, 1078, 1174
LmnI GCTCC 4 cut(s) 146, 230, 493, 974
Lsp1109I GCAGC 1 cut(s) 1324
LweI GCATC 6 cut(s) 76, 181, 227, 304, 826, 1203
MaeI CTAG 2 cut(s) 872, 1170
MaeII ACGT 2 cut(s) 95, 1010
MalI GATC 5 cut(s) 569, 783, 953, 1080, 1176
MboI GATC 5 cut(s) 567, 781, 951, 1078, 1174
MboII GAAGA 6 cut(s) 347, 350, 740, 781, 926, 1014
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 4 cut(s) 130, 235, 249, 490
Mly113I GGCGCC 1 cut(s) 1047
MlyI GAGTC 3 cut(s) 350, 698, 1276
MmeI TCCRAC 1 cut(s) 1137
Mph1103I ATGCAT 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 1147
MseI TTAA 7 cut(s) 81, 108, 186, 410, 930, 1368, 1390
MslI CAYNNNNRTG 2 cut(s) 312, 764
MspI CCGG 5 cut(s) 115, 252, 267, 747, 1148
MspR9I CCNGG 5 cut(s) 252, 399, 607, 748, 1065
Mva1269I GAATGC 1 cut(s) 810
MvaI CCWGG 3 cut(s) 399, 607, 1065
MwoI GCNNNNNNNGC 5 cut(s) 244, 814, 866, 1272, 1312
NaeI GCCGGC 1 cut(s) 1149
NarI GGCGCC 1 cut(s) 1047
NciI CCSGG 2 cut(s) 252, 748
NcoI CCATGG 1 cut(s) 491
NdeII GATC 5 cut(s) 567, 781, 951, 1078, 1174
NgoMIV GCCGGC 1 cut(s) 1147
NlaIII CATG 2 cut(s) 495, 791
NlaIV GGNNCC 4 cut(s) 148, 396, 469, 1048
NmuCI GTSAC 3 cut(s) 526, 919, 1279
NsiI ATGCAT 1 cut(s) 220
NspV TTCGAA 1 cut(s) 802
PctI GAATGC 1 cut(s) 810
PdiI GCCGGC 1 cut(s) 1149
PfeI GAWTC 5 cut(s) 792, 894, 938, 1099, 1298
PkrI GCNGC 2 cut(s) 58, 1314
PleI GAGTC 3 cut(s) 349, 698, 1276
PluTI GGCGCC 1 cut(s) 1050
PpsI GAGTC 3 cut(s) 349, 698, 1276
Ppu21I YACGTR 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 397, 605, 1063
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 3 cut(s) 397, 605, 1063
PspN4I GGNNCC 4 cut(s) 148, 396, 469, 1048
PspPI GGNCC 3 cut(s) 394, 649, 1150
PsuI RGATCY 1 cut(s) 567
RsaI GTAC 4 cut(s) 98, 557, 999, 1252
RsaNI GTAC 4 cut(s) 97, 556, 998, 1251
RseI CAYNNNNRTG 2 cut(s) 312, 764
SaqAI TTAA 7 cut(s) 81, 108, 186, 410, 930, 1368, 1390
SatI GCNGC 2 cut(s) 57, 1313
Sau3AI GATC 5 cut(s) 567, 781, 951, 1078, 1174
Sau96I GGNCC 3 cut(s) 394, 649, 1150
SchI GAGTC 3 cut(s) 350, 698, 1276
ScrFI CCNGG 5 cut(s) 252, 399, 607, 748, 1065
SduI GDGCHC 4 cut(s) 130, 235, 249, 490
SfaNI GCATC 6 cut(s) 76, 181, 227, 304, 826, 1203
SfcI CTRYAG 2 cut(s) 963, 1114
SfoI GGCGCC 1 cut(s) 1048
SfuI TTCGAA 1 cut(s) 802
SmiMI CAYNNNNRTG 2 cut(s) 312, 764
SnaBI TACGTA 1 cut(s) 96
SsiI CCGC 3 cut(s) 56, 102, 228
SspDI GGCGCC 1 cut(s) 1046
SspI AATATT 1 cut(s) 79
SspMI CTAG 2 cut(s) 872, 1170
StyD4I CCNGG 5 cut(s) 250, 397, 605, 746, 1063
StyI CCWWGG 2 cut(s) 491, 871
TaaI ACNGT 5 cut(s) 125, 676, 734, 865, 1250
TaiI ACGT 2 cut(s) 98, 1013
TaqI TCGA 3 cut(s) 721, 802, 1326
TatI WGTACW 2 cut(s) 555, 1250
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 5 cut(s) 792, 894, 938, 1099, 1298
Tru1I TTAA 7 cut(s) 81, 108, 186, 410, 930, 1368, 1390
Tru9I TTAA 7 cut(s) 81, 108, 186, 410, 930, 1368, 1390
TscAI CASTG 5 cut(s) 130, 372, 771, 883, 1225
TseFI GTSAC 3 cut(s) 526, 919, 1279
TseI GCWGC 1 cut(s) 1312
Tsp45I GTSAC 3 cut(s) 526, 919, 1279
TspDTI ATGAA 2 cut(s) 363, 1037
TspRI CASTG 5 cut(s) 130, 372, 771, 883, 1225
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 3 cut(s) 503, 797, 1188
XmaJI CCTAGG 1 cut(s) 871
XspI CTAG 2 cut(s) 872, 1170
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.