Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002711

Physical Location & Seq

Genomic Coordinates Reverse (-)

3050880 .. 3052740

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTGAATGAGCTGAAGTGGTTGTTGACCTCTTTCTTTATGGCTCTGTTGAACGAAATTGACATTGAGAGTGACTTTGTTATTCTGATTGCTGCGCTCAATAGTTCTGAGGAGAATTATTTGGAGGTAAGTCGAGTTTTAGATGATTGTAAAGATTATTTATCTGTTTTTCAATCTGTTAAAATTCGGCATATCTACCGTGAAACAAATGGTATTGCACATAGGCTTGCACACCTTGCTATTATTTGCAGCAACATAACAATCCAAAGCCTCACTATCCTTGCCTCAGTTAACGTTCCCAACACAGATGGGATTAACCCCGATTCATGTTCACAAACTCGTATTGAAGACTGTTACATAGTCTCGGGGGATGACTGCATTGCAGTGAAGAGTGGCTGGGATCAGTATGGAATCAAATTCGGCATGCCAACCGAGCATCTTGTTATCAGGAGGCTCACCTGCATTTCACCTAAAAGTGCTACTGTTGCTCTAGGCAGTGAAATGTCCGGTGGAATCAGAGATGTTAGAGTTGAGGATGTCACAGCCATTAACACTGAATCTAGTATTAGGATCAAAACAGCTGAAGGGAGAGGGGCTTATGTCAAAGACGTCTTTGTACGACGATTAACATTGAACACTATGAAGTACCTTTTTTGGATATCAGGCGCATATGGTTCGCATCCAGACGAGGGATTTGATCCAAAGGCACTTCCTGTGATTCTAAACATCAACTACAGAGAGATTGTCGCTGAGAATGTTACCAGGCCAGCACAGTTGGATGGACTTGCTAACGACCCTTTCAAGGGAATTTGCATTTCTAATGTGAGTATCTCATTGACTGCAAAGCCTAAGGAGCTGTTGTGGAATTGTACTGATGTTGAGGGCATTACAAGCAATGTGACTCCAAAGACTTGCGATTTGTTGCCCGAGCAGCAAAACCCAGTAGATTGTGCTTTCCCTGAGGATAAGATAGCCATTGAGGATGTTAAGTTGACGAGTTGTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

336

Amino Acids

37.16

Weight (kDa)

4.9

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	17 - 79	9.2e-09	Reverse transcriptase-like
Glyco_hydro_28	PF00295	74 - 294	3.9e-24	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23900 AT3G48950
fragaria_vesca	FvH4_4g13870
malus_domestica	MD01G1208400.v1.1 MD07G1279000.v1.1
prunus_persica	Prupe.2G300900_v2.0.a1 Prupe.2G301000_v2.0.a1 Prupe.3G147400_v2.0.a1 Prupe.3G193700_v2.0.a1
pyrus_communis	pycom01g21900 pycom07g25380
rosa_chinensis	RchiOBHm_Chr1g0378321 RchiOBHm_Chr1g0378361 RchiOBHm_Chr4g0414931 RchiOBHm_Chr4g0414961
rosa_laevigata	RLG00000008108 RLG00000008109 RLG00000026441 RLG00000026442
rosa_multiflora	Rmu_sc0001017.1_g000009 Rmu_sc0004043.1_g000006
rosa_roxburghii	Rroxscaffold_4G00280510 Rroxscaffold_4G00280520 Rroxscaffold_5G00358720
rosa_rugosa	Rorug01G0408300 Rorug04G0131000
rosa_samantha	Rh1AG429700 Rh1BG387400 Rh1CG400800 Rh1DG418400 Rh4AG189700 Rh4BG188300 Rh4BG188500 Rh4CG201700 Rh4DG188500 Rh4DG189100
rosa_wichuraiana	Rw1G037600 Rw4G016180 Rw4G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
AatII	GACGTC	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	467
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	3 cut(s)	408, 578, 692
AcsI	RAATTY	3 cut(s)	183, 416, 807
AcuI	CTGAAG	2 cut(s)	35, 603
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	3 cut(s)	618, 647, 871
AfiI	CCNNNNNNNGG	3 cut(s)	689, 802, 803
AgsI	TTSAA	5 cut(s)	52, 173, 347, 634, 802
AjnI	CCWGG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	13, 581, 856
AluI	AGCT	3 cut(s)	13, 581, 856
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	3 cut(s)	408, 578, 692
Ama87I	CYCGRG	2 cut(s)	364, 926
AoxI	GGCC	1 cut(s)	764
ApeKI	GCWGC	3 cut(s)	92, 249, 931
ApoI	RAATTY	3 cut(s)	183, 416, 807
ArsI	GACNNNNNNTTYG	4 cut(s)	677, 709, 901, 933
AspLEI	GCGC	2 cut(s)	97, 668
AsuHPI	GGTGA	3 cut(s)	16, 448, 459
AvaI	CYCGRG	2 cut(s)	364, 926
AxyI	CCTNAGG	2 cut(s)	849, 960
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	79, 261, 943
BccI	CCATC	2 cut(s)	302, 773
BcgI	CGANNNNNNTGC	2 cut(s)	657, 691
BciT130I	CCWGG	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	491, 561
BfmI	CTRYAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	93, 250, 932
BlsI	GCNGC	3 cut(s)	94, 251, 933
Bme1390I	CCNGG	1 cut(s)	763
BmeT110I	CYCGRG	2 cut(s)	364, 926
BmrFI	CCNGG	1 cut(s)	763
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	2 cut(s)	445, 688
BmuI	ACTGGG	1 cut(s)	935
BpiI	GAAGAC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 802, 803
Bse1I	ACTGG	1 cut(s)	941
Bse21I	CCTNAGG	2 cut(s)	849, 960
Bse3DI	GCAATG	2 cut(s)	378, 901
BseBI	CCWGG	1 cut(s)	763
BseGI	GGATG	5 cut(s)	376, 541, 679, 784, 988
BseLI	CCNNNNNNNGG	3 cut(s)	689, 802, 803
BseMI	GCAATG	2 cut(s)	378, 901
BseMII	CTCAG	4 cut(s)	99, 300, 741, 951
BseNI	ACTGG	1 cut(s)	941
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	79, 261, 943
BseYI	CCCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	766
BsiHKCI	CYCGRG	2 cut(s)	364, 926
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	689, 802, 803
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	766
BsoBI	CYCGRG	2 cut(s)	364, 926
Bsp143I	GATC	3 cut(s)	400, 570, 697
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	4 cut(s)	100, 299, 742, 952
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	3 cut(s)	408, 578, 692
BsrDI	GCAATG	2 cut(s)	378, 901
BsrI	ACTGG	1 cut(s)	941
BssMI	GATC	3 cut(s)	400, 570, 697
BssNI	GRCGYC	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	4 cut(s)	200, 353, 484, 774
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	228, 425, 768
BstDEI	CTNAG	5 cut(s)	108, 286, 750, 849, 960
BstF5I	GGATG	5 cut(s)	376, 541, 679, 784, 988
BstHHI	GCGC	2 cut(s)	97, 668
BstKTI	GATC	3 cut(s)	403, 573, 700
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	3 cut(s)	400, 570, 697
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 433, 485, 853, 891, 931
BstNI	CCWGG	1 cut(s)	763
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	761
BstSFI	CTRYAG	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	79, 261, 943
BstV2I	GAAGAC	1 cut(s)	354
Bsu36I	CCTNAGG	2 cut(s)	849, 960
BsuRI	GGCC	1 cut(s)	766
BtsCI	GGATG	5 cut(s)	376, 541, 679, 784, 988
BtsI	GCAGTG	2 cut(s)	390, 502
BtsIMutI	CAGTG	3 cut(s)	390, 502, 552
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	3 cut(s)	228, 425, 768
CfoI	GCGC	2 cut(s)	97, 668
Csp6I	GTAC	3 cut(s)	617, 646, 870
CviAII	CATG	2 cut(s)	327, 424
CviQI	GTAC	3 cut(s)	617, 646, 870
DdeI	CTNAG	5 cut(s)	108, 286, 750, 849, 960
DpnI	GATC	3 cut(s)	402, 572, 699
DpnII	GATC	3 cut(s)	400, 570, 697
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	35, 603
Eco81I	CCTNAGG	2 cut(s)	849, 960
Eco88I	CYCGRG	2 cut(s)	364, 926
EcoRII	CCWGG	1 cut(s)	761
EcoRV	GATATC	1 cut(s)	660
FaeI	CATG	2 cut(s)	330, 427
FatI	CATG	2 cut(s)	326, 423
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	93, 250, 932
FokI	GGATG	5 cut(s)	383, 548, 666, 791, 995
Fsp4HI	GCNGC	3 cut(s)	93, 250, 932
FspBI	CTAG	2 cut(s)	491, 561
GlaI	GCGC	2 cut(s)	96, 667
GluI	GCNGC	3 cut(s)	93, 250, 932
GsaI	CCCAGC	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	2 cut(s)	97, 668
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	330, 427
Hin6I	GCGC	2 cut(s)	95, 666
HinP1I	GCGC	2 cut(s)	95, 666
HincII	GTYRAC	3 cut(s)	27, 292, 993
HindII	GTYRAC	3 cut(s)	27, 292, 993
HinfI	GANTC	6 cut(s)	323, 411, 513, 557, 718, 901
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	3 cut(s)	16, 448, 459
Hpy166II	GTNNAC	4 cut(s)	27, 292, 332, 993
Hpy188I	TCNGA	3 cut(s)	87, 109, 518
Hpy188III	TCNNGA	2 cut(s)	448, 683
Hpy8I	GTNNAC	4 cut(s)	27, 292, 332, 993
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	4 cut(s)	200, 353, 484, 774
HpyCH4IV	ACGT	2 cut(s)	294, 609
HpyCH4V	TGCA	8 cut(s)	218, 230, 249, 378, 383, 462, 813, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 433, 485, 853, 891, 931
HpyF3I	CTNAG	5 cut(s)	108, 286, 750, 849, 960
HpySE526I	ACGT	2 cut(s)	294, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	330, 427
HspAI	GCGC	2 cut(s)	95, 666
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	400, 570, 697
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	79, 261, 943
LweI	GCATC	2 cut(s)	445, 688
MaeI	CTAG	2 cut(s)	491, 561
MaeII	ACGT	2 cut(s)	294, 609
MaeIII	GTNAC	5 cut(s)	71, 353, 538, 757, 898
MalI	GATC	3 cut(s)	402, 572, 699
MboI	GATC	3 cut(s)	400, 570, 697
MboII	GAAGA	2 cut(s)	359, 400
MluCI	AATT	6 cut(s)	57, 115, 183, 416, 807, 865
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	1 cut(s)	756
MseI	TTAA	7 cut(s)	180, 291, 315, 549, 626, 987, 1009
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	763
MvaI	CCWGG	1 cut(s)	763
MwoI	GCNNNNNNNGC	6 cut(s)	236, 433, 485, 853, 891, 931
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	3 cut(s)	400, 570, 697
NlaIII	CATG	2 cut(s)	330, 427
NmuCI	GTSAC	3 cut(s)	71, 538, 898
NspI	RCATGY	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	467
PfeI	GAWTC	5 cut(s)	323, 411, 513, 557, 718
PkrI	GCNGC	3 cut(s)	94, 251, 933
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	618, 647, 871
RsaNI	GTAC	3 cut(s)	617, 646, 870
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	7 cut(s)	180, 291, 315, 549, 626, 987, 1009
SatI	GCNGC	3 cut(s)	93, 250, 932
Sau3AI	GATC	3 cut(s)	400, 570, 697
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	445, 688
SfcI	CTRYAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	6 cut(s)	57, 115, 183, 416, 807, 865
SspMI	CTAG	2 cut(s)	491, 561
StyD4I	CCNGG	1 cut(s)	761
TaaI	ACNGT	4 cut(s)	200, 353, 484, 774
TaiI	ACGT	2 cut(s)	297, 612
TaqI	TCGA	1 cut(s)	133
TasI	AATT	6 cut(s)	57, 115, 183, 416, 807, 865
TatI	WGTACW	1 cut(s)	869
TfiI	GAWTC	5 cut(s)	323, 411, 513, 557, 718
Tru1I	TTAA	7 cut(s)	180, 291, 315, 549, 626, 987, 1009
Tru9I	TTAA	7 cut(s)	180, 291, 315, 549, 626, 987, 1009
TscAI	CASTG	3 cut(s)	390, 502, 559
TseFI	GTSAC	3 cut(s)	71, 538, 898
TseI	GCWGC	3 cut(s)	92, 249, 931
Tsp45I	GTSAC	3 cut(s)	71, 538, 898
TspDTI	ATGAA	2 cut(s)	315, 656
TspRI	CASTG	3 cut(s)	390, 502, 559
XapI	RAATTY	3 cut(s)	183, 416, 807
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	2 cut(s)	491, 561
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.