Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003223

Physical Location & Seq

Genomic Coordinates Reverse (-)

81865749 .. 81868611

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTGGACCTTTTCTGACATCAATTGTTACTCATGTTGGTATCAGGCTACTAGGCATGCCCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGCAAGTATTTTGCCCTATAGATGATTACCTGATTCTTATTGTTCTTGCAGGAGATGCTGTTGTTAATGTTTACATCAACCATGAAAAAAAATTTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCTTTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAGTGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTCCAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGCCTTGAGGGACCTGATCACATTTTTGTTGGTGGTCTACCCTATTACTTTACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCCTCCGTGGTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCCTTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACTGAATGGGATTAAAATGGGAGACAAGACCCTCACGGTCAGGCGTGCTAATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCATGCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGCTTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATGAGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAAGAGGGCGAGAAATTTGGTTCACTTGTGAGCGTCATCATTCCACGTCCACGACCAGATGGTCAACCTTCATGCTCTCGACTTGTGACTATATTGTTGACTAGAATAAATACGGGGTGGGGACTGATTACTGGCTCACTCAAAAACATGGAGACTGACATATATGAACAAATTGATACAGGTTCCTTACATATTATGTTCTATCTTGAGAAGAGTATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

353

Amino Acids

39.03

Weight (kDa)

4.89

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	139 - 208	2.8e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60900 AT4G36690 AT4G36690 AT4G36690 AT4G36690
fragaria_vesca	FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g13680 FvH4_1g18180
malus_domestica	MD02G1151300.v1.1 MD15G1265800.v1.1
prunus_persica	Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1 Prupe.7G151700_v2.0.a1
pyrus_communis	pycom15g23150
rosa_chinensis	RchiOBHm_Chr2g0102011 RchiOBHm_Chr7g0198161
rosa_laevigata	RLG00000017126
rosa_multiflora	Rmu_co8319619.1_g000001 Rmu_sc0000157.1_g000005 Rmu_sc0001167.1_g000028
rosa_roxburghii	Rroxscaffold_2G00140830
rosa_rugosa	Rorug02G0103800 Rorug02G0103900 Rorug02G0104000
rosa_samantha	Rh2AG152000 Rh2BG157400 Rh2CG157400 Rh2DG157500
rosa_wichuraiana	Rw0G008320 Rw2G011870 Rw4G020950 Rw5G047310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	897
AccB1I	GGYRCC	2 cut(s)	269, 647
AccI	GTMKAC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	194, 851
AcuI	CTGAAG	1 cut(s)	815
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	280, 491
AjiI	CACGTC	1 cut(s)	884
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	1 cut(s)	793
AluI	AGCT	1 cut(s)	793
Alw26I	GTCTC	3 cut(s)	283, 606, 983
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	4 cut(s)	228, 370, 394, 747
ApeKI	GCWGC	3 cut(s)	317, 587, 697
ApoI	RAATTY	2 cut(s)	194, 851
AspS9I	GGNCC	4 cut(s)	6, 329, 404, 482
AsuC2I	CCSGG	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	4 cut(s)	6, 329, 404, 482
BaeGI	GKGCMC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	2 cut(s)	269, 647
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	304, 599, 709
BccI	CCATC	3 cut(s)	245, 316, 890
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	283, 606, 983
BfaI	CTAG	4 cut(s)	51, 294, 503, 939
BfmI	CTRYAG	2 cut(s)	90, 120
BglII	AGATCT	2 cut(s)	215, 559
BisI	GCNGC	3 cut(s)	318, 588, 698
BlsI	GCNGC	3 cut(s)	319, 589, 699
Bme1390I	CCNGG	2 cut(s)	61, 381
Bme18I	GGWCC	4 cut(s)	6, 329, 404, 482
BmeT110I	CYCGRG	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	884
BmgT120I	GGNCC	4 cut(s)	6, 329, 404, 482
BmiI	GGNNCC	6 cut(s)	271, 405, 484, 649, 719, 1021
BmrFI	CCNGG	2 cut(s)	61, 381
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	419, 827
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	490
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 491
Bse1I	ACTGG	2 cut(s)	342, 973
Bse3DI	GCAATG	3 cut(s)	241, 246, 707
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	3 cut(s)	256, 793, 805
BseLI	CCNNNNNNNGG	2 cut(s)	280, 491
BseMI	GCAATG	3 cut(s)	241, 246, 707
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	342, 973
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	304, 599, 709
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	4 cut(s)	230, 372, 396, 749
BshNI	GGYRCC	2 cut(s)	269, 647
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	2 cut(s)	417, 972
BslI	CCNNNNNNNGG	2 cut(s)	280, 491
BsmAI	GTCTC	3 cut(s)	283, 606, 983
BsmFI	GGGAC	2 cut(s)	417, 972
BsnI	GGCC	4 cut(s)	230, 372, 396, 749
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
BspANI	GGCC	4 cut(s)	230, 372, 396, 749
BspCNI	CTCAG	1 cut(s)	658
BspLI	GGNNCC	6 cut(s)	271, 405, 484, 649, 719, 1021
BspT107I	GGYRCC	2 cut(s)	269, 647
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	3 cut(s)	241, 246, 707
BsrI	ACTGG	2 cut(s)	342, 973
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	2 cut(s)	219, 1043
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	6 cut(s)	57, 232, 338, 636, 690, 738
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	256, 793, 805
BstKTI	GATC	6 cut(s)	218, 412, 459, 502, 562, 805
BstMAI	GTCTC	3 cut(s)	283, 606, 983
BstMBI	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 236, 587, 694, 746
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	59, 692
BstSCI	CCNGG	2 cut(s)	59, 379
BstSFI	CTRYAG	2 cut(s)	90, 120
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	304, 599, 709
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	215, 559
BstYI	RGATCY	2 cut(s)	215, 559
BsuRI	GGCC	4 cut(s)	230, 372, 396, 749
BtgI	CCRYGG	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	884
BtsCI	GGATG	3 cut(s)	256, 793, 805
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	6 cut(s)	57, 232, 338, 636, 690, 738
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	4 cut(s)	6, 329, 404, 482
CseI	GACGC	1 cut(s)	859
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	6 cut(s)	33, 56, 185, 689, 909, 985
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	6 cut(s)	217, 411, 458, 501, 561, 804
DpnII	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
DrdI	GACNNNNNNGTC	1 cut(s)	897
DseDI	GACNNNNNNGTC	1 cut(s)	897
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	2 cut(s)	219, 1043
EarI	CTCTTC	2 cut(s)	219, 1043
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	4 cut(s)	6, 329, 404, 482
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	6 cut(s)	36, 59, 188, 692, 912, 988
FaqI	GGGAC	2 cut(s)	417, 972
FatI	CATG	6 cut(s)	32, 55, 184, 688, 908, 984
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	318, 588, 698
FokI	GGATG	3 cut(s)	263, 800, 812
Fsp4HI	GCNGC	3 cut(s)	318, 588, 698
FspBI	CTAG	4 cut(s)	51, 294, 503, 939
GluI	GCNGC	3 cut(s)	318, 588, 698
HaeIII	GGCC	4 cut(s)	230, 372, 396, 749
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	859
Hin1II	CATG	6 cut(s)	36, 59, 188, 692, 912, 988
HincII	GTYRAC	2 cut(s)	902, 936
HindII	GTYRAC	2 cut(s)	902, 936
HinfI	GANTC	2 cut(s)	136, 473
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	8 cut(s)	6, 175, 431, 553, 860, 887, 902, 936
Hpy188I	TCNGA	2 cut(s)	16, 354
Hpy188III	TCNNGA	3 cut(s)	806, 915, 1043
Hpy8I	GTNNAC	8 cut(s)	6, 175, 431, 553, 860, 887, 902, 936
HpyAV	CCTTC	2 cut(s)	790, 915
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	9 cut(s)	152, 239, 320, 587, 688, 692, 707, 712, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 236, 587, 694, 746
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	1 cut(s)	883
Hsp92II	CATG	6 cut(s)	36, 59, 188, 692, 912, 988
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
Lsp1109I	GCAGC	3 cut(s)	304, 599, 709
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	4 cut(s)	51, 294, 503, 939
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	5 cut(s)	26, 296, 568, 778, 922
MalI	GATC	6 cut(s)	217, 411, 458, 501, 561, 804
MboI	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
MboII	GAAGA	4 cut(s)	236, 827, 839, 1060
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	2 cut(s)	215, 559
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	5 cut(s)	22, 194, 702, 851, 1008
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	4 cut(s)	168, 279, 603, 767
Msp20I	TGGCCA	1 cut(s)	749
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	2 cut(s)	61, 381
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	158, 236, 587, 694, 746
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
NlaIII	CATG	6 cut(s)	36, 59, 188, 692, 912, 988
NlaIV	GGNNCC	6 cut(s)	271, 405, 484, 649, 719, 1021
NmuCI	GTSAC	2 cut(s)	296, 922
NspI	RCATGY	2 cut(s)	59, 692
PaeI	GCATGC	2 cut(s)	59, 692
PaeR7I	CTCGAG	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	319, 589, 699
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	6 cut(s)	271, 405, 484, 649, 719, 1021
PspPI	GGNCC	4 cut(s)	6, 329, 404, 482
PspPPI	RGGWCCY	1 cut(s)	404
PspXI	VCTCGAGB	1 cut(s)	470
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	215, 559
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	168, 279, 603, 767
SatI	GCNGC	3 cut(s)	318, 588, 698
Sau3AI	GATC	6 cut(s)	215, 409, 456, 499, 559, 802
Sau96I	GGNCC	4 cut(s)	6, 329, 404, 482
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	61, 381
SduI	GDGCHC	1 cut(s)	274
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	90, 120
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	4 cut(s)	6, 329, 404, 482
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	4 cut(s)	398, 470, 806, 1043
SmoI	CTYRAG	4 cut(s)	398, 470, 806, 1043
SphI	GCATGC	2 cut(s)	59, 692
Sse9I	AATT	5 cut(s)	22, 194, 702, 851, 1008
SspMI	CTAG	4 cut(s)	51, 294, 503, 939
StyD4I	CCNGG	2 cut(s)	59, 379
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	4 cut(s)	264, 471, 530, 916
TasI	AATT	5 cut(s)	22, 194, 702, 851, 1008
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	4 cut(s)	168, 279, 603, 767
Tru9I	TTAA	4 cut(s)	168, 279, 603, 767
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	296, 922
TseI	GCWGC	3 cut(s)	317, 587, 697
Tsp45I	GTSAC	2 cut(s)	296, 922
TspDTI	ATGAA	6 cut(s)	114, 201, 828, 848, 897, 1017
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	4 cut(s)	6, 329, 404, 482
XapI	RAATTY	2 cut(s)	194, 851
XceI	RCATGY	2 cut(s)	59, 692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	4 cut(s)	51, 294, 503, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.