Rroxscaffold_4G00280510

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
3048161 .. 3050401
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280510.1

Sequence Viewer

Length: 1422 bp
ATGGACTTAAAATCATCAGCAATGTTCCATGCTGCTGCAACCATTGTTATATTTGGATTACTATTCCTACAAGCGGCAGAATGTAGAAACGTGAAGAAGATTAAGGATGGGGTTACGTACTCCGCCATCAAATGCCGGAAGCACAGTGCTTTTTTGACTGATTTCGGTGCCGTTGGCGATGGAAAAACATTAAACACAAAGGCGTTCAAAGCTGCAGTTGATCATCTAAGCAAGTCCGCATCGAAAGGTGGAGCACAGCTCATTGATGAGTCAGAGTGGCCTATTCTTCCGGTACTGCCTTCATATGGGAGAGGTAGAGATGCCCCCGATGGAAGGTTTAGCAGTCTCATCTTTGGAACAAACCTAACCGACGTTATAATTACTGGTAACAATGGCACCATTGATGGCCAAGGTGCTTCTTGGTGGGACAAGTTCCACAAGGGTCTTATGAATGTGACTCGTCCATACTTGATTGAGATTATGTACTCTAATCACATCCAAATCTCTAATATCACTCTGATCAATTCTCCATCTTGGCATGTACACCCCATTTACAGCAGGTTTTTGACCTTTTCGTCTCCTCAATTATATATATTTCTACTTCTTTGTGTATCATTGTGCGATAACAATGTAGTATTAATCTGCAGCCATATAACAATCCAAGGGATTACTATCCTTGCACCAGTTGACGTTCCTAACACAGATGGGATTAACCCAGACTCGTGTTCACAACTTCGAATCGAAGACTGTTACATAGTATCCGGGGATGACTGCATTGCAGTGAAGAGTGGATGGGATCAGTATGGAATCAAAGTTGGAATGCCGACAGAGCATGTTGTGATCAGGAGGCTCACCTGCATTTCACCTAAAAGTGCCACCGTTGCCCTAGGCAGTGAAATGTCCGGAGGAATCAGAGACGTTAGAGTTGAGGACATCACAGCTATTAACACTGAATCCAGCATTAGGATCAAAACCGCTGTTGGAAGAGGGGCTTATGTCAAAGACATCTATGCAAGAAGAGTGACCTTGAAGACAATGAAATATGTTTTTTGGATGACAGGCGCTTATGGTTCGCATCCGAACAGTGATTTTGATCCAAATGCACTACCTGTGATTCAAAACATCAACTTTAAAGAGTTTGTGGCTGAGAATGTTACCATTCCAGCACAATTAGATGGAATTGCTAATGACCCTTTCAAGGGAATTTGCATGTCTAATGTTTCTATCTCACTTTCTGCGAATCCTACGAAACTTTTGTGGAATTGTACTGGTATTGAGGGAATTACGAGCAATGTGACTCCGAAGGCATGTGATTTGTTACTCCAGCAGCAAAAACCAGTCGATTGTGCTTTCCCCGAGGATAAGTTAGCCATTGAAGGGTTTAACTTGACGACTTGTTTTGCAGGTTTTGCTAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

51.6

Weight (kDa)

7.09

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 115 - 184 1.7e-07 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 214 - 426 1.2e-22 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AarI CACCTGC 1 cut(s) 863
AasI GACNNNNNNGTC 1 cut(s) 574
Acc36I ACCTGC 3 cut(s) 549, 863, 1394
AccB1I GGYRCC 2 cut(s) 167, 395
AccIII TCCGGA 1 cut(s) 902
AciI CCGC 4 cut(s) 74, 123, 237, 975
AclWI GGATC 3 cut(s) 804, 974, 1088
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 1203
AfaI GTAC 5 cut(s) 119, 294, 485, 543, 1267
AfiI CCNNNNNNNGG 7 cut(s) 73, 305, 333, 963, 1198, 1199, 1377
AgsI TTSAA 5 cut(s) 208, 1030, 1118, 1198, 1376
AluBI AGCT 3 cut(s) 212, 259, 941
AluI AGCT 3 cut(s) 212, 259, 941
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 3 cut(s) 350, 582, 909
AlwI GGATC 3 cut(s) 804, 974, 1088
Ama87I CYCGRG 1 cut(s) 1355
Aor13HI TCCGGA 1 cut(s) 902
AoxI GGCC 2 cut(s) 278, 406
ApeKI GCWGC 5 cut(s) 32, 35, 212, 645, 1327
ApoI RAATTY 1 cut(s) 1203
AseI ATTAAT 1 cut(s) 638
AspA2I CCTAGG 1 cut(s) 886
AspLEI GCGC 1 cut(s) 1064
AsuC2I CCSGG 1 cut(s) 763
AsuHPI GGTGA 2 cut(s) 844, 855
AsuII TTCGAA 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 1355
AvrII CCTAGG 1 cut(s) 886
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 2 cut(s) 167, 395
BauI CACGAG 1 cut(s) 721
BbsI GAAGAC 2 cut(s) 750, 1037
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 5 cut(s) 19, 22, 199, 657, 1339
BccI CCATC 9 cut(s) 101, 134, 173, 323, 398, 538, 698, 786, 1169
BceAI ACGGC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 3 cut(s) 220, 519, 840
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 3 cut(s) 350, 582, 909
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 2 cut(s) 213, 643
BfoI RGCGCY 1 cut(s) 1065
BfuAI ACCTGC 3 cut(s) 549, 863, 1394
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 6 cut(s) 33, 36, 75, 213, 646, 1328
BlnI CCTAGG 1 cut(s) 886
BlsI GCNGC 6 cut(s) 34, 37, 76, 214, 647, 1329
Bme1390I CCNGG 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 1355
BmiI GGNNCC 2 cut(s) 169, 397
BmrFI CCNGG 1 cut(s) 763
BmsI GCATC 3 cut(s) 248, 310, 1084
BpiI GAAGAC 2 cut(s) 750, 1037
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpmI CTGGAG 1 cut(s) 1307
Bpu10I CCTNAGC 1 cut(s) 1413
Bpu14I TTCGAA 1 cut(s) 736
BpuMI CCSGG 1 cut(s) 763
BsaAI YACGTR 1 cut(s) 117
BsaBI GATNNNNATC 2 cut(s) 671, 1092
BsaJI CCNNGG 5 cut(s) 409, 661, 762, 886, 1356
BsaWI WCCGGW 2 cut(s) 289, 902
Bsc4I CCNNNNNNNGG 7 cut(s) 73, 305, 333, 963, 1198, 1199, 1377
Bse1I ACTGG 4 cut(s) 388, 683, 1273, 1337
Bse3DI GCAATG 3 cut(s) 27, 774, 1297
Bse8I GATNNNNATC 2 cut(s) 671, 1092
BseAI TCCGGA 1 cut(s) 902
BseDI CCNNGG 5 cut(s) 409, 661, 762, 886, 1356
BseGI GGATG 6 cut(s) 112, 495, 772, 797, 1059, 1075
BseJI GATNNNNATC 2 cut(s) 671, 1092
BseLI CCNNNNNNNGG 7 cut(s) 73, 305, 333, 963, 1198, 1199, 1377
BseMI GCAATG 3 cut(s) 27, 774, 1297
BseMII CTCAG 1 cut(s) 1137
BseNI ACTGG 4 cut(s) 388, 683, 1273, 1337
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 5 cut(s) 19, 22, 199, 657, 1339
BshFI GGCC 2 cut(s) 280, 408
BshNI GGYRCC 2 cut(s) 167, 395
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 1355
BsiSI CCGG 4 cut(s) 136, 290, 762, 903
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 7 cut(s) 73, 305, 333, 963, 1198, 1199, 1377
BsmAI GTCTC 3 cut(s) 350, 582, 909
BsmBI CGTCTC 2 cut(s) 582, 909
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 2 cut(s) 280, 408
BsoBI CYCGRG 1 cut(s) 1355
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 902
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
BspACI CCGC 4 cut(s) 74, 123, 237, 975
BspANI GGCC 2 cut(s) 280, 408
BspCNI CTCAG 1 cut(s) 1138
BspEI TCCGGA 1 cut(s) 902
BspLI GGNNCC 2 cut(s) 169, 397
BspMAI CTGCAG 2 cut(s) 217, 647
BspMI ACCTGC 3 cut(s) 549, 863, 1394
BspPI GGATC 3 cut(s) 804, 974, 1088
BspT104I TTCGAA 1 cut(s) 736
BspT107I GGYRCC 2 cut(s) 167, 395
BsrDI GCAATG 3 cut(s) 27, 774, 1297
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 4 cut(s) 388, 683, 1273, 1337
BssECI CCNNGG 5 cut(s) 409, 661, 762, 886, 1356
BssMI GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
BssSI CACGAG 1 cut(s) 721
BssT1I CCWWGG 3 cut(s) 409, 661, 886
Bst2BI CACGAG 1 cut(s) 721
Bst4CI ACNGT 4 cut(s) 146, 749, 880, 1085
Bst6I CTCTTC 3 cut(s) 779, 979, 1012
BstAPI GCANNNNNTGC 1 cut(s) 1409
BstAUI TGTACA 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 736
BstDEI CTNAG 3 cut(s) 227, 1146, 1413
BstF5I GGATG 6 cut(s) 112, 495, 772, 797, 1059, 1075
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 1 cut(s) 1064
BstKTI GATC 6 cut(s) 223, 522, 799, 843, 969, 1096
BstMAI GTCTC 3 cut(s) 350, 582, 909
BstMBI GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 209, 829, 881, 1409
BstNSI RCATGY 4 cut(s) 542, 836, 1213, 1311
BstSCI CCNGG 1 cut(s) 761
BstSFI CTRYAG 2 cut(s) 213, 643
BstSNI TACGTA 1 cut(s) 117
BstV1I GCAGC 5 cut(s) 19, 22, 199, 657, 1339
BstV2I GAAGAC 2 cut(s) 750, 1037
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 2 cut(s) 280, 408
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 6 cut(s) 112, 495, 772, 797, 1059, 1075
BtsI GCAGTG 2 cut(s) 786, 898
BtsIMutI CAGTG 5 cut(s) 151, 786, 898, 948, 1090
BveI ACCTGC 3 cut(s) 549, 863, 1394
CfoI GCGC 1 cut(s) 1064
Csp6I GTAC 5 cut(s) 118, 293, 484, 542, 1266
CviAII CATG 5 cut(s) 29, 539, 833, 1210, 1308
CviQI GTAC 5 cut(s) 118, 293, 484, 542, 1266
DdeI CTNAG 3 cut(s) 227, 1146, 1413
DpnI GATC 6 cut(s) 222, 521, 798, 842, 968, 1095
DpnII GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
DraI TTTAAA 1 cut(s) 1132
DrdI GACNNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 779, 979, 1012
EarI CTCTTC 3 cut(s) 779, 979, 1012
EciI GGCGGA 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 409, 661, 886
Eco88I CYCGRG 1 cut(s) 1355
EcoT14I CCWWGG 3 cut(s) 409, 661, 886
ErhI CCWWGG 3 cut(s) 409, 661, 886
Esp3I CGTCTC 2 cut(s) 582, 909
FaeI CATG 5 cut(s) 32, 542, 836, 1213, 1311
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 1 cut(s) 440
FatI CATG 5 cut(s) 28, 538, 832, 1209, 1307
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 3 cut(s) 220, 519, 840
Fnu4HI GCNGC 6 cut(s) 33, 36, 75, 213, 646, 1328
FokI GGATG 6 cut(s) 119, 482, 779, 804, 1062, 1066
Fsp4HI GCNGC 6 cut(s) 33, 36, 75, 213, 646, 1328
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 1063
GluI GCNGC 6 cut(s) 33, 36, 75, 213, 646, 1328
GsuI CTGGAG 1 cut(s) 1307
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 2 cut(s) 280, 408
HapII CCGG 4 cut(s) 136, 290, 762, 903
HhaI GCGC 1 cut(s) 1064
Hin1II CATG 5 cut(s) 32, 542, 836, 1213, 1311
Hin6I GCGC 1 cut(s) 1062
HinP1I GCGC 1 cut(s) 1062
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HpaII CCGG 4 cut(s) 136, 290, 762, 903
HphI GGTGA 2 cut(s) 844, 855
Hpy166II GTNNAC 3 cut(s) 544, 688, 728
Hpy188I TCNGA 5 cut(s) 274, 519, 914, 1080, 1302
Hpy188III TCNNGA 2 cut(s) 844, 903
Hpy8I GTNNAC 3 cut(s) 544, 688, 728
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 309, 327, 1297, 1370
HpyCH4III ACNGT 4 cut(s) 146, 749, 880, 1085
HpyCH4IV ACGT 5 cut(s) 90, 116, 372, 690, 918
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 829, 881, 1409
HpyF3I CTNAG 3 cut(s) 227, 1146, 1413
HpySE526I ACGT 5 cut(s) 90, 116, 372, 690, 918
Hsp92II CATG 5 cut(s) 32, 542, 836, 1213, 1311
HspAI GCGC 1 cut(s) 1062
Kpn2I TCCGGA 1 cut(s) 902
Ksp22I TGATCA 3 cut(s) 220, 519, 840
Kzo9I GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 5 cut(s) 19, 22, 199, 657, 1339
LweI GCATC 3 cut(s) 248, 310, 1084
MaeI CTAG 1 cut(s) 887
MaeII ACGT 5 cut(s) 90, 116, 372, 690, 918
MaeIII GTNAC 8 cut(s) 112, 386, 454, 749, 1021, 1153, 1294, 1317
MalI GATC 6 cut(s) 222, 521, 798, 842, 968, 1095
MboI GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
MboII GAAGA 8 cut(s) 106, 109, 278, 755, 796, 996, 1029, 1042
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 8 cut(s) 378, 523, 584, 1169, 1179, 1203, 1261, 1281
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 4 cut(s) 278, 451, 713, 1291
MmeI TCCRAC 2 cut(s) 796, 961
MnlI CCTC 8 cut(s) 305, 591, 840, 899, 922, 980, 1270, 1351
Mox20I TGGCCA 1 cut(s) 408
MroI TCCGGA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 408
MseI TTAA 8 cut(s) 8, 102, 191, 638, 711, 945, 1131, 1383
MslI CAYNNNNRTG 1 cut(s) 779
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 4 cut(s) 136, 290, 762, 903
MspR9I CCNGG 1 cut(s) 763
Mva1269I GAATGC 1 cut(s) 825
MwoI GCNNNNNNNGC 4 cut(s) 209, 829, 881, 1409
NciI CCSGG 1 cut(s) 763
NdeI CATATG 1 cut(s) 304
NdeII GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
NlaIII CATG 5 cut(s) 32, 542, 836, 1213, 1311
NlaIV GGNNCC 2 cut(s) 169, 397
NmuCI GTSAC 3 cut(s) 454, 1021, 1294
NspI RCATGY 4 cut(s) 542, 836, 1213, 1311
NspV TTCGAA 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 863
PctI GAATGC 1 cut(s) 825
PfeI GAWTC 6 cut(s) 738, 807, 909, 953, 1114, 1240
PkrI GCNGC 6 cut(s) 34, 37, 76, 214, 647, 1329
PleI GAGTC 4 cut(s) 277, 451, 713, 1291
PpsI GAGTC 4 cut(s) 277, 451, 713, 1291
Ppu21I YACGTR 1 cut(s) 117
PshBI ATTAAT 1 cut(s) 638
PsiI TTATAA 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 169, 397
PstI CTGCAG 2 cut(s) 217, 647
RsaI GTAC 5 cut(s) 119, 294, 485, 543, 1267
RsaNI GTAC 5 cut(s) 118, 293, 484, 542, 1266
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 8 cut(s) 8, 102, 191, 638, 711, 945, 1131, 1383
SatI GCNGC 6 cut(s) 33, 36, 75, 213, 646, 1328
Sau3AI GATC 6 cut(s) 220, 519, 796, 840, 966, 1093
SchI GAGTC 4 cut(s) 278, 451, 713, 1291
ScrFI CCNGG 1 cut(s) 763
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 3 cut(s) 248, 310, 1084
SfcI CTRYAG 2 cut(s) 213, 643
SfuI TTCGAA 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 779
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 8 cut(s) 378, 523, 584, 1169, 1179, 1203, 1261, 1281
SsiI CCGC 4 cut(s) 74, 123, 237, 975
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 1 cut(s) 761
StyI CCWWGG 3 cut(s) 409, 661, 886
TaaI ACNGT 4 cut(s) 146, 749, 880, 1085
TaiI ACGT 5 cut(s) 93, 119, 375, 693, 921
TaqI TCGA 4 cut(s) 242, 736, 741, 1341
TasI AATT 8 cut(s) 378, 523, 584, 1169, 1179, 1203, 1261, 1281
TatI WGTACW 3 cut(s) 483, 541, 1265
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 6 cut(s) 738, 807, 909, 953, 1114, 1240
Tru1I TTAA 8 cut(s) 8, 102, 191, 638, 711, 945, 1131, 1383
Tru9I TTAA 8 cut(s) 8, 102, 191, 638, 711, 945, 1131, 1383
TscAI CASTG 5 cut(s) 151, 786, 898, 955, 1090
TseFI GTSAC 3 cut(s) 454, 1021, 1294
TseI GCWGC 5 cut(s) 32, 35, 212, 645, 1327
Tsp45I GTSAC 3 cut(s) 454, 1021, 1294
TspDTI ATGAA 3 cut(s) 291, 464, 1052
TspRI CASTG 5 cut(s) 151, 786, 898, 955, 1090
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 1 cut(s) 1203
XceI RCATGY 4 cut(s) 542, 836, 1213, 1311
XmaJI CCTAGG 1 cut(s) 886
XspI CTAG 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.