Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

8859136 .. 8867416

Gene Structure 8281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3810 bp

ATGACAATGGATCTACACCCATCAATGGCGCAAAGTGTGAGAACGAGTAGGTCCTCTTTTAGCTCCAGCAATGGCAATGAGGATACTCCCGTGCACAGCTCTACGGCCTTTTTGAATGGGGATGATTATGACAGCGATAGCTCCAGCGTGGCACCACCTACTCCAAGGACGCTATCGATGGATATCCCAGCAGAACTTGCTGGTGCCATACCCTTGATTGATAGATTTCAGGTAGAGGGATTTTTGAGGTTAATGCAGAAGCAGATTCAGTCTGCTGGAAAACGGGGGTTCTTTTCTAAAAAATCTGTTGGTCCTCAACCTCGAGAAAAGTTCACTTTTGAGGACATGCTGTGCTTCCAAAAGGATCCTATACCTACATCCTTACTTAAAATCAATAGTGACCTGGTTAGCCGGGCAATGAAACTGTTCCAGACCATTCTGAAGTACATGGGAATAGACTCATCTGACCGATTTACTCCACCAAGCTTAGATGAAAGGATTGAACTTGTTGGAAAGTTGTATAAGCAAACATTGAAGCGAACAGAGCTCCGTGATGAACTTTTTGCACAGATTTCCAAACAAACAAGAAATAATCCTGATAAGCAATGCTTAATTAAAGCATGGGAATTGATGTATTTGTGTGCATCCTCCATGCCCCCTAATAAGGACATCGGCGGCTATCTGTCTGAGTATGTCCATAATGTTGCACATGGTGCGAATATTGACTGTGATGTTCGAGTCCTAGCATTAAATACTTTAAATGCTTTGAAGCGTTCTGTCAAGGCTGGACCAAGGCATACAATACCAGGCCGGGAGGAGATAGAAGCACTTTTAACTGGTCGAAAGCTTACAACAATAGTGTTTTTTTTGGATGAAACTTTCGAAGAAATCACATATGACATGGCAACAACAGTGGCTGATGCTGTTGAGGAACTTGCAGGGATAATTAAATTGTCAGCATTTTCTAGCTTTAGTCTGTTTGAATGCCACAAAGTTGTAACGGGCTCGAAATCACCTGACCTCGGAAATGAGGAGTATATTGGCCTAGATGACAACAAATACATAGGGGATCTGTTGGCAGAATTTAAAGCAGCAAAAGATCGAAGTAAAGGAGAAATTTTGCATTGCAAGCTGACATTTAAAAAGAAGCTATTTCGGGAGTCAGATGAAGCTGTAGCAGATCCAATGTTTGTGCAGTTGTCCTATGTTCAATTGCAACATGATTACATCATGGGAAATTATCCTGTGGGAAGAGACGATGCTGCACAGCTTTCTGCATTGCAAATATTGGTTGATATTGGATTCGTTGGTACCCCTGAATCATGCAATGACTGGAATTCGCTTTTGGAACGCTTTCTACCTAGACAAATTGCAATCACACGCGCAAAACGGGAGTGGGAGTTGGATATTCTTTCCCGTTACCATTCAATGCAAAACTTGACAAAAGATGATGCAAGACAACAATTCTTGCGAATACTGAGAACACTTCCTTATGGGAATTCAGTGTTCTTCAGTGTTCGCAAGATAGATGATCCTATTGGACTTCTGCCCGGGCGGATCATTTTGGGAATCAACAAAAGAGGGGTTCATTTTTTTCGTCCTGTTCCAAAGGAATATCTACATTCAGCAGAACTAAGAGACATAATGCAATTTGGTAGTAGCAATACTGCTGTTTTCTTCAAGATGAGAGTTGCAGGTGTTCTTCACATATTCCAATTTGAAACTAAGCAGGGTGAAGAAATTTGCGTTGCTCTTCAAACACATATAAATGATGTCATGCTGCGGCGCTACTCTAAAGCCCGGACTGCTTCTAGTGGTTCGACGAATGGAGATATTTCTAACAATTTGAAGCCCTCTGATGAAGTGCATGAAAAACGTGTACAAGATTTGTCAAAAGCTGTTGAAGAATCTCAGCGGAATGTTGATCAATTGCTGGAAGAATTGCGTGAAAAACAAAAACAAGAAGCAAAACTGCAAGATGATTTGGATAATTTAAAGCAATCATTGGCATCTGAGAAGCAAAACTTGTCAGAAGTTGCAGGCGACCACAATAGACTAAAGTCATTGTGTGATGACAAGGACAAGGCACTTCAGGCTGCACTGGCAGAGAAGAAGAGCTTGGAAGCACAGTTGGCAAAGCTGAGTAATCAAGCAGTGCAGAAAAATGACAAGACAAATCTGGTTGGTGGAGGAAACAACCAGGTTTTGGATAAACTCAAAGATGAGATAAAGCTTTGTACTGAGGAGTTAAAAGAAAAAGAAGAAACTATAAGGAGACTAGCAGATGATAAATTACTACTGGAGCAAACCATATCTGGCCTTGAAAAGAGTAAATCTGATGAGATTGATTCTCTTGAGAAAACTTTTGAGCAAGAGCGCAAAGCATTAAAGCTTCGAGTTTTTGAAATTGAAAAGAAGCTTGAAGGAGTTAATCAAGAATTAGCTGTTCTAAAGTCAACTCTTGCAAGCAGGAACTCTGAGATTGCTGCATTACAGAATAACCTAAAGGAATTGGACGAATTGAGAGAAATGAAAGAGGATATTGATAGAAAGAATGAGCAAACTGCCTCCCTCTTGAGGATGCAGGGGGCTCAACTAGCTGAGATGGAATCCCTTTACAAGGAGGAACAACTTCTAAGGAAGCGCTATTTCAACACCATAGAAGATATGAAAGGCAAGATCAGAGTTTATTGTAGATTAAGACCTATGAGTGAAAAAGAGATTGCTGAAAAACAAGGATGTGCAGTTTCAAGTATTGATGAGTTTACGGTTGAACATCCATGGAAAGATGAAAAACAGAAACAGCATACATATGATCGTGTATTTGATGAGCATGCTACCCAAGAAGATGTGTTTGAAGATACAAGGTATTTGGTACAATCTGCCGTAGATGGATACAACGTGTGCATATTTGCTTATGGGCAAACAGGTTCTGGGAAGACATATACCATTTATGGTGCAGAAACTAAACCTGGACTTACTCCTAGAGCTACTGCAGAACTTTTTAAAATCTTGAAGCGAGATAGCAACAAGTTCTCATTTTCTTTGAAGGCATATATGGTGGAATTGTATCAAGATACACTGTTAGACCTTCTATTGCCCAAAAATGCAAAGCGTCCAAAATTAGATATCAAAAAGGATTCAAAGGGCATGGTATCAGTTGAAAATATAACGCTTCTATCAATTTCAACACATGAGGAACTGAAAAACGTCATTCAAAGAGGATCTGAACGACGGCATACGTCAGGCACTCAAATGAATCAAGAAAGTTCAAGATCTCACCTCATAGTGTCGGTTATTATTGAAAGTACCAATCTTCAGACGCAGTCTGTTGCAAGAGGAAAGCTAAGTTTTGTGGATCTTGCTGGTTCGGAAAGAATAAAGAAGTCAGGTTCTGCGGGCAGTCAACTCAAAGAAGCTCAAAGCATCAACAAGTCACTTTCAGCACTCGGAGATGTGATTGGTGCTTTATCTTCTGGTGGACAGCACATACCCTACCGGAATCACAAACTAACAATGTTGATGAGTGATTCCCTTGGTGGTAATGCCAAGACGCTGATGTTTGTCAATTGTTCTCCTGCTGAATCAAACATGGATGAGACGTACAATTCTCTAATGTATGCATCAAGAGTTCGAGCAATCGTGAATGATCCAAGCAAGAATGTATCTTCAAAAGAGATCATGCGACTGAAAAAGTTGGTTTCTTATTGGAAAGAACAAGCTGGAAAGAGAGGAGAAGATGAGGATTTAGAAGAAATCCAGGACGAGCGACCACCAAGAGAGAAAGGAGATGGCCGGCACTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1269

Amino Acids

143.38

Weight (kDa)

6.46

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MyTH4	PF00784	172 - 276	1.1e-25	MyTH4 domain
RA_2	PF21989	282 - 383	2.1e-06	RA like domain
FERM_M	PF00373	388 - 504	4.6e-22	FERM central domain
IRS	PF02174	514 - 590	8.3e-07	PTB domain (IRS-1 type)
Microtub_bd	PF16796	874 - 1032	2.7e-48	Microtubule binding
Kinesin	PF00225	899 - 1214	2.1e-109	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1685
Acc36I	ACCTGC	1 cut(s)	1685
Acc65I	GGTACC	1 cut(s)	1310
AccB1I	GGYRCC	3 cut(s)	151, 203, 1310
AccB7I	CCANNNNNTGG	1 cut(s)	2206
AccII	CGCG	1 cut(s)	1383
AciI	CCGC	5 cut(s)	675, 1555, 1783, 1915, 3398
AcoI	YGGCCR	1 cut(s)	3793
AcsI	RAATTY	5 cut(s)	1082, 1116, 1336, 1498, 1740
AcuI	CTGAAG	4 cut(s)	461, 1495, 2075, 3302
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	7 cut(s)	446, 1312, 1881, 2239, 2877, 3310, 3605
AfeI	AGCGCT	1 cut(s)	2645
AfiI	CCNNNNNNNGG	6 cut(s)	25, 664, 1022, 2206, 2577, 2620
AflIII	ACRYGT	2 cut(s)	1876, 2901
AjnI	CCWGG	5 cut(s)	402, 805, 2199, 2971, 3759
AjuI	GAANNNNNNNTTGG	4 cut(s)	1328, 1360, 2102, 2134
Alw21I	GWGCWC	2 cut(s)	96, 549
Alw26I	GTCTC	4 cut(s)	1248, 1632, 2269, 3593
Alw44I	GTGCAC	1 cut(s)	92
AlwNI	CAGNNNCTG	3 cut(s)	917, 2933, 3395
Ama87I	CYCGRG	2 cut(s)	321, 1550
Aor51HI	AGCGCT	1 cut(s)	2645
AoxI	GGCC	5 cut(s)	105, 808, 1042, 2317, 3793
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	5 cut(s)	1091, 1262, 1780, 2096, 2486
ApoI	RAATTY	5 cut(s)	1082, 1116, 1336, 1498, 1740
Asp700I	GAANNNNTTC	3 cut(s)	425, 1353, 2631
Asp718I	GGTACC	1 cut(s)	1310
AspLEI	GCGC	5 cut(s)	31, 1385, 1788, 2379, 2646
AspS9I	GGNCC	3 cut(s)	51, 311, 788
AsuC2I	CCSGG	5 cut(s)	413, 812, 1551, 1552, 1801
AsuHPI	GGTGA	3 cut(s)	1005, 1745, 3272
AsuII	TTCGAA	1 cut(s)	882
AvaI	CYCGRG	2 cut(s)	321, 1550
AvaII	GGWCC	3 cut(s)	51, 311, 788
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	3 cut(s)	151, 203, 1310
BanII	GRGCYC	3 cut(s)	549, 1007, 2593
BbsI	GAAGAC	1 cut(s)	2945
Bbv12I	GWGCWC	2 cut(s)	96, 549
BbvI	GCAGC	5 cut(s)	1103, 1249, 1767, 2083, 2473
BccI	CCATC	5 cut(s)	28, 172, 2599, 2885, 3785
BceAI	ACGGC	3 cut(s)	120, 2870, 3251
BciT130I	CCWGG	5 cut(s)	404, 807, 2201, 2973, 3761
BciVI	GTATCC	2 cut(s)	76, 2888
BclI	TGATCA	1 cut(s)	1924
BcnI	CCSGG	5 cut(s)	413, 812, 1551, 1552, 1801
BcoDI	GTCTC	4 cut(s)	1248, 1632, 2269, 3593
BfaI	CTAG	8 cut(s)	743, 966, 1046, 1362, 1812, 2279, 2597, 2985
BfmI	CTRYAG	2 cut(s)	1173, 2994
BfoI	RGCGCY	2 cut(s)	1789, 2647
BfuAI	ACCTGC	1 cut(s)	1685
BfuI	GTATCC	2 cut(s)	76, 2888
BglII	AGATCT	1 cut(s)	3275
BisI	GCNGC	7 cut(s)	676, 1092, 1263, 1781, 1784, 2097, 2487
BlsI	GCNGC	7 cut(s)	677, 1093, 1264, 1782, 1785, 2098, 2488
Bme18I	GGWCC	3 cut(s)	51, 311, 788
BmeT110I	CYCGRG	2 cut(s)	321, 1550
BmgT120I	GGNCC	3 cut(s)	51, 311, 788
BmiI	GGNNCC	4 cut(s)	153, 205, 366, 1312
BmsI	GCATC	8 cut(s)	653, 910, 1249, 1441, 2018, 2571, 3435, 3632
BoxI	GACNNNNGTC	1 cut(s)	2059
BpiI	GAAGAC	1 cut(s)	2945
BpmI	CTGGAG	3 cut(s)	49, 127, 2321
Bpu14I	TTCGAA	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	2375, 2596
BpuMI	CCSGG	5 cut(s)	413, 812, 1551, 1552, 1801
Bsa29I	ATCGAT	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	6 cut(s)	164, 791, 1021, 1550, 2780, 3535
BsaWI	WCCGGW	1 cut(s)	3498
BsaXI	ACNNNNNCTCC	2 cut(s)	1385, 1415
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 664, 1022, 2206, 2577, 2620
Bse118I	RCCGGY	1 cut(s)	3795
Bse1I	ACTGG	4 cut(s)	841, 1337, 2106, 2304
Bse3DI	GCAATG	7 cut(s)	76, 82, 423, 611, 1123, 1277, 1333
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	5 cut(s)	404, 807, 2201, 2973, 3761
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	6 cut(s)	164, 791, 1021, 1550, 2780, 3535
BseGI	GGATG	8 cut(s)	127, 377, 644, 877, 2586, 2744, 2776, 3601
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	6 cut(s)	25, 664, 1022, 2206, 2577, 2620
BseMI	GCAATG	7 cut(s)	76, 82, 423, 611, 1123, 1277, 1333
BseMII	CTCAG	8 cut(s)	678, 1469, 1925, 2004, 2132, 2232, 2469, 2592
BseNI	ACTGG	4 cut(s)	841, 1337, 2106, 2304
BseRI	GAGGAG	4 cut(s)	830, 1046, 2258, 3747
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	1103, 1249, 1767, 2083, 2473
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	6 cut(s)	1214, 1248, 2082, 2177, 2763, 2979
Bsh1236I	CGCG	1 cut(s)	1383
BshFI	GGCC	5 cut(s)	107, 810, 1044, 2319, 3795
BshNI	GGYRCC	3 cut(s)	151, 203, 1310
BshVI	ATCGAT	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	96, 549
BsiHKCI	CYCGRG	2 cut(s)	321, 1550
BsiSI	CCGG	6 cut(s)	412, 811, 1551, 1801, 3499, 3796
BslI	CCNNNNNNNGG	6 cut(s)	25, 664, 1022, 2206, 2577, 2620
BsmAI	GTCTC	4 cut(s)	1248, 1632, 2269, 3593
BsmBI	CGTCTC	2 cut(s)	1248, 3593
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	5 cut(s)	107, 810, 1044, 2319, 3795
BsoBI	CYCGRG	2 cut(s)	321, 1550
Bsp119I	TTCGAA	1 cut(s)	882
Bsp1286I	GDGCHC	4 cut(s)	96, 549, 1007, 2593
Bsp1407I	TGTACA	1 cut(s)	1879
Bsp19I	CCATGG	1 cut(s)	2780
BspACI	CCGC	5 cut(s)	675, 1555, 1783, 1915, 3398
BspANI	GGCC	5 cut(s)	107, 810, 1044, 2319, 3795
BspCNI	CTCAG	8 cut(s)	679, 1470, 1924, 2005, 2133, 2233, 2470, 2593
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	1383
BspLI	GGNNCC	4 cut(s)	153, 205, 366, 1312
BspMAI	CTGCAG	1 cut(s)	2998
BspMI	ACCTGC	1 cut(s)	1685
BspQI	GCTCTTC	2 cut(s)	1758, 2108
BspT104I	TTCGAA	1 cut(s)	882
BspT107I	GGYRCC	3 cut(s)	151, 203, 1310
BsrDI	GCAATG	7 cut(s)	76, 82, 423, 611, 1123, 1277, 1333
BsrFI	RCCGGY	1 cut(s)	3795
BsrGI	TGTACA	1 cut(s)	1879
BsrI	ACTGG	4 cut(s)	841, 1337, 2106, 2304
BssAI	RCCGGY	1 cut(s)	3795
BssECI	CCNNGG	6 cut(s)	164, 791, 1021, 1550, 2780, 3535
BssT1I	CCWWGG	4 cut(s)	164, 791, 2780, 3535
Bst2UI	CCWGG	5 cut(s)	404, 807, 2201, 2973, 3761
Bst4CI	ACNGT	6 cut(s)	426, 728, 913, 2130, 2770, 3084
Bst6I	CTCTTC	3 cut(s)	1246, 1758, 2108
BstAPI	GCANNNNNTGC	2 cut(s)	197, 713
BstAUI	TGTACA	1 cut(s)	1879
BstBI	TTCGAA	1 cut(s)	882
BstC8I	GCNNGC	6 cut(s)	1130, 2041, 2467, 2835, 3400, 3797
BstDSI	CCRYGG	1 cut(s)	2780
BstENI	CCTNNNNNAGG	1 cut(s)	2618
BstF5I	GGATG	8 cut(s)	127, 377, 644, 877, 2586, 2744, 2776, 3601
BstFNI	CGCG	1 cut(s)	1383
BstH2I	RGCGCY	2 cut(s)	1789, 2647
BstHHI	GCGC	5 cut(s)	31, 1385, 1788, 2379, 2646
BstMAI	GTCTC	4 cut(s)	1248, 1632, 2269, 3593
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 544, 713, 1129, 1805, 2093, 2102, 2132, 2597
BstNI	CCWGG	5 cut(s)	404, 807, 2201, 2973, 3761
BstNSI	RCATGY	2 cut(s)	349, 2837
BstPAI	GACNNNNGTC	1 cut(s)	2059
BstSFI	CTRYAG	2 cut(s)	1173, 2994
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	1383
BstV1I	GCAGC	5 cut(s)	1103, 1249, 1767, 2083, 2473
BstV2I	GAAGAC	1 cut(s)	2945
BstX2I	RGATCY	7 cut(s)	10, 364, 1069, 1180, 3224, 3275, 3358
BstYI	RGATCY	7 cut(s)	10, 364, 1069, 1180, 3224, 3275, 3358
Bsu15I	ATCGAT	1 cut(s)	176
BsuI	GTATCC	2 cut(s)	76, 2888
BsuRI	GGCC	5 cut(s)	107, 810, 1044, 2319, 3795
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	2780
BtsCI	GGATG	8 cut(s)	127, 377, 644, 877, 2586, 2744, 2776, 3601
BtsI	GCAGTG	1 cut(s)	2160
BtsIMutI	CAGTG	6 cut(s)	918, 1509, 1519, 2099, 2160, 3080
BveI	ACCTGC	1 cut(s)	1685
Cac8I	GCNNGC	6 cut(s)	1130, 2041, 2467, 2835, 3400, 3797
CaiI	CAGNNNCTG	3 cut(s)	917, 2933, 3395
CfoI	GCGC	5 cut(s)	31, 1385, 1788, 2379, 2646
Cfr10I	RCCGGY	1 cut(s)	3795
Cfr13I	GGNCC	3 cut(s)	51, 311, 788
Cfr9I	CCCGGG	1 cut(s)	1550
ClaI	ATCGAT	1 cut(s)	176
CseI	GACGC	4 cut(s)	178, 3104, 3331, 3562
CsiI	ACCWGGT	2 cut(s)	402, 2199
Csp6I	GTAC	7 cut(s)	445, 1311, 1880, 2238, 2876, 3309, 3604
CspCI	CAANNNNNGTGG	2 cut(s)	894, 929
CviQI	GTAC	7 cut(s)	445, 1311, 1880, 2238, 2876, 3309, 3604
DraI	TTTAAA	5 cut(s)	759, 1087, 1141, 1995, 3007
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	3793
Eam1104I	CTCTTC	3 cut(s)	1246, 1758, 2108
EarI	CTCTTC	3 cut(s)	1246, 1758, 2108
EciI	GGCGGA	1 cut(s)	1570
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	4 cut(s)	164, 791, 2780, 3535
Eco24I	GRGCYC	3 cut(s)	549, 1007, 2593
Eco32I	GATATC	2 cut(s)	184, 3130
Eco47I	GGWCC	3 cut(s)	51, 311, 788
Eco47III	AGCGCT	1 cut(s)	2645
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	4 cut(s)	461, 1495, 2075, 3302
Eco88I	CYCGRG	2 cut(s)	321, 1550
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	2618
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	2 cut(s)	1336, 1498
EcoRII	CCWGG	5 cut(s)	402, 805, 2199, 2971, 3759
EcoRV	GATATC	2 cut(s)	184, 3130
EcoT14I	CCWWGG	4 cut(s)	164, 791, 2780, 3535
EcoT22I	ATGCAT	1 cut(s)	3625
EcoT38I	GRGCYC	3 cut(s)	549, 1007, 2593
ErhI	CCWWGG	4 cut(s)	164, 791, 2780, 3535
Esp3I	CGTCTC	2 cut(s)	1248, 3593
FalI	AAGNNNNNCTT	6 cut(s)	593, 625, 2009, 2041, 2102, 2134
FauI	CCCGC	1 cut(s)	3391
FauNDI	CATATG	2 cut(s)	895, 2812
FbaI	TGATCA	1 cut(s)	1924
Fnu4HI	GCNGC	7 cut(s)	676, 1092, 1263, 1781, 1784, 2097, 2487
FokI	GGATG	8 cut(s)	134, 364, 631, 884, 2593, 2751, 2763, 3608
FriOI	GRGCYC	3 cut(s)	549, 1007, 2593
Fsp4HI	GCNGC	7 cut(s)	676, 1092, 1263, 1781, 1784, 2097, 2487
FspBI	CTAG	8 cut(s)	743, 966, 1046, 1362, 1812, 2279, 2597, 2985
GlaI	GCGC	5 cut(s)	30, 1384, 1787, 2378, 2645
GluI	GCNGC	7 cut(s)	676, 1092, 1263, 1781, 1784, 2097, 2487
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	3 cut(s)	49, 127, 2321
HaeII	RGCGCY	2 cut(s)	1789, 2647
HaeIII	GGCC	5 cut(s)	107, 810, 1044, 2319, 3795
HapII	CCGG	6 cut(s)	412, 811, 1551, 1801, 3499, 3796
HgaI	GACGC	4 cut(s)	178, 3104, 3331, 3562
HhaI	GCGC	5 cut(s)	31, 1385, 1788, 2379, 2646
Hin6I	GCGC	5 cut(s)	29, 1383, 1786, 2377, 2644
HinP1I	GCGC	5 cut(s)	29, 1383, 1786, 2377, 2644
HincII	GTYRAC	2 cut(s)	2457, 3407
HindII	GTYRAC	2 cut(s)	2457, 3407
HindIII	AAGCTT	5 cut(s)	484, 845, 2231, 2390, 2417
HpaII	CCGG	6 cut(s)	412, 811, 1551, 1801, 3499, 3796
HphI	GGTGA	3 cut(s)	1005, 1745, 3272
Hpy166II	GTNNAC	7 cut(s)	94, 333, 1880, 2457, 2766, 3407, 3482
Hpy8I	GTNNAC	7 cut(s)	94, 333, 1880, 2457, 2766, 3407, 3482
Hpy99I	CGWCG	2 cut(s)	1825, 3237
HpyAV	CCTTC	3 cut(s)	2417, 3043, 3101
HpyCH4III	ACNGT	6 cut(s)	426, 728, 913, 2130, 2770, 3084
HpyCH4IV	ACGT	5 cut(s)	1876, 2901, 3210, 3242, 3602
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 544, 713, 1129, 1805, 2093, 2102, 2132, 2597
HpySE526I	ACGT	5 cut(s)	1876, 2901, 3210, 3242, 3602
HspAI	GCGC	5 cut(s)	29, 1383, 1786, 2377, 2644
KpnI	GGTACC	1 cut(s)	1314
KroI	GCCGGC	1 cut(s)	3795
KroNI	GCCGGC	1 cut(s)	3797
Ksp22I	TGATCA	1 cut(s)	1924
LguI	GCTCTTC	2 cut(s)	1758, 2108
LmnI	GCTCC	4 cut(s)	68, 146, 552, 2302
Lsp1109I	GCAGC	5 cut(s)	1103, 1249, 1767, 2083, 2473
LweI	GCATC	8 cut(s)	653, 910, 1249, 1441, 2018, 2571, 3435, 3632
MabI	ACCWGGT	2 cut(s)	402, 2199
MaeI	CTAG	8 cut(s)	743, 966, 1046, 1362, 1812, 2279, 2597, 2985
MaeII	ACGT	5 cut(s)	1876, 2901, 3210, 3242, 3602
MaeIII	GTNAC	4 cut(s)	398, 997, 1418, 3435
MfeI	CAATTG	3 cut(s)	1211, 1928, 3568
MflI	RGATCY	7 cut(s)	10, 364, 1069, 1180, 3224, 3275, 3358
MhlI	GDGCHC	4 cut(s)	96, 549, 1007, 2593
MlyI	GAGTC	3 cut(s)	452, 747, 1169
MmeI	TCCRAC	2 cut(s)	490, 1383
Mph1103I	ATGCAT	1 cut(s)	3625
MroNI	GCCGGC	1 cut(s)	3795
MroXI	GAANNNNTTC	3 cut(s)	425, 1353, 2631
MslI	CAYNNNNRTG	3 cut(s)	1767, 2811, 3254
MspA1I	CMGCKG	1 cut(s)	1915
MspI	CCGG	6 cut(s)	412, 811, 1551, 1801, 3499, 3796
MunI	CAATTG	3 cut(s)	1211, 1928, 3568
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	5 cut(s)	404, 807, 2201, 2973, 3761
MvnI	CGCG	1 cut(s)	1383
MwoI	GCNNNNNNNGC	9 cut(s)	197, 544, 713, 1129, 1805, 2093, 2102, 2132, 2597
NaeI	GCCGGC	1 cut(s)	3797
NciI	CCSGG	5 cut(s)	413, 812, 1551, 1552, 1801
NcoI	CCATGG	1 cut(s)	2780
NdeI	CATATG	2 cut(s)	895, 2812
NgoMIV	GCCGGC	1 cut(s)	3795
NlaIV	GGNNCC	4 cut(s)	153, 205, 366, 1312
NmuCI	GTSAC	2 cut(s)	398, 3435
NsiI	ATGCAT	1 cut(s)	3625
NspI	RCATGY	2 cut(s)	349, 2837
NspV	TTCGAA	1 cut(s)	882
PacI	TTAATTAA	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	2837
PaeR7I	CTCGAG	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	1685
PciSI	GCTCTTC	2 cut(s)	1758, 2108
PctI	GAATGC	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	3797
PdmI	GAANNNNTTC	3 cut(s)	425, 1353, 2631
PflFI	GACNNNGTC	1 cut(s)	3325
PflMI	CCANNNNNTGG	1 cut(s)	2206
PfoI	TCCNGGA	1 cut(s)	3759
PkrI	GCNGC	7 cut(s)	677, 1093, 1264, 1782, 1785, 2098, 2488
PleI	GAGTC	3 cut(s)	452, 746, 1168
PpsI	GAGTC	3 cut(s)	452, 746, 1168
PpuMI	RGGWCCY	1 cut(s)	51
PshAI	GACNNNNGTC	1 cut(s)	2059
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	5 cut(s)	402, 805, 2199, 2971, 3759
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	5 cut(s)	402, 805, 2199, 2971, 3759
PspN4I	GGNNCC	4 cut(s)	153, 205, 366, 1312
PspPI	GGNCC	3 cut(s)	51, 311, 788
PspPPI	RGGWCCY	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	1341, 1373
PstI	CTGCAG	1 cut(s)	2998
PstNI	CAGNNNCTG	3 cut(s)	917, 2933, 3395
PsuI	RGATCY	7 cut(s)	10, 364, 1069, 1180, 3224, 3275, 3358
PsyI	GACNNNGTC	1 cut(s)	3325
RsaI	GTAC	7 cut(s)	446, 1312, 1881, 2239, 2877, 3310, 3605
RsaNI	GTAC	7 cut(s)	445, 1311, 1880, 2238, 2876, 3309, 3604
RseI	CAYNNNNRTG	3 cut(s)	1767, 2811, 3254
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	2 cut(s)	1758, 2108
SatI	GCNGC	7 cut(s)	676, 1092, 1263, 1781, 1784, 2097, 2487
Sau96I	GGNCC	3 cut(s)	51, 311, 788
SchI	GAGTC	3 cut(s)	452, 747, 1169
SduI	GDGCHC	4 cut(s)	96, 549, 1007, 2593
SexAI	ACCWGGT	2 cut(s)	402, 2199
SfaNI	GCATC	8 cut(s)	653, 910, 1249, 1441, 2018, 2571, 3435, 3632
SfcI	CTRYAG	2 cut(s)	1173, 2994
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	882
SinI	GGWCC	3 cut(s)	51, 311, 788
SlaI	CTCGAG	1 cut(s)	321
SmaI	CCCGGG	1 cut(s)	1552
SmiMI	CAYNNNNRTG	3 cut(s)	1767, 2811, 3254
SmlI	CTYRAG	3 cut(s)	321, 2354, 2575
SmoI	CTYRAG	3 cut(s)	321, 2354, 2575
SphI	GCATGC	1 cut(s)	2837
SrfI	GCCCGGGC	1 cut(s)	1552
SsiI	CCGC	5 cut(s)	675, 1555, 1783, 1915, 3398
SspI	AATATT	2 cut(s)	721, 1287
SspMI	CTAG	8 cut(s)	743, 966, 1046, 1362, 1812, 2279, 2597, 2985
SstI	GAGCTC	1 cut(s)	549
StyI	CCWWGG	4 cut(s)	164, 791, 2780, 3535
TaaI	ACNGT	6 cut(s)	426, 728, 913, 2130, 2770, 3084
TaiI	ACGT	5 cut(s)	1879, 2904, 3213, 3245, 3605
TaqII	GACCGA	1 cut(s)	483
TatI	WGTACW	3 cut(s)	444, 1879, 2237
TauI	GCSGC	2 cut(s)	678, 1786
TscAI	CASTG	6 cut(s)	918, 1509, 1519, 2106, 2160, 3087
TseFI	GTSAC	2 cut(s)	398, 3435
TseI	GCWGC	5 cut(s)	1091, 1262, 1780, 2096, 2486
Tsp45I	GTSAC	2 cut(s)	398, 3435
TspGWI	ACGGA	1 cut(s)	539
TspMI	CCCGGG	1 cut(s)	1550
TspRI	CASTG	6 cut(s)	918, 1509, 1519, 2106, 2160, 3087
Tth111I	GACNNNGTC	1 cut(s)	3325
Van91I	CCANNNNNTGG	1 cut(s)	2206
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	51, 311, 788
XagI	CCTNNNNNAGG	1 cut(s)	2618
XapI	RAATTY	5 cut(s)	1082, 1116, 1336, 1498, 1740
XceI	RCATGY	2 cut(s)	349, 2837
XhoI	CTCGAG	1 cut(s)	321
XmaI	CCCGGG	1 cut(s)	1550
XmnI	GAANNNNTTC	3 cut(s)	425, 1353, 2631
XspI	CTAG	8 cut(s)	743, 966, 1046, 1362, 1812, 2279, 2597, 2985
Zsp2I	ATGCAT	1 cut(s)	3625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.