Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

13429544 .. 13434960

Gene Structure 5417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGCCGACTACGAAGGAAGGTACGACGGTAACGGAGAGGACGCTGACGGCTCCTCTCCCCAACCGCGGAGCACTAACCATGGCGGTCTCGACGATTACAGCGATTCCAAATCTCAGCATTCCCGTGATTATGAGAGAGAATCTTCAAAGAGTAGAGAAAAGGGGCGCGATAAGGAGAGGGACAGGGACAGAGATCGGGAGAGAGACAGGGATAGGGACAGGGACAGGGACAGAGGGAGAAGCAAGGATAAAGATAGAGAGAGGGACAGAGACAGGGGTAGGGATAGGGAACGAGAAAGGGACAGAGACAGGGATCATGATCGTCATCATAGAGACCGCCACAGGGATCGTGAAAGGAGTGAGCGAAGGAGAGATAAGGATGATGATGATGATGAGGATCACTACCGTAGCCGCGACCGTGATAGGCGGAGGGATTATGACAGAGACAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCAGGGGTAGGTCTGAGCATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGCAAAAGAATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCACTATTACCTGGTGCTGCTGTTCCTGTGACAGGCCAGATTCCTGGAGCTACTCCAACCATTCCTGGGATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGTTTGGAGCACTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTTACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGTACAGGGATGAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACAAGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

587

Amino Acids

65.98

Weight (kDa)

7.73

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	371 - 440	6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1593
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	3 cut(s)	565, 965, 1343
AccI	GTMKAC	1 cut(s)	1126
AccII	CGCG	4 cut(s)	67, 168, 414, 517
AccIII	TCCGGA	1 cut(s)	1720
AciI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1637
AclWI	GGATC	3 cut(s)	321, 354, 405
AcoI	YGGCCR	3 cut(s)	3, 679, 1443
AcsI	RAATTY	3 cut(s)	890, 1547, 1685
AcuI	CTGAAG	1 cut(s)	1511
AfaI	GTAC	3 cut(s)	23, 1149, 1666
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	1580
AjnI	CCWGG	8 cut(s)	479, 589, 622, 643, 847, 1075, 1606, 1737
AluBI	AGCT	2 cut(s)	629, 1489
AluI	AGCT	2 cut(s)	629, 1489
Alw21I	GWGCWC	2 cut(s)	74, 694
Alw26I	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 979, 1302
AlwI	GGATC	3 cut(s)	321, 354, 405
AlwNI	CAGNNNCTG	1 cut(s)	1082
Ama87I	CYCGRG	1 cut(s)	1166
Aor13HI	TCCGGA	1 cut(s)	1720
AoxI	GGCC	8 cut(s)	3, 613, 679, 844, 924, 1066, 1090, 1443
ApeKI	GCWGC	4 cut(s)	596, 1013, 1283, 1393
ApoI	RAATTY	3 cut(s)	890, 1547, 1685
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspLEI	GCGC	2 cut(s)	168, 468
AspS9I	GGNCC	4 cut(s)	845, 1025, 1100, 1178
AsuC2I	CCSGG	1 cut(s)	745
AsuHPI	GGTGA	2 cut(s)	1596, 1754
AvaI	CYCGRG	1 cut(s)	1166
AvaII	GGWCC	3 cut(s)	1025, 1100, 1178
BaeGI	GKGCMC	1 cut(s)	970
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	2 cut(s)	681, 1445
BanI	GGYRCC	3 cut(s)	565, 965, 1343
BbsI	GAAGAC	1 cut(s)	1518
Bbv12I	GWGCWC	2 cut(s)	74, 694
BbvI	GCAGC	4 cut(s)	583, 1000, 1295, 1405
BccI	CCATC	4 cut(s)	941, 1012, 1586, 1640
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	8 cut(s)	481, 591, 624, 645, 849, 1077, 1608, 1739
BcnI	CCSGG	1 cut(s)	745
BcoDI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 979, 1302
BfaI	CTAG	5 cut(s)	735, 990, 1199, 1755, 1762
BfmI	CTRYAG	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	2 cut(s)	911, 1255
BisI	GCNGC	5 cut(s)	412, 597, 1014, 1284, 1394
BlsI	GCNGC	5 cut(s)	413, 598, 1015, 1285, 1395
Bme1390I	CCNGG	9 cut(s)	481, 591, 624, 645, 745, 849, 1077, 1608, 1739
Bme18I	GGWCC	3 cut(s)	1025, 1100, 1178
BmeT110I	CYCGRG	1 cut(s)	1166
BmgBI	CACGTC	1 cut(s)	1580
BmgT120I	GGNCC	4 cut(s)	845, 1025, 1100, 1178
BmiI	GGNNCC	8 cut(s)	52, 567, 967, 1101, 1180, 1345, 1415, 1651
BmrFI	CCNGG	9 cut(s)	481, 591, 624, 645, 745, 849, 1077, 1608, 1739
BmrI	ACTGGG	1 cut(s)	1032
BmsI	GCATC	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	1518
BpmI	CTGGAG	2 cut(s)	645, 1629
Bpu10I	CCTNAGC	1 cut(s)	1362
BpuEI	CTTGAG	2 cut(s)	1115, 1523
BpuMI	CCSGG	1 cut(s)	745
BsaBI	GATNNNNATC	3 cut(s)	318, 324, 396
BsaI	GGTCTC	4 cut(s)	92, 327, 477, 979
BsaJI	CCNNGG	8 cut(s)	65, 79, 480, 644, 847, 1186, 1737, 1738
BsaWI	WCCGGW	1 cut(s)	1720
BsaXI	ACNNNNNCTCC	6 cut(s)	843, 873, 976, 1006, 1715, 1745
Bse1I	ACTGG	5 cut(s)	682, 682, 698, 1038, 1700
Bse3DI	GCAATG	4 cut(s)	723, 937, 942, 1403
Bse8I	GATNNNNATC	3 cut(s)	318, 324, 396
BseAI	TCCGGA	1 cut(s)	1720
BseBI	CCWGG	8 cut(s)	481, 591, 624, 645, 849, 1077, 1608, 1739
BseDI	CCNNGG	8 cut(s)	65, 79, 480, 644, 847, 1186, 1737, 1738
BseGI	GGATG	7 cut(s)	385, 654, 952, 1489, 1501, 1645, 1677
BseJI	GATNNNNATC	3 cut(s)	318, 324, 396
BseMI	GCAATG	4 cut(s)	723, 937, 942, 1403
BseMII	CTCAG	3 cut(s)	128, 483, 1353
BseNI	ACTGG	5 cut(s)	682, 682, 698, 1038, 1700
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	4 cut(s)	583, 1000, 1295, 1405
BsgI	GTGCAG	3 cut(s)	564, 731, 1302
Bsh1236I	CGCG	4 cut(s)	67, 168, 414, 517
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	8 cut(s)	5, 615, 681, 846, 926, 1068, 1092, 1445
BshNI	GGYRCC	3 cut(s)	565, 965, 1343
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	74, 694
BsiHKCI	CYCGRG	1 cut(s)	1166
BsiSI	CCGG	2 cut(s)	745, 1721
BslFI	GGGAC	8 cut(s)	194, 200, 230, 236, 242, 278, 314, 1113
BsmAI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 979, 1302
BsmFI	GGGAC	8 cut(s)	194, 200, 230, 236, 242, 278, 314, 1113
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	8 cut(s)	5, 615, 681, 846, 926, 1068, 1092, 1445
Bso31I	GGTCTC	4 cut(s)	92, 327, 477, 979
BsoBI	CYCGRG	1 cut(s)	1166
Bsp1286I	GDGCHC	3 cut(s)	74, 694, 970
Bsp13I	TCCGGA	1 cut(s)	1720
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1637
BspANI	GGCC	8 cut(s)	5, 615, 681, 846, 926, 1068, 1092, 1445
BspCNI	CTCAG	3 cut(s)	127, 484, 1354
BspEI	TCCGGA	1 cut(s)	1720
BspFNI	CGCG	4 cut(s)	67, 168, 414, 517
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	8 cut(s)	52, 567, 967, 1101, 1180, 1345, 1415, 1651
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	3 cut(s)	321, 354, 405
BspT107I	GGYRCC	3 cut(s)	565, 965, 1343
BspTNI	GGTCTC	4 cut(s)	92, 327, 477, 979
BsrDI	GCAATG	4 cut(s)	723, 937, 942, 1403
BsrI	ACTGG	5 cut(s)	682, 682, 698, 1038, 1700
BssECI	CCNNGG	8 cut(s)	65, 79, 480, 644, 847, 1186, 1737, 1738
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	8 cut(s)	481, 591, 624, 645, 849, 1077, 1608, 1739
Bst4CI	ACNGT	5 cut(s)	29, 407, 419, 789, 1324
Bst6I	CTCTTC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	9 cut(s)	714, 741, 822, 844, 928, 1034, 1332, 1386, 1434
BstDEI	CTNAG	3 cut(s)	114, 492, 1362
BstDSI	CCRYGG	3 cut(s)	65, 79, 1186
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	7 cut(s)	385, 654, 952, 1489, 1501, 1645, 1677
BstFNI	CGCG	4 cut(s)	67, 168, 414, 517
BstHHI	GCGC	2 cut(s)	168, 468
BstMAI	GTCTC	9 cut(s)	92, 198, 264, 300, 327, 438, 477, 979, 1302
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	5 cut(s)	572, 932, 1283, 1390, 1442
BstNI	CCWGG	8 cut(s)	481, 591, 624, 645, 849, 1077, 1608, 1739
BstNSI	RCATGY	4 cut(s)	664, 743, 824, 1388
BstSCI	CCNGG	9 cut(s)	479, 589, 622, 643, 743, 847, 1075, 1606, 1737
BstSFI	CTRYAG	1 cut(s)	774
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	4 cut(s)	67, 168, 414, 517
BstV1I	GCAGC	4 cut(s)	583, 1000, 1295, 1405
BstV2I	GAAGAC	1 cut(s)	1518
BstX2I	RGATCY	2 cut(s)	911, 1255
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	2 cut(s)	911, 1255
BsuRI	GGCC	8 cut(s)	5, 615, 681, 846, 926, 1068, 1092, 1445
BtgI	CCRYGG	3 cut(s)	65, 79, 1186
BtrI	CACGTC	1 cut(s)	1580
BtsCI	GGATG	7 cut(s)	385, 654, 952, 1489, 1501, 1645, 1677
BtsI	GCAGTG	2 cut(s)	837, 1716
BtsIMutI	CAGTG	3 cut(s)	837, 1286, 1716
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	9 cut(s)	714, 741, 822, 844, 928, 1034, 1332, 1386, 1434
CaiI	CAGNNNCTG	1 cut(s)	1082
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	168, 468
Cfr13I	GGNCC	4 cut(s)	845, 1025, 1100, 1178
Cfr42I	CCGCGG	1 cut(s)	68
CseI	GACGC	2 cut(s)	50, 1555
CsiI	ACCWGGT	2 cut(s)	589, 1075
Csp6I	GTAC	3 cut(s)	22, 1148, 1665
CspCI	CAANNNNNGTGG	2 cut(s)	1435, 1470
CviAII	CATG	9 cut(s)	80, 317, 562, 661, 740, 812, 821, 881, 1385
CviQI	GTAC	3 cut(s)	22, 1148, 1665
DdeI	CTNAG	3 cut(s)	114, 492, 1362
DrdI	GACNNNNNNGTC	1 cut(s)	1593
DseDI	GACNNNNNNGTC	1 cut(s)	1593
EaeI	YGGCCR	3 cut(s)	3, 679, 1443
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
EciI	GGCGGA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	79
Eco31I	GGTCTC	4 cut(s)	92, 327, 477, 979
Eco47I	GGWCC	3 cut(s)	1025, 1100, 1178
Eco57I	CTGAAG	1 cut(s)	1511
Eco88I	CYCGRG	1 cut(s)	1166
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	1100
EcoRII	CCWGG	8 cut(s)	479, 589, 622, 643, 847, 1075, 1606, 1737
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	9 cut(s)	83, 320, 565, 664, 743, 815, 824, 884, 1388
FaqI	GGGAC	8 cut(s)	194, 200, 230, 236, 242, 278, 314, 1113
FatI	CATG	9 cut(s)	79, 316, 561, 660, 739, 811, 820, 880, 1384
FblI	GTMKAC	1 cut(s)	1126
Fnu4HI	GCNGC	5 cut(s)	412, 597, 1014, 1284, 1394
FokI	GGATG	7 cut(s)	392, 661, 959, 1496, 1508, 1652, 1684
Fsp4HI	GCNGC	5 cut(s)	412, 597, 1014, 1284, 1394
FspBI	CTAG	5 cut(s)	735, 990, 1199, 1755, 1762
GlaI	GCGC	2 cut(s)	167, 467
GluI	GCNGC	5 cut(s)	412, 597, 1014, 1284, 1394
GsuI	CTGGAG	2 cut(s)	645, 1629
HaeIII	GGCC	8 cut(s)	5, 615, 681, 846, 926, 1068, 1092, 1445
HapII	CCGG	2 cut(s)	745, 1721
HgaI	GACGC	2 cut(s)	50, 1555
HhaI	GCGC	2 cut(s)	168, 468
Hin1II	CATG	9 cut(s)	83, 320, 565, 664, 743, 815, 824, 884, 1388
Hin6I	GCGC	2 cut(s)	166, 466
HinP1I	GCGC	2 cut(s)	166, 466
HincII	GTYRAC	1 cut(s)	1598
HindII	GTYRAC	1 cut(s)	1598
HinfI	GANTC	6 cut(s)	104, 140, 619, 721, 1169, 1696
HpaII	CCGG	2 cut(s)	745, 1721
HphI	GGTGA	2 cut(s)	1596, 1754
Hpy166II	GTNNAC	7 cut(s)	521, 871, 1127, 1249, 1556, 1583, 1598
Hpy188I	TCNGA	2 cut(s)	493, 1050
Hpy188III	TCNNGA	7 cut(s)	89, 197, 317, 350, 504, 1502, 1721
Hpy8I	GTNNAC	7 cut(s)	521, 871, 1127, 1249, 1556, 1583, 1598
Hpy99I	CGWCG	2 cut(s)	29, 95
HpyAV	CCTTC	4 cut(s)	8, 12, 360, 1486
HpyCH4III	ACNGT	5 cut(s)	29, 407, 419, 789, 1324
HpyCH4IV	ACGT	2 cut(s)	529, 1579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	572, 932, 1283, 1390, 1442
HpyF3I	CTNAG	3 cut(s)	114, 492, 1362
HpySE526I	ACGT	2 cut(s)	529, 1579
Hsp92II	CATG	9 cut(s)	83, 320, 565, 664, 743, 815, 824, 884, 1388
HspAI	GCGC	2 cut(s)	166, 466
Kpn2I	TCCGGA	1 cut(s)	1720
KspI	CCGCGG	1 cut(s)	68
LmnI	GCTCC	4 cut(s)	56, 69, 626, 689
Lsp1109I	GCAGC	4 cut(s)	583, 1000, 1295, 1405
LweI	GCATC	1 cut(s)	844
MabI	ACCWGGT	2 cut(s)	589, 1075
MaeI	CTAG	5 cut(s)	735, 990, 1199, 1755, 1762
MaeII	ACGT	2 cut(s)	529, 1579
MaeIII	GTNAC	6 cut(s)	29, 607, 992, 1264, 1474, 1742
MboII	GAAGA	4 cut(s)	135, 932, 1523, 1535
MflI	RGATCY	2 cut(s)	911, 1255
MhlI	GDGCHC	3 cut(s)	74, 694, 970
MlsI	TGGCCA	2 cut(s)	681, 1445
MluCI	AATT	5 cut(s)	546, 890, 1398, 1547, 1685
MluNI	TGGCCA	2 cut(s)	681, 1445
MlyI	GAGTC	2 cut(s)	715, 1178
MmeI	TCCRAC	3 cut(s)	659, 739, 1594
Mox20I	TGGCCA	2 cut(s)	681, 1445
Mph1103I	ATGCAT	1 cut(s)	822
MroI	TCCGGA	1 cut(s)	1720
MscI	TGGCCA	2 cut(s)	681, 1445
MseI	TTAA	4 cut(s)	864, 975, 1299, 1463
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	2 cut(s)	681, 1445
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	745, 1721
MspR9I	CCNGG	9 cut(s)	481, 591, 624, 645, 745, 849, 1077, 1608, 1739
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	8 cut(s)	481, 591, 624, 645, 849, 1077, 1608, 1739
MvnI	CGCG	4 cut(s)	67, 168, 414, 517
MwoI	GCNNNNNNNGC	5 cut(s)	572, 932, 1283, 1390, 1442
NciI	CCSGG	1 cut(s)	745
NcoI	CCATGG	1 cut(s)	79
NlaIII	CATG	9 cut(s)	83, 320, 565, 664, 743, 815, 824, 884, 1388
NlaIV	GGNNCC	8 cut(s)	52, 567, 967, 1101, 1180, 1345, 1415, 1651
NmuCI	GTSAC	3 cut(s)	607, 992, 1742
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	4 cut(s)	664, 743, 824, 1388
PaeI	GCATGC	3 cut(s)	743, 824, 1388
PaeR7I	CTCGAG	1 cut(s)	1166
PagI	TCATGA	1 cut(s)	316
PasI	CCCWGGG	1 cut(s)	1738
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	104, 140, 619, 1696
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	5 cut(s)	413, 598, 1015, 1285, 1395
PleI	GAGTC	2 cut(s)	715, 1177
PpsI	GAGTC	2 cut(s)	715, 1177
PpuMI	RGGWCCY	1 cut(s)	1100
PscI	ACATGT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	1100
Psp6I	CCWGG	8 cut(s)	479, 589, 622, 643, 847, 1075, 1606, 1737
PspGI	CCWGG	8 cut(s)	479, 589, 622, 643, 847, 1075, 1606, 1737
PspN4I	GGNNCC	8 cut(s)	52, 567, 967, 1101, 1180, 1345, 1415, 1651
PspPI	GGNCC	4 cut(s)	845, 1025, 1100, 1178
PspPPI	RGGWCCY	1 cut(s)	1100
PspXI	VCTCGAGB	1 cut(s)	1166
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	2 cut(s)	911, 1255
RsaI	GTAC	3 cut(s)	23, 1149, 1666
RsaNI	GTAC	3 cut(s)	22, 1148, 1665
RseI	CAYNNNNRTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	864, 975, 1299, 1463
SatI	GCNGC	5 cut(s)	412, 597, 1014, 1284, 1394
Sau96I	GGNCC	4 cut(s)	845, 1025, 1100, 1178
SchI	GAGTC	2 cut(s)	715, 1178
ScrFI	CCNGG	9 cut(s)	481, 591, 624, 645, 745, 849, 1077, 1608, 1739
SduI	GDGCHC	3 cut(s)	74, 694, 970
SexAI	ACCWGGT	2 cut(s)	589, 1075
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	1166
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	3 cut(s)	1025, 1100, 1178
SlaI	CTCGAG	1 cut(s)	1166
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	3 cut(s)	1094, 1166, 1502
SmoI	CTYRAG	3 cut(s)	1094, 1166, 1502
SphI	GCATGC	3 cut(s)	743, 824, 1388
Sse9I	AATT	5 cut(s)	546, 890, 1398, 1547, 1685
SsiI	CCGC	8 cut(s)	65, 67, 84, 337, 412, 427, 552, 1637
SspMI	CTAG	5 cut(s)	735, 990, 1199, 1755, 1762
StyD4I	CCNGG	9 cut(s)	479, 589, 622, 643, 743, 847, 1075, 1606, 1737
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	29, 407, 419, 789, 1324
TaiI	ACGT	2 cut(s)	532, 1582
TaqI	TCGA	4 cut(s)	90, 960, 1167, 1226
TasI	AATT	5 cut(s)	546, 890, 1398, 1547, 1685
TatI	WGTACW	1 cut(s)	1147
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	4 cut(s)	104, 140, 619, 1696
Tru1I	TTAA	4 cut(s)	864, 975, 1299, 1463
Tru9I	TTAA	4 cut(s)	864, 975, 1299, 1463
TscAI	CASTG	3 cut(s)	844, 1293, 1716
TseFI	GTSAC	3 cut(s)	607, 992, 1742
TseI	GCWGC	4 cut(s)	596, 1013, 1283, 1393
Tsp45I	GTSAC	3 cut(s)	607, 992, 1742
TspDTI	ATGAA	5 cut(s)	798, 897, 1524, 1544, 1688
TspGWI	ACGGA	2 cut(s)	48, 1175
TspRI	CASTG	3 cut(s)	844, 1293, 1716
VpaK11BI	GGWCC	3 cut(s)	1025, 1100, 1178
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	3 cut(s)	890, 1547, 1685
XceI	RCATGY	4 cut(s)	664, 743, 824, 1388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	1166
XmiI	GTMKAC	1 cut(s)	1126
XspI	CTAG	5 cut(s)	735, 990, 1199, 1755, 1762
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.