Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Forward (+)

15926063 .. 15926984

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAACTATTTCCTATATACTACTTGTCTACTTATGTGGACTTTTTCTGACATCAATTGTTACTCATGTTGGTATCAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGGTTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCTGGCCCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCGCATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAAATCAAGGAGTTGCTCGAGTATACCGAAGGCTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

179

Amino Acids

19.61

Weight (kDa)

5.29

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	3 cut(s)	28, 475, 521
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	196, 424
Alw26I	GTCTC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	4 cut(s)	193, 273, 415, 439
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	194, 374, 449
AsuC2I	CCSGG	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	374, 449
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	290, 361
BciT130I	CCWGG	2 cut(s)	198, 426
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	2 cut(s)	84, 339
BfmI	CTRYAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	3 cut(s)	94, 198, 426
Bme18I	GGWCC	2 cut(s)	374, 449
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	3 cut(s)	194, 374, 449
BmiI	GGNNCC	2 cut(s)	316, 450
BmrFI	CCNGG	3 cut(s)	94, 198, 426
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	2 cut(s)	286, 291
BseBI	CCWGG	2 cut(s)	198, 426
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	2 cut(s)	286, 291
BseNI	ACTGG	1 cut(s)	387
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	4 cut(s)	195, 275, 417, 441
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	4 cut(s)	195, 275, 417, 441
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	260, 454
BspANI	GGCC	4 cut(s)	195, 275, 417, 441
BspLI	GGNNCC	2 cut(s)	316, 450
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	286, 291
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	260, 454
BssNAI	GTATAC	1 cut(s)	522
Bst1107I	GTATAC	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	198, 426
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	90, 171, 193, 277, 383
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	263, 457
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	260, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	198, 426
BstNSI	RCATGY	2 cut(s)	92, 173
BstSCI	CCNGG	3 cut(s)	92, 196, 424
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZ17I	GTATAC	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	195, 275, 417, 441
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	5 cut(s)	90, 171, 193, 277, 383
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	194, 374, 449
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	5 cut(s)	66, 89, 161, 170, 230
CviQI	GTAC	1 cut(s)	497
DpnI	GATC	2 cut(s)	262, 456
DpnII	GATC	2 cut(s)	260, 454
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	374, 449
Eco88I	CYCGRG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	196, 424
EcoT22I	ATGCAT	1 cut(s)	171
FaeI	CATG	5 cut(s)	69, 92, 164, 173, 233
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	5 cut(s)	65, 88, 160, 169, 229
FblI	GTMKAC	3 cut(s)	28, 475, 521
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	84, 339
GluI	GCNGC	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	195, 275, 417, 441
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	5 cut(s)	69, 92, 164, 173, 233
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	5 cut(s)	29, 39, 220, 476, 522
Hpy188I	TCNGA	2 cut(s)	49, 399
Hpy8I	GTNNAC	5 cut(s)	29, 39, 220, 476, 522
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	169, 284, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	69, 92, 164, 173, 233
Kzo9I	GATC	2 cut(s)	260, 454
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	2 cut(s)	84, 339
MaeIII	GTNAC	2 cut(s)	59, 341
MalI	GATC	2 cut(s)	262, 456
MboI	GATC	2 cut(s)	260, 454
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	55, 239
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	90, 104, 173, 265, 304, 439
Mph1103I	ATGCAT	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	213, 324
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	3 cut(s)	94, 198, 426
MunI	CAATTG	1 cut(s)	55
MvaI	CCWGG	2 cut(s)	198, 426
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	260, 454
NlaIII	CATG	5 cut(s)	69, 92, 164, 173, 233
NlaIV	GGNNCC	2 cut(s)	316, 450
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	2 cut(s)	92, 173
PaeI	GCATGC	2 cut(s)	92, 173
PaeR7I	CTCGAG	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	196, 424
PspGI	CCWGG	2 cut(s)	196, 424
PspN4I	GGNNCC	2 cut(s)	316, 450
PspPI	GGNCC	3 cut(s)	194, 374, 449
PspPPI	RGGWCCY	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	213, 324
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	260, 454
Sau96I	GGNCC	3 cut(s)	194, 374, 449
ScrFI	CCNGG	3 cut(s)	94, 198, 426
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	4 cut(s)	330, 340, 430, 454
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	515
SinI	GGWCC	2 cut(s)	374, 449
SlaI	CTCGAG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	443, 515
SmoI	CTYRAG	2 cut(s)	443, 515
SphI	GCATGC	2 cut(s)	92, 173
Sse9I	AATT	2 cut(s)	55, 239
SspMI	CTAG	2 cut(s)	84, 339
StyD4I	CCNGG	3 cut(s)	92, 196, 424
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	309, 516
TasI	AATT	2 cut(s)	55, 239
TatI	WGTACW	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	213, 324
Tru9I	TTAA	2 cut(s)	213, 324
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	17, 147, 246
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	374, 449
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	2 cut(s)	92, 173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	515
XmiI	GTMKAC	3 cut(s)	28, 475, 521
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	84, 339
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.